AT5G37950

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000714
Physical Location & Seq
Forward (+)
15115883 .. 15118085
2203 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G37950.1

Sequence Viewer

Length: 1056 bp
ATGATGCAACTTGGGAGAGCCCATTCTTTAAAGGGTTTCTCGATTACAGTTGCTCAGACTAAGTTCAATTACTTAAACCCTTCCAAAGACTTAGCTGATTTTCAGTTCATCACCATCCCAGAGAGCTTACCAGCCTCGGATCTGAAAACTCTTGGGCCAATTTGGTTTATTATTAAACTCAACAAAGAGTGTGAAATTAGCTTCAAGAAGTGTTTAGGTCAGTTTTTGCTGCAACAACAGGAAGAGATCGCATGTGTCATCTACGACGAGTTCATGTACTTTGCTGAAGCTGCAGCCAAAGAGTTTAACCTTCCCAAAGTTATTTTCAGTACCGAAAATGCGACGGCTTTTGCTTGTCGCTCTGCCATGTGCAAACTCTATGCAAAAGATGGTATAGCTCCCCTTACAGAAGGATGTGGGCGAGAAGAGGAGCTAGTGCCAGAGTTGCATCCCCTTAGATACAAAGACCTACCAACTTCAGCATTTGCACCAGTAGAAGCCTCAGTGGAAGTGTTTAAAAGTTCATGTGAGAAAGGGACAGCTTCCTCTATGATAATCAACACAGTGAGTTGTCTAGAGATTTCATCCTTGGAGTGGCTTCAACAAGAACTTAAGATTCCGATATATCCTATAGGCCCACTTTACATGGTTTCTTCAGCTCCTCCTACGAGTCTACTAGACGAGAATGAGAGTTGCATTGATTGGCTGAACAAACAAAAGCCAAGTTCTGTCATATACATAAGCTTGGGGAGCTTTACTTTGTTGGAAACTAAAGAAGTGTTGGAAATGGCTTCCGGGTTAGTTAGTAGTAACCAATACTTCTTGTGGGCGATCCGACCTGGATCCATACTTGGTTCTGAATTATCTAATGAAGAATTGTTTAGTATGATGGAAATACCGGACCGAGGCTACATTGTGAAATGGGCTACACAGAAACAAGTGCTTGCACATGCAGCGGTTGGAGCGTTTTGGAGTCATTGTGGATGGAACTCGACCCTAGAGAGTATTGGGGAAGGAATTCCGATTGTAGGCCTTTTACTACTGATCAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002239 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008194 GO:0009308 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009628 GO:0009690 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009894 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010118 GO:0010150 GO:0010154 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0022414 GO:0023052 GO:0031537 GO:0031668 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0034754 GO:0035251 GO:0042221 GO:0042445 GO:0042631 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046527 GO:0047254 GO:0047807 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050139 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0052640 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071462 GO:0071495 GO:0071496 GO:0071704 GO:0080043 GO:0080044 GO:0080062 GO:0080090 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:0104004 GO:1900000 GO:1901527 GO:1901564 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204
Pfam Domains
Protein Families
UDPGT

Protein Analysis

351

Amino Acids

39.04

Weight (kDa)

5.02

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 242 - 346 4.7e-14 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 673
AciI CCGC 1 cut(s) 956
AclWI GGATC 4 cut(s) 147, 826, 837, 850
AcsI RAATTY 1 cut(s) 1017
AcuI CTGAAG 3 cut(s) 306, 462, 639
AfaI GTAC 2 cut(s) 278, 331
AfiI CCNNNNNNNGG 3 cut(s) 594, 905, 1028
AflII CTTAAG 1 cut(s) 611
AgsI TTSAA 3 cut(s) 67, 205, 602
AjnI CCWGG 1 cut(s) 838
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AlwI GGATC 4 cut(s) 147, 826, 837, 850
AoxI GGCC 3 cut(s) 155, 634, 1030
ApeKI GCWGC 4 cut(s) 229, 290, 293, 953
ApoI RAATTY 1 cut(s) 1017
Asp700I GAANNNNTTC 1 cut(s) 1017
AspS9I GGNCC 3 cut(s) 155, 635, 901
AsuC2I CCSGG 1 cut(s) 796
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 901
BamHI GGATCC 1 cut(s) 842
BanII GRGCYC 1 cut(s) 22
BbvI GCAGC 4 cut(s) 216, 277, 305, 965
BccI CCATC 4 cut(s) 122, 383, 883, 978
BceAI ACGGC 1 cut(s) 360
BciT130I CCWGG 1 cut(s) 840
BclI TGATCA 1 cut(s) 1044
BcnI CCSGG 1 cut(s) 796
BfaI CTAG 4 cut(s) 434, 575, 677, 998
BfmI CTRYAG 2 cut(s) 291, 630
BfrI CTTAAG 1 cut(s) 611
BisI GCNGC 4 cut(s) 230, 291, 294, 954
BlsI GCNGC 4 cut(s) 231, 292, 295, 955
Bme1390I CCNGG 2 cut(s) 796, 840
Bme18I GGWCC 1 cut(s) 901
BmgT120I GGNCC 3 cut(s) 155, 635, 901
BmiI GGNNCC 1 cut(s) 844
BmrFI CCNGG 2 cut(s) 796, 840
BmsI GCATC 1 cut(s) 457
BpuMI CCSGG 1 cut(s) 796
BsaJI CCNNGG 3 cut(s) 135, 588, 904
BsaWI WCCGGW 1 cut(s) 898
BsaXI ACNNNNNCTCC 2 cut(s) 964, 994
Bsc4I CCNNNNNNNGG 3 cut(s) 594, 905, 1028
Bse1I ACTGG 1 cut(s) 491
BseBI CCWGG 1 cut(s) 840
BseDI CCNNGG 3 cut(s) 135, 588, 904
BseGI GGATG 5 cut(s) 114, 419, 448, 584, 989
BseLI CCNNNNNNNGG 3 cut(s) 594, 905, 1028
BseMII CTCAG 2 cut(s) 68, 516
BseNI ACTGG 1 cut(s) 491
BseRI GAGGAG 2 cut(s) 443, 651
BseXI GCAGC 4 cut(s) 216, 277, 305, 965
BshFI GGCC 3 cut(s) 157, 636, 1032
BsiSI CCGG 2 cut(s) 795, 899
BslFI GGGAC 1 cut(s) 550
BslI CCNNNNNNNGG 3 cut(s) 594, 905, 1028
BsmFI GGGAC 1 cut(s) 550
BsnI GGCC 3 cut(s) 157, 636, 1032
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 5 cut(s) 139, 246, 831, 842, 1044
BspACI CCGC 1 cut(s) 956
BspANI GGCC 3 cut(s) 157, 636, 1032
BspCNI CTCAG 2 cut(s) 67, 515
BspLI GGNNCC 1 cut(s) 844
BspMAI CTGCAG 1 cut(s) 295
BspPI GGATC 4 cut(s) 147, 826, 837, 850
BspTI CTTAAG 1 cut(s) 611
BsrI ACTGG 1 cut(s) 491
BssECI CCNNGG 3 cut(s) 135, 588, 904
BssMI GATC 5 cut(s) 139, 246, 831, 842, 1044
BssT1I CCWWGG 1 cut(s) 588
Bst2UI CCWGG 1 cut(s) 840
Bst4CI ACNGT 2 cut(s) 49, 565
Bst6I CTCTTC 2 cut(s) 237, 420
BstAFI CTTAAG 1 cut(s) 611
BstC8I GCNNGC 1 cut(s) 945
BstDEI CTNAG 5 cut(s) 54, 60, 91, 455, 502
BstF5I GGATG 5 cut(s) 114, 419, 448, 584, 989
BstKTI GATC 5 cut(s) 142, 249, 834, 845, 1047
BstMBI GATC 5 cut(s) 139, 246, 831, 842, 1044
BstMWI GCNNNNNNNGC 5 cut(s) 290, 445, 750, 953, 962
BstNI CCWGG 1 cut(s) 840
BstNSI RCATGY 2 cut(s) 255, 953
BstSCI CCNGG 2 cut(s) 794, 838
BstSFI CTRYAG 2 cut(s) 291, 630
BstV1I GCAGC 4 cut(s) 216, 277, 305, 965
BstX2I RGATCY 2 cut(s) 139, 842
BstYI RGATCY 2 cut(s) 139, 842
BsuRI GGCC 3 cut(s) 157, 636, 1032
BtsCI GGATG 5 cut(s) 114, 419, 448, 584, 989
BtsIMutI CAGTG 2 cut(s) 510, 570
Cac8I GCNNGC 1 cut(s) 945
Cfr13I GGNCC 3 cut(s) 155, 635, 901
CpoI CGGWCCG 1 cut(s) 901
Csp6I GTAC 2 cut(s) 277, 330
CspI CGGWCCG 1 cut(s) 901
CviAII CATG 6 cut(s) 252, 274, 367, 525, 646, 950
CviQI GTAC 2 cut(s) 277, 330
DdeI CTNAG 5 cut(s) 54, 60, 91, 455, 502
DpnI GATC 5 cut(s) 141, 248, 833, 844, 1046
DpnII GATC 5 cut(s) 139, 246, 831, 842, 1044
DraI TTTAAA 2 cut(s) 30, 517
Eam1104I CTCTTC 2 cut(s) 237, 420
EarI CTCTTC 2 cut(s) 237, 420
Eco130I CCWWGG 1 cut(s) 588
Eco147I AGGCCT 1 cut(s) 1032
Eco24I GRGCYC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 901
Eco57I CTGAAG 3 cut(s) 306, 462, 639
EcoRI GAATTC 1 cut(s) 1017
EcoRII CCWGG 1 cut(s) 838
EcoT14I CCWWGG 1 cut(s) 588
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 588
FaeI CATG 6 cut(s) 255, 277, 370, 528, 649, 953
FaqI GGGAC 1 cut(s) 550
FatI CATG 6 cut(s) 251, 273, 366, 524, 645, 949
FbaI TGATCA 1 cut(s) 1044
FblI GTMKAC 1 cut(s) 673
Fnu4HI GCNGC 4 cut(s) 230, 291, 294, 954
FokI GGATG 5 cut(s) 101, 426, 435, 571, 996
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 4 cut(s) 230, 291, 294, 954
FspBI CTAG 4 cut(s) 434, 575, 677, 998
GluI GCNGC 4 cut(s) 230, 291, 294, 954
HaeIII GGCC 3 cut(s) 157, 636, 1032
HapII CCGG 2 cut(s) 795, 899
Hin1II CATG 6 cut(s) 255, 277, 370, 528, 649, 953
HindIII AAGCTT 1 cut(s) 742
HinfI GANTC 3 cut(s) 616, 670, 973
HpaII CCGG 2 cut(s) 795, 899
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 674
Hpy188I TCNGA 7 cut(s) 57, 139, 144, 621, 836, 859, 1023
Hpy188III TCNNGA 3 cut(s) 40, 205, 575
Hpy8I GTNNAC 1 cut(s) 674
Hpy99I CGWCG 2 cut(s) 269, 346
HpyAV CCTTC 4 cut(s) 90, 320, 404, 1007
HpyCH4III ACNGT 2 cut(s) 49, 565
HpyF10VI GCNNNNNNNGC 5 cut(s) 290, 445, 750, 953, 962
HpyF3I CTNAG 5 cut(s) 54, 60, 91, 455, 502
Hsp92II CATG 6 cut(s) 255, 277, 370, 528, 649, 953
Ksp22I TGATCA 1 cut(s) 1044
Kzo9I GATC 5 cut(s) 139, 246, 831, 842, 1044
LmnI GCTCC 5 cut(s) 403, 430, 664, 750, 962
LpnPI CCDG 9 cut(s) 132, 144, 224, 453, 504, 808, 825, 852, 912
Lsp1109I GCAGC 4 cut(s) 216, 277, 305, 965
LweI GCATC 1 cut(s) 457
MaeI CTAG 4 cut(s) 434, 575, 677, 998
MaeIII GTNAC 1 cut(s) 809
MalI GATC 5 cut(s) 141, 248, 833, 844, 1046
MboI GATC 5 cut(s) 139, 246, 831, 842, 1044
MboII GAAGA 4 cut(s) 254, 437, 645, 884
MflI RGATCY 2 cut(s) 139, 842
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 6 cut(s) 67, 159, 195, 860, 875, 1017
MlyI GAGTC 2 cut(s) 679, 982
MmeI TCCRAC 4 cut(s) 744, 762, 859, 940
MnlI CCTC 6 cut(s) 145, 421, 511, 556, 672, 899
MroXI GAANNNNTTC 1 cut(s) 1017
MseI TTAA 6 cut(s) 29, 74, 174, 306, 516, 612
MspA1I CMGCKG 1 cut(s) 956
MspCI CTTAAG 1 cut(s) 611
MspI CCGG 2 cut(s) 795, 899
MspR9I CCNGG 2 cut(s) 796, 840
MvaI CCWGG 1 cut(s) 840
MwoI GCNNNNNNNGC 5 cut(s) 290, 445, 750, 953, 962
NciI CCSGG 1 cut(s) 796
NdeII GATC 5 cut(s) 139, 246, 831, 842, 1044
NlaIII CATG 6 cut(s) 255, 277, 370, 528, 649, 953
NlaIV GGNNCC 1 cut(s) 844
NspI RCATGY 2 cut(s) 255, 953
PceI AGGCCT 1 cut(s) 1032
PdmI GAANNNNTTC 1 cut(s) 1017
PfeI GAWTC 1 cut(s) 616
PkrI GCNGC 4 cut(s) 231, 292, 295, 955
PleI GAGTC 2 cut(s) 678, 981
PpsI GAGTC 2 cut(s) 678, 981
Psp6I CCWGG 1 cut(s) 838
PspGI CCWGG 1 cut(s) 838
PspN4I GGNNCC 1 cut(s) 844
PspPI GGNCC 3 cut(s) 155, 635, 901
PstI CTGCAG 1 cut(s) 295
PsuI RGATCY 2 cut(s) 139, 842
RsaI GTAC 2 cut(s) 278, 331
RsaNI GTAC 2 cut(s) 277, 330
Rsr2I CGGWCCG 1 cut(s) 901
RsrII CGGWCCG 1 cut(s) 901
SaqAI TTAA 6 cut(s) 29, 74, 174, 306, 516, 612
SatI GCNGC 4 cut(s) 230, 291, 294, 954
Sau3AI GATC 5 cut(s) 139, 246, 831, 842, 1044
Sau96I GGNCC 3 cut(s) 155, 635, 901
SchI GAGTC 2 cut(s) 679, 982
ScrFI CCNGG 2 cut(s) 796, 840
SduI GDGCHC 1 cut(s) 22
SfaNI GCATC 1 cut(s) 457
SfcI CTRYAG 2 cut(s) 291, 630
SinI GGWCC 1 cut(s) 901
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
Sse9I AATT 6 cut(s) 67, 159, 195, 860, 875, 1017
SseBI AGGCCT 1 cut(s) 1032
SsiI CCGC 1 cut(s) 956
SspMI CTAG 4 cut(s) 434, 575, 677, 998
StuI AGGCCT 1 cut(s) 1032
StyD4I CCNGG 2 cut(s) 794, 838
StyI CCWWGG 1 cut(s) 588
TaaI ACNGT 2 cut(s) 49, 565
TaqI TCGA 2 cut(s) 41, 992
TaqII GACCGA 1 cut(s) 918
TasI AATT 6 cut(s) 67, 159, 195, 860, 875, 1017
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 1 cut(s) 616
Tru1I TTAA 6 cut(s) 29, 74, 174, 306, 516, 612
Tru9I TTAA 6 cut(s) 29, 74, 174, 306, 516, 612
TscAI CASTG 2 cut(s) 510, 570
TseI GCWGC 4 cut(s) 229, 290, 293, 953
TspDTI ATGAA 5 cut(s) 97, 262, 513, 573, 885
TspRI CASTG 2 cut(s) 510, 570
Vha464I CTTAAG 1 cut(s) 611
VpaK11BI GGWCC 1 cut(s) 901
XapI RAATTY 1 cut(s) 1017
XbaI TCTAGA 1 cut(s) 574
XceI RCATGY 2 cut(s) 255, 953
XmiI GTMKAC 1 cut(s) 673
XmnI GAANNNNTTC 1 cut(s) 1017
XspI CTAG 4 cut(s) 434, 575, 677, 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.