Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Reverse (-)

7480562 .. 7480876

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1090300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGAAAAACAACTTACAAGCCGTAGATTGGTGCACATAACTCCGATGCTTCAACTAGGCGCTATCCTTCACTCCAAGGGCTTCGACATCACAGTCGCTCACACTGACTTTAACTTTCTTGACCCATCAAACTACCTAGATTTCGATTTCTTAGAGATGTCCGATGGCTTATGCGAGCAAAACATCTCGTCCCACAACTTCATAGCTGCGATATCAGGCCTTAACGTCAACTGCAAATCCCCACTCCAGGAGTCATTGGCTCGGAAGATGGAGAGAGAGGACCGAAATAATAAGATTTCATGCATCATTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

105

Amino Acids

11.86

Weight (kDa)

5.72

Isoelectric Point (pI)

59.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	28, 247
AgsI	TTSAA	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
Alw21I	GWGCWC	1 cut(s)	36
Alw44I	GTGCAC	1 cut(s)	32
AoxI	GGCC	1 cut(s)	217
ApaLI	GTGCAC	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	280
BaeGI	GKGCMC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	3 cut(s)	133, 158, 262
BceAI	ACGGC	1 cut(s)	6
BciT130I	CCWGG	1 cut(s)	248
BfaI	CTAG	2 cut(s)	56, 137
BfoI	RGCGCY	1 cut(s)	63
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 247
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	28, 247
BseSI	GKGCMC	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	193
BshFI	GGCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	2 cut(s)	28, 247
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	151
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	176
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	280
CviAII	CATG	1 cut(s)	300
CviJI	RGCY	6 cut(s)	21, 81, 168, 206, 219, 260
CviKI_1	RGCY	6 cut(s)	21, 81, 168, 206, 219, 260
DdeI	CTNAG	1 cut(s)	151
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	75
Eco147I	AGGCCT	1 cut(s)	219
Eco32I	GATATC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	246
EcoRV	GATATC	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	75
EcoT22I	ATGCAT	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	303
FaiI	YATR	4 cut(s)	38, 172, 203, 301
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	1 cut(s)	299
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	2 cut(s)	56, 137
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	219
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	303
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	1 cut(s)	251
Hpy166II	GTNNAC	2 cut(s)	34, 229
Hpy188I	TCNGA	3 cut(s)	45, 163, 264
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	2 cut(s)	34, 229
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	34, 234, 303
HpyF3I	CTNAG	1 cut(s)	151
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	303
HspAI	GCGC	1 cut(s)	60
LpnPI	CCDG	3 cut(s)	201, 233, 260
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	2 cut(s)	56, 137
MaeII	ACGT	1 cut(s)	225
MboII	GAAGA	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	1 cut(s)	271
Mph1103I	ATGCAT	1 cut(s)	305
MseI	TTAA	2 cut(s)	111, 222
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
NlaIII	CATG	1 cut(s)	303
NsiI	ATGCAT	1 cut(s)	305
PceI	AGGCCT	1 cut(s)	219
PfoI	TCCNGGA	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspPI	GGNCC	1 cut(s)	280
SaqAI	TTAA	2 cut(s)	111, 222
SatI	GCNGC	1 cut(s)	207
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	3 cut(s)	138, 208, 228
SfaNI	GCATC	1 cut(s)	36
SinI	GGWCC	1 cut(s)	280
SseBI	AGGCCT	1 cut(s)	219
SspMI	CTAG	2 cut(s)	56, 137
StuI	AGGCCT	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	84, 144
TaqII	GACCGA	1 cut(s)	297
Tru1I	TTAA	2 cut(s)	111, 222
Tru9I	TTAA	2 cut(s)	111, 222
TscAI	CASTG	1 cut(s)	109
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	190, 288
TspRI	CASTG	1 cut(s)	109
VneI	GTGCAC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	280
XspI	CTAG	2 cut(s)	56, 137
Zsp2I	ATGCAT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.