Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Reverse (-)

6653982 .. 6654908

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1082500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGAAAAGGAAACACAGAGTAACAGGTTGGTCTTATTCCCATGTCCATTACAAGGTCACATAAGTCCAATGCTTCAGCTGGGTTCCTTCCTTCACTCAAGGGGCTTTTCCATCACTTTTATTCACACCCAATTCAACTCCCCTAACCCTTCAAACCACCCGGATTTTACCTTCTTTCCAATACAAGATGGCTTGACTGCTAAAGAGATCTCATCTGGGAATTTAGTAGCCATTCTGCTGGCTATAAATGCCAACTGCAAAGCGAGTTTCCGACAACGCTTGACTCAAGTTATGGAACAGGAACCCGAGAACAAAATCACCTGCGTTATCTATGATGACTTTATGTACTTCACCGAAGCTGTGGCTAAGGATCTAAACATCCCAAATATCATGTTACGAACTACCAGCGTTACAAATTTTCTAGCTCGTACTGCTGTCCTACAACTTCGTTCAAAAGGTCACATCCCATTCCCAGTCTCTCAGTCATTGAGTCCGGTGCCCGGGTTTCATCCCCTCAGGTTGAAAGATCTACCCACCTCCAACTTTGACACATTCGAAAAGTACTCAGAACTAGTCGTTAATGTATGCGATGTTAGGACTGCATCAGCAATCGTTTGGAACACCACTGATTGTCTTGAACAATCATCACTAGCACAGATCCAGCAACAATGCCCAGTTCCAAAGTTTTCCATAGGTCCTTTACACAAGATTGAAGCAGCAGCTTCTAGTAGCTTACTAGAAGTGGACACCAGCTGCATTGCGTGGCTCGACAAGCAATCTAACAACTCGGTTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

266

Amino Acids

29.52

Weight (kDa)

6.15

Isoelectric Point (pI)

60.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	329
Acc36I	ACCTGC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	496
AclWI	GGATC	2 cut(s)	378, 652
AcsI	RAATTY	2 cut(s)	220, 415
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	3 cut(s)	347, 430, 563
AfiI	CCNNNNNNNGG	2 cut(s)	53, 500
AgsI	TTSAA	6 cut(s)	136, 153, 453, 523, 638, 713
AhlI	ACTAGT	1 cut(s)	571
AluBI	AGCT	6 cut(s)	79, 359, 425, 722, 732, 753
AluI	AGCT	6 cut(s)	79, 359, 425, 722, 732, 753
Alw26I	GTCTC	1 cut(s)	481
AlwI	GGATC	2 cut(s)	378, 652
Ama87I	CYCGRG	2 cut(s)	305, 500
ApeKI	GCWGC	3 cut(s)	716, 719, 753
ApoI	RAATTY	2 cut(s)	220, 415
AspS9I	GGNCC	1 cut(s)	695
AsuC2I	CCSGG	3 cut(s)	161, 501, 502
AsuHPI	GGTGA	2 cut(s)	310, 343
AsuII	TTCGAA	1 cut(s)	555
AvaI	CYCGRG	2 cut(s)	305, 500
AvaII	GGWCC	1 cut(s)	695
AxyI	CCTNAGG	1 cut(s)	515
BaeGI	GKGCMC	1 cut(s)	501
BanI	GGYRCC	1 cut(s)	496
BbvI	GCAGC	3 cut(s)	728, 731, 740
BccI	CCATC	2 cut(s)	119, 182
BcnI	CCSGG	3 cut(s)	161, 501, 502
BcoDI	GTCTC	1 cut(s)	481
BcuI	ACTAGT	1 cut(s)	571
BfaI	CTAG	6 cut(s)	422, 572, 650, 726, 737, 796
BfuAI	ACCTGC	1 cut(s)	329
BglII	AGATCT	2 cut(s)	207, 526
BisI	GCNGC	3 cut(s)	717, 720, 754
BlsI	GCNGC	3 cut(s)	718, 721, 755
BmcAI	AGTACT	1 cut(s)	563
Bme1390I	CCNGG	3 cut(s)	161, 501, 502
Bme18I	GGWCC	1 cut(s)	695
BmeT110I	CYCGRG	2 cut(s)	305, 500
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	3 cut(s)	85, 303, 498
BmrFI	CCNGG	3 cut(s)	161, 501, 502
BmrI	ACTGGG	2 cut(s)	467, 668
BmsI	GCATC	1 cut(s)	611
BmuI	ACTGGG	2 cut(s)	467, 668
Bpu10I	CCTNAGC	1 cut(s)	366
Bpu14I	TTCGAA	1 cut(s)	555
BpuEI	CTTGAG	2 cut(s)	82, 270
BpuMI	CCSGG	3 cut(s)	161, 501, 502
BsaJI	CCNNGG	1 cut(s)	500
BsaWI	WCCGGW	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 500
Bse1I	ACTGG	2 cut(s)	473, 674
Bse21I	CCTNAGG	1 cut(s)	515
Bse3DI	GCAATG	1 cut(s)	756
BseDI	CCNNGG	1 cut(s)	500
BseGI	GGATG	3 cut(s)	378, 462, 508
BseLI	CCNNNNNNNGG	2 cut(s)	53, 500
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	3 cut(s)	494, 529, 579
BseNI	ACTGG	2 cut(s)	473, 674
BseSI	GKGCMC	1 cut(s)	501
BseXI	GCAGC	3 cut(s)	728, 731, 740
BseYI	CCCAGC	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	496
BsiHKCI	CYCGRG	2 cut(s)	305, 500
BsiSI	CCGG	3 cut(s)	161, 494, 501
BslI	CCNNNNNNNGG	2 cut(s)	53, 500
BsmAI	GTCTC	1 cut(s)	481
BsoBI	CYCGRG	2 cut(s)	305, 500
Bsp119I	TTCGAA	1 cut(s)	555
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp143I	GATC	4 cut(s)	207, 370, 526, 657
BspCNI	CTCAG	3 cut(s)	493, 528, 578
BspLI	GGNNCC	3 cut(s)	85, 303, 498
BspMI	ACCTGC	1 cut(s)	329
BspPI	GGATC	2 cut(s)	378, 652
BspT104I	TTCGAA	1 cut(s)	555
BspT107I	GGYRCC	1 cut(s)	496
BsrDI	GCAATG	1 cut(s)	756
BsrI	ACTGG	2 cut(s)	473, 674
BssECI	CCNNGG	1 cut(s)	500
BssMI	GATC	4 cut(s)	207, 370, 526, 657
BstBI	TTCGAA	1 cut(s)	555
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	4 cut(s)	366, 480, 515, 565
BstF5I	GGATG	3 cut(s)	378, 462, 508
BstKTI	GATC	4 cut(s)	210, 373, 529, 660
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	4 cut(s)	207, 370, 526, 657
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 431, 772
BstSCI	CCNGG	3 cut(s)	159, 499, 500
BstSLI	GKGCMC	1 cut(s)	501
BstV1I	GCAGC	3 cut(s)	728, 731, 740
BstX2I	RGATCY	4 cut(s)	207, 370, 526, 657
BstXI	CCANNNNNNTGG	1 cut(s)	238
BstYI	RGATCY	4 cut(s)	207, 370, 526, 657
Bsu36I	CCTNAGG	1 cut(s)	515
BtgZI	GCGATG	1 cut(s)	603
BtsCI	GGATG	3 cut(s)	378, 462, 508
BtsIMutI	CAGTG	1 cut(s)	624
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	695
Cfr9I	CCCGGG	1 cut(s)	500
Csp6I	GTAC	3 cut(s)	346, 429, 562
CviAII	CATG	2 cut(s)	42, 391
CviQI	GTAC	3 cut(s)	346, 429, 562
DdeI	CTNAG	4 cut(s)	366, 480, 515, 565
DpnI	GATC	4 cut(s)	209, 372, 528, 659
DpnII	GATC	4 cut(s)	207, 370, 526, 657
Eco47I	GGWCC	1 cut(s)	695
Eco57I	CTGAAG	1 cut(s)	59
Eco81I	CCTNAGG	1 cut(s)	515
Eco88I	CYCGRG	2 cut(s)	305, 500
EcoO109I	RGGNCCY	1 cut(s)	695
FaeI	CATG	2 cut(s)	45, 394
FaiI	YATR	9 cut(s)	43, 62, 245, 293, 333, 344, 392, 586, 692
FatI	CATG	2 cut(s)	41, 390
Fnu4HI	GCNGC	3 cut(s)	717, 720, 754
FokI	GGATG	3 cut(s)	365, 449, 495
Fsp4HI	GCNGC	3 cut(s)	717, 720, 754
FspBI	CTAG	6 cut(s)	422, 572, 650, 726, 737, 796
GluI	GCNGC	3 cut(s)	717, 720, 754
GsaI	CCCAGC	1 cut(s)	83
HapII	CCGG	3 cut(s)	161, 494, 501
Hin1II	CATG	2 cut(s)	45, 394
HinfI	GANTC	2 cut(s)	283, 490
HpaII	CCGG	3 cut(s)	161, 494, 501
HphI	GGTGA	2 cut(s)	310, 343
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	2 cut(s)	272, 568
Hpy188III	TCNNGA	1 cut(s)	635
Hpy8I	GTNNAC	1 cut(s)	745
HpyAV	CCTTC	4 cut(s)	97, 101, 159, 181
HpyCH4V	TGCA	3 cut(s)	258, 602, 756
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 431, 772
HpyF3I	CTNAG	4 cut(s)	366, 480, 515, 565
Hsp92II	CATG	2 cut(s)	45, 394
Kzo9I	GATC	4 cut(s)	207, 370, 526, 657
Lsp1109I	GCAGC	3 cut(s)	728, 731, 740
LweI	GCATC	1 cut(s)	611
MaeI	CTAG	6 cut(s)	422, 572, 650, 726, 737, 796
MaeIII	GTNAC	5 cut(s)	20, 56, 393, 409, 458
MalI	GATC	4 cut(s)	209, 372, 528, 659
MboI	GATC	4 cut(s)	207, 370, 526, 657
MflI	RGATCY	4 cut(s)	207, 370, 526, 657
MhlI	GDGCHC	1 cut(s)	501
MluCI	AATT	3 cut(s)	131, 220, 415
MlyI	GAGTC	2 cut(s)	277, 499
MmeI	TCCRAC	2 cut(s)	295, 564
MnlI	CCTC	2 cut(s)	524, 547
MseI	TTAA	1 cut(s)	579
MspA1I	CMGCKG	2 cut(s)	79, 753
MspI	CCGG	3 cut(s)	161, 494, 501
MspR9I	CCNGG	3 cut(s)	161, 501, 502
MwoI	GCNNNNNNNGC	3 cut(s)	248, 431, 772
NciI	CCSGG	3 cut(s)	161, 501, 502
NdeII	GATC	4 cut(s)	207, 370, 526, 657
NlaIII	CATG	2 cut(s)	45, 394
NlaIV	GGNNCC	3 cut(s)	85, 303, 498
NmuCI	GTSAC	2 cut(s)	56, 458
NspV	TTCGAA	1 cut(s)	555
PaqCI	CACCTGC	1 cut(s)	329
PkrI	GCNGC	3 cut(s)	718, 721, 755
PleI	GAGTC	2 cut(s)	277, 498
PpsI	GAGTC	2 cut(s)	277, 498
PpuMI	RGGWCCY	1 cut(s)	695
Psp5II	RGGWCCY	1 cut(s)	695
PspFI	CCCAGC	1 cut(s)	79
PspN4I	GGNNCC	3 cut(s)	85, 303, 498
PspPI	GGNCC	1 cut(s)	695
PspPPI	RGGWCCY	1 cut(s)	695
PsuI	RGATCY	4 cut(s)	207, 370, 526, 657
PvuII	CAGCTG	2 cut(s)	79, 753
RsaI	GTAC	3 cut(s)	347, 430, 563
RsaNI	GTAC	3 cut(s)	346, 429, 562
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	3 cut(s)	717, 720, 754
Sau3AI	GATC	4 cut(s)	207, 370, 526, 657
Sau96I	GGNCC	1 cut(s)	695
ScaI	AGTACT	1 cut(s)	563
SchI	GAGTC	2 cut(s)	277, 499
ScrFI	CCNGG	3 cut(s)	161, 501, 502
SduI	GDGCHC	1 cut(s)	501
SfaNI	GCATC	1 cut(s)	611
SfuI	TTCGAA	1 cut(s)	555
SinI	GGWCC	1 cut(s)	695
SmaI	CCCGGG	1 cut(s)	502
SmlI	CTYRAG	2 cut(s)	97, 285
SmoI	CTYRAG	2 cut(s)	97, 285
SpeI	ACTAGT	1 cut(s)	571
Sse9I	AATT	3 cut(s)	131, 220, 415
SspMI	CTAG	6 cut(s)	422, 572, 650, 726, 737, 796
StyD4I	CCNGG	3 cut(s)	159, 499, 500
TaqI	TCGA	2 cut(s)	555, 768
TasI	AATT	3 cut(s)	131, 220, 415
TatI	WGTACW	2 cut(s)	345, 561
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	1 cut(s)	631
TseFI	GTSAC	2 cut(s)	56, 458
TseI	GCWGC	3 cut(s)	716, 719, 753
Tsp45I	GTSAC	2 cut(s)	56, 458
TspDTI	ATGAA	1 cut(s)	497
TspMI	CCCGGG	1 cut(s)	500
TspRI	CASTG	1 cut(s)	631
VpaK11BI	GGWCC	1 cut(s)	695
XapI	RAATTY	2 cut(s)	220, 415
XmaI	CCCGGG	1 cut(s)	500
XspI	CTAG	6 cut(s)	422, 572, 650, 726, 737, 796
ZrmI	AGTACT	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.