Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Forward (+)

74746511 .. 74748935

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG472900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAGATGCAAAAGAGAACCCCGAGAGGTCAGAGATTGGTCCTAGTTCCAACTCCATACCAAGGCCACATAAACCCAATGCTTCAGTTGGGTACGTTTCTTCACTCAAAGGGATTTTCCATTACCATCGTTCACACCCATTTCAACTCTCCAAGCCCTTCCAACCACCCTGAGTTCACATTCATTCCGATTCAAGACGGCCTAACTGTTCCTCTAGTCTCATCCGGGAATATAATAGCTATTCTGTTGGCTCTCAATGCCAATTGCAAATCGAGTTTCGAACAATGTTTAACTACTCAAGTAATGAAACAAGAACCGGAGAAGAAGATCACCTGCATCATCTACGATGAATTCATGTACTTCTCTGAAGCTGCTGCTAATTATCTGAATATTCCAAGCATCATCCTCCGTACTACCAGTGCAGCCAACTTTCATGCTCGATCTACCGTCGTAGAACTTTATTCAAAAGGCCACATTCCCTTCCCAGATCTAGACCTAGCTAAATGGCATGGGATCTCACCGACATCGAGCACCCTTTCTTGTGGGTGTTCGGACAGAATCCACACCATTTCAGAAGGTTTCCAAATGGCTGTGGAGACAAGAATTGCACATGGCATGAATGAACCACAACTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

212

Amino Acids

23.51

Weight (kDa)

6.78

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	341
AccB7I	CCANNNNNTGG	1 cut(s)	632
AclWI	GGATC	1 cut(s)	521
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	2 cut(s)	68, 387
AfaI	GTAC	3 cut(s)	94, 359, 412
AfiI	CCNNNNNNNGG	2 cut(s)	62, 632
AgsI	TTSAA	3 cut(s)	145, 194, 465
AjuI	GAANNNNNNNTTGG	1 cut(s)	615
AluBI	AGCT	3 cut(s)	239, 371, 500
AluI	AGCT	3 cut(s)	239, 371, 500
Alw21I	GWGCWC	1 cut(s)	533
Alw26I	GTCTC	2 cut(s)	223, 590
AlwI	GGATC	1 cut(s)	521
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	3 cut(s)	64, 199, 469
ApeKI	GCWGC	3 cut(s)	371, 374, 422
ApoI	RAATTY	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	2 cut(s)	322, 510
AsuII	TTCGAA	1 cut(s)	279
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	533
BbvI	GCAGC	3 cut(s)	358, 361, 434
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	223, 590
BfaI	CTAG	4 cut(s)	44, 215, 491, 497
BfuAI	ACCTGC	1 cut(s)	341
BglII	AGATCT	1 cut(s)	487
BisI	GCNGC	3 cut(s)	372, 375, 423
BlsI	GCNGC	3 cut(s)	373, 376, 424
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	2 cut(s)	345, 408
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 632
Bse1I	ACTGG	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	2 cut(s)	221, 402
BseLI	CCNNNNNNNGG	2 cut(s)	62, 632
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	417
BseXI	GCAGC	3 cut(s)	358, 361, 434
BsgI	GTGCAG	1 cut(s)	441
BshFI	GGCC	3 cut(s)	66, 201, 471
BsiHKAI	GWGCWC	1 cut(s)	533
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	2 cut(s)	225, 317
BslI	CCNNNNNNNGG	2 cut(s)	62, 632
BsmAI	GTCTC	2 cut(s)	223, 590
BsnI	GGCC	3 cut(s)	66, 201, 471
BsoBI	CYCGRG	1 cut(s)	22
Bsp119I	TTCGAA	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp143I	GATC	4 cut(s)	327, 440, 487, 513
BspANI	GGCC	3 cut(s)	66, 201, 471
BspCNI	CTCAG	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	1 cut(s)	521
BspT104I	TTCGAA	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	4 cut(s)	327, 440, 487, 513
BssT1I	CCWWGG	1 cut(s)	61
Bst4CI	ACNGT	2 cut(s)	208, 448
BstBI	TTCGAA	1 cut(s)	279
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	221, 402
BstKTI	GATC	4 cut(s)	330, 443, 490, 516
BstMAI	GTCTC	2 cut(s)	223, 590
BstMBI	GATC	4 cut(s)	327, 440, 487, 513
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	224
BstV1I	GCAGC	3 cut(s)	358, 361, 434
BstX2I	RGATCY	2 cut(s)	487, 513
BstYI	RGATCY	2 cut(s)	487, 513
BsuRI	GGCC	3 cut(s)	66, 201, 471
BtsCI	GGATG	2 cut(s)	221, 402
BtsIMutI	CAGTG	1 cut(s)	424
BveI	ACCTGC	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	3 cut(s)	93, 358, 411
CviAII	CATG	5 cut(s)	355, 434, 509, 611, 616
CviQI	GTAC	3 cut(s)	93, 358, 411
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	4 cut(s)	329, 442, 489, 515
DpnII	GATC	4 cut(s)	327, 440, 487, 513
Eco130I	CCWWGG	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	2 cut(s)	68, 387
Eco88I	CYCGRG	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	350
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	5 cut(s)	358, 437, 512, 614, 619
FaiI	YATR	8 cut(s)	58, 71, 233, 356, 435, 510, 612, 617
FatI	CATG	5 cut(s)	354, 433, 508, 610, 615
Fnu4HI	GCNGC	3 cut(s)	372, 375, 423
FokI	GGATG	2 cut(s)	208, 389
Fsp4HI	GCNGC	3 cut(s)	372, 375, 423
FspBI	CTAG	4 cut(s)	44, 215, 491, 497
GluI	GCNGC	3 cut(s)	372, 375, 423
HaeIII	GGCC	3 cut(s)	66, 201, 471
HapII	CCGG	2 cut(s)	225, 317
Hin1II	CATG	5 cut(s)	358, 437, 512, 614, 619
HinfI	GANTC	2 cut(s)	190, 558
HpaII	CCGG	2 cut(s)	225, 317
HphI	GGTGA	2 cut(s)	322, 510
Hpy166II	GTNNAC	2 cut(s)	133, 177
Hpy188I	TCNGA	6 cut(s)	33, 189, 367, 387, 553, 574
Hpy188III	TCNNGA	2 cut(s)	194, 491
Hpy8I	GTNNAC	2 cut(s)	133, 177
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	3 cut(s)	168, 490, 569
HpyCH4III	ACNGT	2 cut(s)	208, 448
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	5 cut(s)	10, 267, 336, 422, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	5 cut(s)	358, 437, 512, 614, 619
Kzo9I	GATC	4 cut(s)	327, 440, 487, 513
LpnPI	CCDG	6 cut(s)	183, 238, 330, 346, 430, 498
Lsp1109I	GCAGC	3 cut(s)	358, 361, 434
LweI	GCATC	2 cut(s)	345, 408
MaeI	CTAG	4 cut(s)	44, 215, 491, 497
MaeII	ACGT	1 cut(s)	95
MalI	GATC	4 cut(s)	329, 442, 489, 515
MboI	GATC	4 cut(s)	327, 440, 487, 513
MboII	GAAGA	3 cut(s)	92, 334, 337
MfeI	CAATTG	1 cut(s)	262
MflI	RGATCY	2 cut(s)	487, 513
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	4 cut(s)	262, 350, 379, 603
MmeI	TCCRAC	2 cut(s)	74, 186
MnlI	CCTC	3 cut(s)	20, 222, 416
MseI	TTAA	1 cut(s)	290
MspI	CCGG	2 cut(s)	225, 317
MspR9I	CCNGG	1 cut(s)	226
MunI	CAATTG	1 cut(s)	262
MwoI	GCNNNNNNNGC	1 cut(s)	257
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	4 cut(s)	327, 440, 487, 513
NlaIII	CATG	5 cut(s)	358, 437, 512, 614, 619
NspV	TTCGAA	1 cut(s)	279
PaqCI	CACCTGC	1 cut(s)	341
PfeI	GAWTC	2 cut(s)	190, 558
PflMI	CCANNNNNTGG	1 cut(s)	632
PfoI	TCCNGGA	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	373, 376, 424
PspPI	GGNCC	1 cut(s)	40
PsuI	RGATCY	2 cut(s)	487, 513
RsaI	GTAC	3 cut(s)	94, 359, 412
RsaNI	GTAC	3 cut(s)	93, 358, 411
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	3 cut(s)	372, 375, 423
Sau3AI	GATC	4 cut(s)	327, 440, 487, 513
Sau96I	GGNCC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	533
SetI	ASST	8 cut(s)	31, 98, 241, 335, 373, 498, 502, 580
SfaNI	GCATC	2 cut(s)	345, 408
SfuI	TTCGAA	1 cut(s)	279
SinI	GGWCC	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	4 cut(s)	262, 350, 379, 603
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	4 cut(s)	44, 215, 491, 497
StyD4I	CCNGG	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	2 cut(s)	208, 448
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	4 cut(s)	272, 279, 439, 527
TasI	AATT	4 cut(s)	262, 350, 379, 603
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	2 cut(s)	190, 558
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	1 cut(s)	424
TseI	GCWGC	3 cut(s)	371, 374, 422
TspDTI	ATGAA	7 cut(s)	172, 320, 343, 363, 422, 632, 636
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	424
Van91I	CCANNNNNTGG	1 cut(s)	632
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	350
XbaI	TCTAGA	1 cut(s)	490
XspI	CTAG	4 cut(s)	44, 215, 491, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.