Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001665

Physical Location & Seq

Genomic Coordinates Forward (+)

150508 .. 151560

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g00170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTCTTGGTTTCTTACAGTTATCTTTCTGGTTACTACTCTCACATTTCATACTCCTTCGGAGGCTAGCTATGAGGAGATCCAGCCTTCTGCAGTAATTGTTGGCACTGTCTACTGTGACACATGTTTTCAAGAGGATTTCTCAAATACCAGCCATTTCATTTCAGGGGCTTCTATTGGTGTGGAATGCAAAGATGGGCCTTCAACAAAACCAAGTTTCAACGCACAAGTGAAAACAAACAGCCATGGACAATTCAAAGTCCATCTGCCCTTCAAAGTGAGCAAAGATGTCAAGAAAATTGAAGGATGCTCCGTGAAACTAATCCGCAGCAGTGAACCCTACTGTGCTGTGGCTTCATCGGCCACCTCATCTTCCCTACACCTCAAGGCAAGAAAGCAAGGGACCCACATATTCTCTGCTGGTTTCTTCACCTTCAAGCCTCTCAAGCAACCCAGCTTGTGCAACCAGAAACCCAACATTCAGAATTCCAAGAAATTAAATTCCCAGAAGTTCTCAGAGATGGCATTCCCATCCTCCTCTCAGGTGGACCCCAAAATGCCTGATCCCTCTCTCAACCAATCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

196

Amino Acids

21.47

Weight (kDa)

9.14

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15780
fragaria_vesca	FvH4_6g46330 FvH4_6g46340 FvH4_6g46340 FvH4_6g46340 FvH4_6g46340 FvH4_6g46340
malus_domestica	MD09G1074600.v1.1 MD09G1074800.v1.1 MD09G1075000.v1.1 MD09G1075400.v1.1 MD09G1075500.v1.1 MD16G1014300.v1.1 MD17G1066000.v1.1
prunus_persica	Prupe.3G248600_v2.0.a1 Prupe.3G248700_v2.0.a1
pyrus_communis	pycom09g00170 pycom09g00180 pycom09g00190 pycom09g00210 pycom09g00240 pycom09g00250 pycom17g06630
rosa_chinensis	RchiOBHm_Chr2g0164801 RchiOBHm_Chr2g0164841
rosa_laevigata	RLG00000021491 RLG00000021493
rosa_multiflora	Rmu_co8019616.1_g000001 Rmu_sc0000946.1_g000035 Rmu_sc0006207.1_g000006 Rmu_sc0022409.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086260 Rroxscaffold_2G00086280
rosa_rugosa	Rorug02G0510600 Rorug02G0510700 Rorug02G0510700 Rorug02G0510800 Rorug02G0510900 Rorug02G0510900
rosa_samantha	Rh2AG578700 Rh2AG579000 Rh2BG590000 Rh2BG590100 Rh2CG560600 Rh2CG560700 Rh2DG600200 Rh2DG600400
rosa_wichuraiana	Rw2G048050 Rw2G048060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	1 cut(s)	325
AclWI	GGATC	2 cut(s)	73, 557
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	2 cut(s)	484, 499
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	7 cut(s)	131, 204, 220, 256, 274, 302, 436
AluBI	AGCT	2 cut(s)	69, 456
AluI	AGCT	2 cut(s)	69, 456
AlwI	GGATC	2 cut(s)	73, 557
AoxI	GGCC	2 cut(s)	197, 360
ApeKI	GCWGC	1 cut(s)	327
ApoI	RAATTY	2 cut(s)	484, 499
AspS9I	GGNCC	3 cut(s)	197, 402, 547
AsuHPI	GGTGA	1 cut(s)	421
AsuNHI	GCTAGC	1 cut(s)	65
AvaII	GGWCC	2 cut(s)	402, 547
BbvI	GCAGC	1 cut(s)	339
BccI	CCATC	4 cut(s)	188, 270, 514, 538
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	329
Bme18I	GGWCC	2 cut(s)	402, 547
BmgT120I	GGNCC	3 cut(s)	197, 402, 547
BmiI	GGNNCC	3 cut(s)	403, 404, 549
BmsI	GCATC	1 cut(s)	296
BmtI	GCTAGC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpuEI	CTTGAG	2 cut(s)	368, 428
BsaJI	CCNNGG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	2 cut(s)	311, 530
BseMII	CTCAG	2 cut(s)	528, 554
BseRI	GAGGAG	2 cut(s)	89, 526
BseXI	GCAGC	1 cut(s)	339
BseYI	CCCAGC	1 cut(s)	452
BshFI	GGCC	2 cut(s)	199, 362
BslFI	GGGAC	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	415
BsmI	GAATGC	2 cut(s)	191, 524
BsnI	GGCC	2 cut(s)	199, 362
Bsp143I	GATC	2 cut(s)	78, 562
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	199, 362
BspCNI	CTCAG	2 cut(s)	527, 553
BspLI	GGNNCC	3 cut(s)	403, 404, 549
BspMAI	CTGCAG	1 cut(s)	94
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	2 cut(s)	73, 557
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	2 cut(s)	78, 562
BssT1I	CCWWGG	1 cut(s)	244
Bst4CI	ACNGT	4 cut(s)	19, 109, 116, 344
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	514, 540
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	311, 530
BstKTI	GATC	2 cut(s)	81, 565
BstMBI	GATC	2 cut(s)	78, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	359, 445
BstNSI	RCATGY	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BsuRI	GGCC	2 cut(s)	199, 362
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	311, 530
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	2 cut(s)	105, 337
Cac8I	GCNNGC	1 cut(s)	67
Cfr13I	GGNCC	3 cut(s)	197, 402, 547
CviAII	CATG	2 cut(s)	123, 245
DdeI	CTNAG	2 cut(s)	514, 540
DpnI	GATC	2 cut(s)	80, 564
DpnII	GATC	2 cut(s)	78, 562
EaeI	YGGCCR	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	402, 547
EcoO109I	RGGNCCY	1 cut(s)	402
EcoRI	GAATTC	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	2 cut(s)	126, 248
FaiI	YATR	5 cut(s)	51, 72, 124, 246, 410
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	2 cut(s)	122, 244
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	328
FokI	GGATG	2 cut(s)	318, 517
Fsp4HI	GCNGC	1 cut(s)	328
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	1 cut(s)	328
GsaI	CCCAGC	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	199, 362
Hin1II	CATG	2 cut(s)	126, 248
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	3 cut(s)	112, 335, 547
Hpy188I	TCNGA	3 cut(s)	61, 483, 517
Hpy188III	TCNNGA	2 cut(s)	131, 292
Hpy8I	GTNNAC	3 cut(s)	112, 335, 547
HpyAV	CCTTC	6 cut(s)	66, 96, 210, 280, 296, 442
HpyCH4III	ACNGT	4 cut(s)	19, 109, 116, 344
HpyCH4V	TGCA	3 cut(s)	92, 189, 462
HpyF10VI	GCNNNNNNNGC	2 cut(s)	359, 445
HpyF3I	CTNAG	2 cut(s)	514, 540
Hsp92II	CATG	2 cut(s)	126, 248
KflI	GGGWCCC	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	78, 562
LmnI	GCTCC	1 cut(s)	314
Lsp1109I	GCAGC	1 cut(s)	339
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	31, 116
MalI	GATC	2 cut(s)	80, 564
MboI	GATC	2 cut(s)	78, 562
MboII	GAAGA	2 cut(s)	363, 418
MflI	RGATCY	1 cut(s)	78
MluCI	AATT	6 cut(s)	96, 251, 297, 484, 494, 499
MnlI	CCTC	9 cut(s)	55, 67, 127, 376, 392, 450, 544, 547, 577
MseI	TTAA	1 cut(s)	497
Mva1269I	GAATGC	2 cut(s)	191, 524
MwoI	GCNNNNNNNGC	2 cut(s)	359, 445
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	2 cut(s)	78, 562
NheI	GCTAGC	1 cut(s)	65
NlaIII	CATG	2 cut(s)	126, 248
NlaIV	GGNNCC	3 cut(s)	403, 404, 549
NmuCI	GTSAC	1 cut(s)	116
NspI	RCATGY	1 cut(s)	126
PciI	ACATGT	1 cut(s)	122
PctI	GAATGC	2 cut(s)	191, 524
PkrI	GCNGC	1 cut(s)	329
PpuMI	RGGWCCY	1 cut(s)	402
PscI	ACATGT	1 cut(s)	122
Psp5II	RGGWCCY	1 cut(s)	402
PspFI	CCCAGC	1 cut(s)	452
PspN4I	GGNNCC	3 cut(s)	403, 404, 549
PspPI	GGNCC	3 cut(s)	197, 402, 547
PspPPI	RGGWCCY	1 cut(s)	402
PstI	CTGCAG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	497
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	2 cut(s)	78, 562
Sau96I	GGNCC	3 cut(s)	197, 402, 547
SetI	ASST	6 cut(s)	71, 368, 384, 434, 458, 546
SfaNI	GCATC	1 cut(s)	296
SfcI	CTRYAG	1 cut(s)	90
SinI	GGWCC	2 cut(s)	402, 547
SmlI	CTYRAG	2 cut(s)	383, 443
SmoI	CTYRAG	2 cut(s)	383, 443
Sse9I	AATT	6 cut(s)	96, 251, 297, 484, 494, 499
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	4 cut(s)	19, 109, 116, 344
TasI	AATT	6 cut(s)	96, 251, 297, 484, 494, 499
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TscAI	CASTG	2 cut(s)	112, 337
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	327
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	38, 148, 345
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	2 cut(s)	112, 337
VpaK11BI	GGWCC	2 cut(s)	402, 547
XapI	RAATTY	2 cut(s)	484, 499
XceI	RCATGY	1 cut(s)	126
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.