RchiOBHm_Chr2g0164841

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001665
Physical Location & Seq
Reverse (-)
79926971 .. 79928593
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53283

Sequence Viewer

Length: 1290 bp
ATGTCTTGGTTTCTAACCATATTCCTTCTCATTATTAGTCTAGCATTTATCACTCCTTCAGAGGGTAACCATGAGGAGAAGGTTCAATCTGCCGTTGTTATAGGCAAAGTATACTGTGATACATGCTTCCAAGACGGGTTCGCGAAAACTAGCCACTTCATTTCTGGGGCCTCTGTTGGTGTGGAGTGCAAAGATGAGAGTTCGTCGAAACCAAGTTTTCAAGCACAAGTGAAAACAGATAACCAAGGAGTGTTCAAAGTCCACTTGCCTTTCTCAGTAAGCAAACATGTGAAGGAAATTGAAGGGTGTTCTGTGAACCTAATCAGCAGCAGTGAACCCCACTGTGCTGTGGCCTCAACAGCAGCCTCATCTTCGCTTCCCCTCAAGTCCAGGAAGCAAGGAACACACATTTTCTCAGCTGGGTTTTTTGCCTTCAAGCCCCTAAAGCAAGGCAACCTATGTAACCAAAAATCAAGCTCCAACAAGCTGCCATTTTCCTCACCAATTCAACAACAAGACATATTGGGAATTGGACTTCCAGGTCTTCCAGGACTACCAGGTTTGCCGGGACTTCCAGGTCTACCTGGACTTCCGGGTCTTCCAGGACTCCCAGGACTTCCAGGAATCGGAGCTCAGCCAGAGCAAATACCAGAGTCCAAATCTGAAACCAAAACTGCTACTTCTAAGGTAGAGAGGCACCTAATTGGCCTTGGTCTTCCGGGACTGCCTGGACTTCCAGGTCTTCCTGGACTTCCAGGAATCGGAGCTCAGCCAGAGCAAATACCGGAGTCCAAATCTGAAACCAAAACTGCTACTTCTAAGGGAGAGAGGCACCTACTTGTCCTGGGTCTTCCGGGTCTTCCAGGACTCCCAGGTCTTCCAGGACTTCCAGGAATCGGAGCTCAGCCAGAGCAAATACCAGAGTCCAAATCTGAAACCAAAACTGCTACTTCTAAGGGAGAGAGGCACCTACTTGTCCTGGGTCTTCCGGGTCTTCCAGGACTCCCAGGACTTCCAGGACTCCCAGGACTCCCAGGTCTTCCAGGACTTCCAGGAATCGGAGCTCAGCCAGAGCAAATACCACAGTCCAAATCTGAAACCAAAACTGCTACTTCTAAGGGAGAGAGGCACCTACTTGTCCTGGGTCTTCCGGGTCTTCCAGGACTCCCAGGACTTCCAGGACTCCCAGGTCTTCCAGGACTTCCAGGAATCGGAGCCCGCACAGAAAAAATTACAGAGAAAAATGATGATGGAGCCCAGGCCGTCCCACTTGCTTCTTCTTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

429

Amino Acids

43.92

Weight (kDa)

8.43

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 33 - 121 7.2e-20 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 7 cut(s) 540, 576, 594, 738, 873, 1035, 1188
AccB1I GGYRCC 4 cut(s) 696, 831, 966, 1128
AccI GTMKAC 2 cut(s) 111, 580
AccII CGCG 1 cut(s) 143
AciI CCGC 1 cut(s) 1219
AcuI CTGAAG 1 cut(s) 42
AfiI CCNNNNNNNGG 6 cut(s) 62, 626, 761, 896, 1058, 1211
AflIII ACRYGT 1 cut(s) 286
AgsI TTSAA 6 cut(s) 86, 221, 256, 302, 436, 509
AluBI AGCT 7 cut(s) 419, 477, 487, 632, 767, 902, 1064
AluI AGCT 7 cut(s) 419, 477, 487, 632, 767, 902, 1064
Alw21I GWGCWC 4 cut(s) 634, 769, 904, 1066
AoxI GGCC 4 cut(s) 168, 351, 706, 1260
ApeKI GCWGC 3 cut(s) 327, 362, 487
AspS9I GGNCC 1 cut(s) 168
AsuC2I CCSGG 6 cut(s) 567, 594, 720, 855, 990, 1152
AsuHPI GGTGA 1 cut(s) 492
BanI GGYRCC 4 cut(s) 696, 831, 966, 1128
BanII GRGCYC 6 cut(s) 634, 769, 904, 1066, 1219, 1258
Bbv12I GWGCWC 4 cut(s) 634, 769, 904, 1066
BbvI GCAGC 3 cut(s) 339, 374, 474
BccI CCATC 1 cut(s) 1244
BceAI ACGGC 2 cut(s) 77, 1247
BcnI CCSGG 6 cut(s) 567, 594, 720, 855, 990, 1152
BfaI CTAG 2 cut(s) 41, 150
BisI GCNGC 3 cut(s) 328, 363, 488
BlpI GCTNAGC 4 cut(s) 633, 768, 903, 1065
BlsI GCNGC 3 cut(s) 329, 364, 489
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 7 cut(s) 169, 698, 833, 968, 1130, 1216, 1255
Bpu1102I GCTNAGC 4 cut(s) 633, 768, 903, 1065
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 6 cut(s) 567, 594, 720, 855, 990, 1152
BsaWI WCCGGW 1 cut(s) 784
Bsc4I CCNNNNNNNGG 6 cut(s) 62, 626, 761, 896, 1058, 1211
BseLI CCNNNNNNNGG 6 cut(s) 62, 626, 761, 896, 1058, 1211
BseMII CTCAG 6 cut(s) 288, 429, 647, 782, 917, 1079
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 3 cut(s) 339, 374, 474
BseYI CCCAGC 1 cut(s) 419
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 4 cut(s) 170, 353, 708, 1262
BshNI GGYRCC 4 cut(s) 696, 831, 966, 1128
BsiHKAI GWGCWC 4 cut(s) 634, 769, 904, 1066
BsiSI CCGG 7 cut(s) 566, 593, 719, 785, 854, 989, 1151
BslFI GGGAC 3 cut(s) 582, 735, 1250
BslI CCNNNNNNNGG 6 cut(s) 62, 626, 761, 896, 1058, 1211
BsmFI GGGAC 3 cut(s) 582, 735, 1250
BsnI GGCC 4 cut(s) 170, 353, 708, 1262
Bsp1286I GDGCHC 6 cut(s) 634, 769, 904, 1066, 1219, 1258
Bsp1720I GCTNAGC 4 cut(s) 633, 768, 903, 1065
Bsp68I TCGCGA 1 cut(s) 143
BspACI CCGC 1 cut(s) 1219
BspANI GGCC 4 cut(s) 170, 353, 708, 1262
BspCNI CTCAG 6 cut(s) 287, 428, 646, 781, 916, 1078
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 7 cut(s) 169, 698, 833, 968, 1130, 1216, 1255
BspT107I GGYRCC 4 cut(s) 696, 831, 966, 1128
BssNAI GTATAC 1 cut(s) 112
BssT1I CCWWGG 2 cut(s) 244, 709
Bst1107I GTATAC 1 cut(s) 112
Bst4CI ACNGT 3 cut(s) 116, 344, 1086
BstC8I GCNNGC 1 cut(s) 1219
BstEII GGTNACC 1 cut(s) 65
BstFNI CGCG 1 cut(s) 143
BstMWI GCNNNNNNNGC 2 cut(s) 359, 445
BstNSI RCATGY 2 cut(s) 126, 290
BstPI GGTNACC 1 cut(s) 65
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 3 cut(s) 339, 374, 474
BstZ17I GTATAC 1 cut(s) 112
BsuRI GGCC 4 cut(s) 170, 353, 708, 1262
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 2 cut(s) 337, 340
BtuMI TCGCGA 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 1219
Cfr13I GGNCC 1 cut(s) 168
CsiI ACCWGGT 1 cut(s) 556
CviAII CATG 3 cut(s) 71, 123, 287
DrdI GACNNNNNNGTC 7 cut(s) 540, 576, 594, 738, 873, 1035, 1188
DseDI GACNNNNNNGTC 7 cut(s) 540, 576, 594, 738, 873, 1035, 1188
Ecl136II GAGCTC 4 cut(s) 632, 767, 902, 1064
Eco130I CCWWGG 2 cut(s) 244, 709
Eco24I GRGCYC 6 cut(s) 634, 769, 904, 1066, 1219, 1258
Eco53kI GAGCTC 4 cut(s) 632, 767, 902, 1064
Eco57I CTGAAG 1 cut(s) 42
Eco91I GGTNACC 1 cut(s) 65
EcoICRI GAGCTC 4 cut(s) 632, 767, 902, 1064
EcoO109I RGGNCCY 1 cut(s) 168
EcoO65I GGTNACC 1 cut(s) 65
EcoT14I CCWWGG 2 cut(s) 244, 709
EcoT38I GRGCYC 6 cut(s) 634, 769, 904, 1066, 1219, 1258
ErhI CCWWGG 2 cut(s) 244, 709
FaeI CATG 3 cut(s) 74, 126, 290
FaiI YATR 8 cut(s) 20, 72, 101, 112, 124, 288, 460, 521
FaqI GGGAC 3 cut(s) 582, 735, 1250
FatI CATG 3 cut(s) 70, 122, 286
FauI CCCGC 1 cut(s) 1226
FblI GTMKAC 2 cut(s) 111, 580
Fnu4HI GCNGC 3 cut(s) 328, 363, 488
FriOI GRGCYC 6 cut(s) 634, 769, 904, 1066, 1219, 1258
Fsp4HI GCNGC 3 cut(s) 328, 363, 488
FspBI CTAG 2 cut(s) 41, 150
GluI GCNGC 3 cut(s) 328, 363, 488
GsaI CCCAGC 1 cut(s) 423
HaeIII GGCC 4 cut(s) 170, 353, 708, 1262
HapII CCGG 7 cut(s) 566, 593, 719, 785, 854, 989, 1151
Hin1II CATG 3 cut(s) 74, 126, 290
HpaII CCGG 7 cut(s) 566, 593, 719, 785, 854, 989, 1151
HphI GGTGA 1 cut(s) 492
Hpy166II GTNNAC 5 cut(s) 112, 262, 316, 335, 581
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 5 cut(s) 112, 262, 316, 335, 581
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 6 cut(s) 35, 66, 73, 286, 296, 442
HpyCH4III ACNGT 3 cut(s) 116, 344, 1086
HpyCH4V TGCA 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 445
Hsp92II CATG 3 cut(s) 74, 126, 290
LmnI GCTCC 7 cut(s) 482, 629, 764, 899, 1061, 1214, 1253
Lsp1109I GCAGC 3 cut(s) 339, 374, 474
MabI ACCWGGT 1 cut(s) 556
MaeI CTAG 2 cut(s) 41, 150
MaeIII GTNAC 2 cut(s) 65, 461
MhlI GDGCHC 6 cut(s) 634, 769, 904, 1066, 1219, 1258
MluCI AATT 5 cut(s) 297, 504, 528, 702, 1230
MmeI TCCRAC 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 7 cut(s) 566, 593, 719, 785, 854, 989, 1151
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 359, 445
NciI CCSGG 6 cut(s) 567, 594, 720, 855, 990, 1152
NlaIII CATG 3 cut(s) 74, 126, 290
NlaIV GGNNCC 7 cut(s) 169, 698, 833, 968, 1130, 1216, 1255
NruI TCGCGA 1 cut(s) 143
NspI RCATGY 2 cut(s) 126, 290
PciI ACATGT 1 cut(s) 286
PfeI GAWTC 5 cut(s) 624, 759, 894, 1056, 1209
PkrI GCNGC 3 cut(s) 329, 364, 489
PscI ACATGT 1 cut(s) 286
Psp124BI GAGCTC 4 cut(s) 634, 769, 904, 1066
PspEI GGTNACC 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 419
PspN4I GGNNCC 7 cut(s) 169, 698, 833, 968, 1130, 1216, 1255
PspPI GGNCC 1 cut(s) 168
PvuII CAGCTG 1 cut(s) 419
RruI TCGCGA 1 cut(s) 143
SacI GAGCTC 4 cut(s) 634, 769, 904, 1066
SatI GCNGC 3 cut(s) 328, 363, 488
Sau96I GGNCC 1 cut(s) 168
SduI GDGCHC 6 cut(s) 634, 769, 904, 1066, 1219, 1258
SexAI ACCWGGT 1 cut(s) 556
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 5 cut(s) 297, 504, 528, 702, 1230
SsiI CCGC 1 cut(s) 1219
SspMI CTAG 2 cut(s) 41, 150
SstI GAGCTC 4 cut(s) 634, 769, 904, 1066
StyI CCWWGG 2 cut(s) 244, 709
TaaI ACNGT 3 cut(s) 116, 344, 1086
TaqI TCGA 1 cut(s) 206
TasI AATT 5 cut(s) 297, 504, 528, 702, 1230
TfiI GAWTC 5 cut(s) 624, 759, 894, 1056, 1209
TscAI CASTG 2 cut(s) 337, 347
TseI GCWGC 3 cut(s) 327, 362, 487
TspDTI ATGAA 1 cut(s) 148
TspRI CASTG 2 cut(s) 337, 347
XceI RCATGY 2 cut(s) 126, 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 161
XmiI GTMKAC 2 cut(s) 111, 580
XspI CTAG 2 cut(s) 41, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.