Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Forward (+)

682869 .. 684384

Gene Structure 1516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G008700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGAAAAACAACATAGATGCCGCAGATTGGTTCTGGTTCCATGCCCATTCCAAGGGCACATGACTCCGATGCTTCAACTCGGCACTATCCTTCACTCCAGGGGCTTCTACATCACAATCGCTCACACCCAGTTCAACTTTCCCAACCCACTGAACTTCCCTGATTTCAACTTCTTAGAGATATATGAAGATGTGATATCGGGTTTTAATGCCAACTGCAAAGCCCCGCTCCGGGAGTCATTGGCTCGGATGATGGAGAAAGAGGATCAACATAGTAAGATTGCATGCATCATCTATGATGAATACATCAGTGCAGCAAACATGCTGACTTACCAAGAAATTCCTAGGCTCCTAAAAGATGATCTCTGGTACTCGACCTATGTGGGTGCAGAAGCTATGATGCTGGAACTGGTACCAGGCCTTGAACCGCTCAGATTTAAAGACCTACCAATTACCAATTTCAGAGATTTGGATGACTTACCGCAACTAATAGTGAACGCCCACGATTCAAGGTCATATTCGGCCATCATTTGGAACACCATGGACTGCCTCGAACAATCATCATTGGCACATCTCCGGCAAGAATACCAACTTCCATTGTTTCCTATCGGTCCTCTGCACAGAACTATTCCCGCCCCCTCCATCAGCTTATTGAAAGAGGACCAGAATTGCATTTCATGGCTGGACAAACAATCACACAACTCTGTCATCTATGTAAGCGTGGGAAGCATAGCCTTCTTGGACAGTAAAGAACTAGCAGAAATGGCGTGGGGTCTGGCCAACAGTGAGCACCCTTTCTTGTGGGTGGTTCGAACCGACTCTATATCATTGCCAGAAAGTTTCCAAGAAACTGTTGGAGAAAGGGGTTGCATAACGAAATGGGCACCCCAAAAGCAGGTCTTGGCACACAGCGCAGTGGGAGGGTTTTGGAGCCATTGCGGTTGGAACTCAACCATTGAAAGCATCTCTGAAGGAGTTCCAATGATATGCCAACCATATTTTGGGGACCAAAGAGTGAACTCAAGGTACTTGAGCCTAGTATGGGGTGTAGGGTTGGAATGGGAGAATGACATGAACAGAGGACCAATAAAGGAAGCTATAAGAATGCTTATGGTGGGCAAAGAAGGGGAAGTGATAAGGCAAAGTGCAAAAGATTTGAAGGTGAAAATCGAACTTTCTATGAAGCAAGCCGTTTCTTCCTACAATTCCTTGAATGAATTGGTAGACCAAATCTTGTCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

415

Amino Acids

47.25

Weight (kDa)

5.42

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	886
Acc65I	GGTACC	1 cut(s)	412
AccB1I	GGYRCC	2 cut(s)	412, 883
AccB7I	CCANNNNNTGG	2 cut(s)	531, 1001
AccBSI	CCGCTC	2 cut(s)	229, 430
AccI	GTMKAC	1 cut(s)	1224
AciI	CCGC	6 cut(s)	22, 227, 428, 482, 633, 939
AclWI	GGATC	1 cut(s)	273
AcoI	YGGCCR	2 cut(s)	522, 777
AcsI	RAATTY	1 cut(s)	339
AcuI	CTGAAG	1 cut(s)	990
AfaI	GTAC	3 cut(s)	371, 414, 1028
AfiI	CCNNNNNNNGG	8 cut(s)	28, 53, 231, 232, 531, 895, 1001, 1042
AgsI	TTSAA	9 cut(s)	77, 136, 169, 425, 510, 655, 959, 1159, 1213
AjnI	CCWGG	2 cut(s)	98, 415
AluBI	AGCT	3 cut(s)	395, 648, 1097
AluI	AGCT	3 cut(s)	395, 648, 1097
Alw21I	GWGCWC	1 cut(s)	792
AlwI	GGATC	1 cut(s)	273
AoxI	GGCC	3 cut(s)	418, 522, 777
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	339
Asp700I	GAANNNNTTC	1 cut(s)	975
Asp718I	GGTACC	1 cut(s)	412
AspA2I	CCTAGG	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	914
AspS9I	GGNCC	4 cut(s)	611, 661, 1006, 1082
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	1174
AsuII	TTCGAA	1 cut(s)	811
AvaII	GGWCC	4 cut(s)	611, 661, 1006, 1082
AvrII	CCTAGG	1 cut(s)	344
BaeGI	GKGCMC	2 cut(s)	60, 886
BalI	TGGCCA	1 cut(s)	779
BanI	GGYRCC	2 cut(s)	412, 883
Bbv12I	GWGCWC	1 cut(s)	792
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	3 cut(s)	247, 533, 650
BceAI	ACGGC	1 cut(s)	1175
BciT130I	CCWGG	2 cut(s)	100, 417
BcnI	CCSGG	1 cut(s)	233
BfaI	CTAG	3 cut(s)	345, 755, 1037
BfuAI	ACCTGC	1 cut(s)	886
BisI	GCNGC	2 cut(s)	22, 315
BlnI	CCTAGG	1 cut(s)	344
BlsI	GCNGC	2 cut(s)	23, 316
Bme1390I	CCNGG	3 cut(s)	100, 233, 417
Bme18I	GGWCC	4 cut(s)	611, 661, 1006, 1082
BmgT120I	GGNCC	4 cut(s)	611, 661, 1006, 1082
BmiI	GGNNCC	6 cut(s)	39, 350, 414, 885, 932, 1007
BmrFI	CCNGG	3 cut(s)	100, 233, 417
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	5 cut(s)	8, 60, 297, 390, 972
BmuI	ACTGGG	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	82
Bpu14I	TTCGAA	1 cut(s)	811
BpuEI	CTTGAG	2 cut(s)	1006, 1051
BpuMI	CCSGG	1 cut(s)	233
BsaJI	CCNNGG	4 cut(s)	52, 99, 344, 540
Bsc4I	CCNNNNNNNGG	8 cut(s)	28, 53, 231, 232, 531, 895, 1001, 1042
Bse1I	ACTGG	2 cut(s)	130, 414
Bse3DI	GCAATG	2 cut(s)	827, 934
BseBI	CCWGG	2 cut(s)	100, 417
BseDI	CCNNGG	4 cut(s)	52, 99, 344, 540
BseGI	GGATG	2 cut(s)	255, 478
BseLI	CCNNNNNNNGG	8 cut(s)	28, 53, 231, 232, 531, 895, 1001, 1042
BseMI	GCAATG	2 cut(s)	827, 934
BseMII	CTCAG	1 cut(s)	445
BseNI	ACTGG	2 cut(s)	130, 414
BseSI	GKGCMC	2 cut(s)	60, 886
BseXI	GCAGC	1 cut(s)	326
BsgI	GTGCAG	3 cut(s)	333, 408, 602
BshFI	GGCC	3 cut(s)	420, 524, 779
BshNI	GGYRCC	2 cut(s)	412, 883
BsiHKAI	GWGCWC	1 cut(s)	792
BsiSI	CCGG	2 cut(s)	232, 577
BslFI	GGGAC	1 cut(s)	1019
BslI	CCNNNNNNNGG	8 cut(s)	28, 53, 231, 232, 531, 895, 1001, 1042
BsmFI	GGGAC	1 cut(s)	1019
BsmI	GAATGC	1 cut(s)	1110
BsnI	GGCC	3 cut(s)	420, 524, 779
Bsp119I	TTCGAA	1 cut(s)	811
Bsp1286I	GDGCHC	3 cut(s)	60, 792, 886
Bsp143I	GATC	2 cut(s)	265, 361
Bsp19I	CCATGG	1 cut(s)	540
BspACI	CCGC	6 cut(s)	22, 227, 428, 482, 633, 939
BspANI	GGCC	3 cut(s)	420, 524, 779
BspCNI	CTCAG	1 cut(s)	444
BspLI	GGNNCC	6 cut(s)	39, 350, 414, 885, 932, 1007
BspMI	ACCTGC	1 cut(s)	886
BspPI	GGATC	1 cut(s)	273
BspT104I	TTCGAA	1 cut(s)	811
BspT107I	GGYRCC	2 cut(s)	412, 883
BsrBI	CCGCTC	2 cut(s)	229, 430
BsrDI	GCAATG	2 cut(s)	827, 934
BsrI	ACTGG	2 cut(s)	130, 414
BssECI	CCNNGG	4 cut(s)	52, 99, 344, 540
BssMI	GATC	2 cut(s)	265, 361
BssT1I	CCWWGG	3 cut(s)	52, 344, 540
Bst2UI	CCWGG	2 cut(s)	100, 417
Bst4CI	ACNGT	3 cut(s)	746, 785, 853
BstBI	TTCGAA	1 cut(s)	811
BstC8I	GCNNGC	2 cut(s)	286, 1188
BstDEI	CTNAG	2 cut(s)	175, 431
BstDSI	CCRYGG	1 cut(s)	540
BstF5I	GGATG	2 cut(s)	255, 478
BstHHI	GCGC	1 cut(s)	914
BstKTI	GATC	2 cut(s)	268, 364
BstMBI	GATC	2 cut(s)	265, 361
BstMWI	GCNNNNNNNGC	3 cut(s)	726, 764, 911
BstNI	CCWGG	2 cut(s)	100, 417
BstNSI	RCATGY	2 cut(s)	288, 325
BstSCI	CCNGG	3 cut(s)	98, 231, 415
BstSLI	GKGCMC	2 cut(s)	60, 886
BstV1I	GCAGC	1 cut(s)	326
BsuRI	GGCC	3 cut(s)	420, 524, 779
BtgI	CCRYGG	1 cut(s)	540
BtsCI	GGATG	2 cut(s)	255, 478
BtsI	GCAGTG	1 cut(s)	921
BtsIMutI	CAGTG	4 cut(s)	149, 316, 790, 921
BveI	ACCTGC	1 cut(s)	886
Cac8I	GCNNGC	2 cut(s)	286, 1188
CfoI	GCGC	1 cut(s)	914
Cfr13I	GGNCC	4 cut(s)	611, 661, 1006, 1082
Csp6I	GTAC	3 cut(s)	370, 413, 1027
CviAII	CATG	7 cut(s)	42, 61, 285, 322, 541, 678, 1072
CviQI	GTAC	3 cut(s)	370, 413, 1027
DdeI	CTNAG	2 cut(s)	175, 431
DpnI	GATC	2 cut(s)	267, 363
DpnII	GATC	2 cut(s)	265, 361
DraI	TTTAAA	1 cut(s)	439
EaeI	YGGCCR	2 cut(s)	522, 777
Eco130I	CCWWGG	3 cut(s)	52, 344, 540
Eco147I	AGGCCT	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	198
Eco47I	GGWCC	4 cut(s)	611, 661, 1006, 1082
Eco57I	CTGAAG	1 cut(s)	990
EcoRII	CCWGG	2 cut(s)	98, 415
EcoRV	GATATC	1 cut(s)	198
EcoT14I	CCWWGG	3 cut(s)	52, 344, 540
EcoT22I	ATGCAT	1 cut(s)	290
ErhI	CCWWGG	3 cut(s)	52, 344, 540
FaeI	CATG	7 cut(s)	45, 64, 288, 325, 544, 681, 1075
FalI	AAGNNNNNCTT	2 cut(s)	884, 916
FaqI	GGGAC	1 cut(s)	1019
FatI	CATG	7 cut(s)	41, 60, 284, 321, 540, 677, 1071
FauI	CCCGC	2 cut(s)	234, 640
FblI	GTMKAC	1 cut(s)	1224
Fnu4HI	GCNGC	2 cut(s)	22, 315
FokI	GGATG	2 cut(s)	262, 485
Fsp4HI	GCNGC	2 cut(s)	22, 315
FspBI	CTAG	3 cut(s)	345, 755, 1037
GlaI	GCGC	1 cut(s)	913
GluI	GCNGC	2 cut(s)	22, 315
GsuI	CTGGAG	1 cut(s)	82
HaeIII	GGCC	3 cut(s)	420, 524, 779
HapII	CCGG	2 cut(s)	232, 577
HhaI	GCGC	1 cut(s)	914
Hin1II	CATG	7 cut(s)	45, 64, 288, 325, 544, 681, 1075
Hin6I	GCGC	1 cut(s)	912
HinP1I	GCGC	1 cut(s)	912
HinfI	GANTC	4 cut(s)	64, 236, 506, 818
HpaII	CCGG	2 cut(s)	232, 577
HphI	GGTGA	1 cut(s)	1174
Hpy166II	GTNNAC	3 cut(s)	496, 1018, 1225
Hpy188I	TCNGA	5 cut(s)	69, 249, 434, 464, 970
Hpy8I	GTNNAC	3 cut(s)	496, 1018, 1225
HpyAV	CCTTC	5 cut(s)	101, 745, 965, 1118, 1153
HpyCH4III	ACNGT	3 cut(s)	746, 785, 853
HpyCH4V	TGCA	9 cut(s)	219, 284, 288, 314, 389, 619, 672, 870, 1148
HpyF10VI	GCNNNNNNNGC	3 cut(s)	726, 764, 911
HpyF3I	CTNAG	2 cut(s)	175, 431
Hsp92II	CATG	7 cut(s)	45, 64, 288, 325, 544, 681, 1075
HspAI	GCGC	1 cut(s)	912
KpnI	GGTACC	1 cut(s)	416
Kzo9I	GATC	2 cut(s)	265, 361
LmnI	GCTCC	3 cut(s)	234, 354, 930
Lsp1109I	GCAGC	1 cut(s)	326
LweI	GCATC	5 cut(s)	8, 60, 297, 390, 972
MaeI	CTAG	3 cut(s)	345, 755, 1037
MalI	GATC	2 cut(s)	267, 363
MbiI	CCGCTC	2 cut(s)	229, 430
MboI	GATC	2 cut(s)	265, 361
MboII	GAAGA	2 cut(s)	200, 1188
MhlI	GDGCHC	3 cut(s)	60, 792, 886
MlsI	TGGCCA	1 cut(s)	779
MluCI	AATT	6 cut(s)	339, 450, 457, 667, 1204, 1217
MluNI	TGGCCA	1 cut(s)	779
MlyI	GAGTC	3 cut(s)	58, 245, 812
MmeI	TCCRAC	3 cut(s)	835, 923, 1035
MnlI	CCTC	7 cut(s)	256, 560, 624, 649, 652, 914, 1073
Mox20I	TGGCCA	1 cut(s)	779
Mph1103I	ATGCAT	1 cut(s)	290
MroXI	GAANNNNTTC	1 cut(s)	975
MscI	TGGCCA	1 cut(s)	779
MseI	TTAA	2 cut(s)	207, 438
Msp20I	TGGCCA	1 cut(s)	779
MspI	CCGG	2 cut(s)	232, 577
MspR9I	CCNGG	3 cut(s)	100, 233, 417
Mva1269I	GAATGC	1 cut(s)	1110
MvaI	CCWGG	2 cut(s)	100, 417
MwoI	GCNNNNNNNGC	3 cut(s)	726, 764, 911
NciI	CCSGG	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	540
NdeII	GATC	2 cut(s)	265, 361
NlaIII	CATG	7 cut(s)	45, 64, 288, 325, 544, 681, 1075
NlaIV	GGNNCC	6 cut(s)	39, 350, 414, 885, 932, 1007
NmeAIII	GCCGAG	1 cut(s)	60
NsiI	ATGCAT	1 cut(s)	290
NspI	RCATGY	2 cut(s)	288, 325
NspV	TTCGAA	1 cut(s)	811
PaeI	GCATGC	1 cut(s)	288
PceI	AGGCCT	1 cut(s)	420
PctI	GAATGC	1 cut(s)	1110
PdmI	GAANNNNTTC	1 cut(s)	975
PfeI	GAWTC	1 cut(s)	506
PflMI	CCANNNNNTGG	2 cut(s)	531, 1001
PfoI	TCCNGGA	1 cut(s)	231
PkrI	GCNGC	2 cut(s)	23, 316
PleI	GAGTC	3 cut(s)	58, 244, 812
PpsI	GAGTC	3 cut(s)	58, 244, 812
Psp6I	CCWGG	2 cut(s)	98, 415
PspGI	CCWGG	2 cut(s)	98, 415
PspN4I	GGNNCC	6 cut(s)	39, 350, 414, 885, 932, 1007
PspPI	GGNCC	4 cut(s)	611, 661, 1006, 1082
PsrI	GAACNNNNNNTAC	2 cut(s)	1010, 1042
RsaI	GTAC	3 cut(s)	371, 414, 1028
RsaNI	GTAC	3 cut(s)	370, 413, 1027
SaqAI	TTAA	2 cut(s)	207, 438
SatI	GCNGC	2 cut(s)	22, 315
Sau3AI	GATC	2 cut(s)	265, 361
Sau96I	GGNCC	4 cut(s)	611, 661, 1006, 1082
SchI	GAGTC	3 cut(s)	58, 245, 812
ScrFI	CCNGG	3 cut(s)	100, 233, 417
SduI	GDGCHC	3 cut(s)	60, 792, 886
SetI	ASST	9 cut(s)	380, 397, 447, 515, 650, 900, 1028, 1099, 1164
SfaNI	GCATC	5 cut(s)	8, 60, 297, 390, 972
SfuI	TTCGAA	1 cut(s)	811
SinI	GGWCC	4 cut(s)	611, 661, 1006, 1082
SmlI	CTYRAG	2 cut(s)	1021, 1030
SmoI	CTYRAG	2 cut(s)	1021, 1030
SphI	GCATGC	1 cut(s)	288
Sse9I	AATT	6 cut(s)	339, 450, 457, 667, 1204, 1217
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	6 cut(s)	22, 227, 428, 482, 633, 939
SspMI	CTAG	3 cut(s)	345, 755, 1037
StuI	AGGCCT	1 cut(s)	420
StyD4I	CCNGG	3 cut(s)	98, 231, 415
StyI	CCWWGG	3 cut(s)	52, 344, 540
TaaI	ACNGT	3 cut(s)	746, 785, 853
TaqI	TCGA	4 cut(s)	374, 552, 811, 1170
TaqII	GACCGA	1 cut(s)	599
TasI	AATT	6 cut(s)	339, 450, 457, 667, 1204, 1217
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	2 cut(s)	207, 438
Tru9I	TTAA	2 cut(s)	207, 438
TscAI	CASTG	4 cut(s)	156, 316, 790, 921
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	6 cut(s)	201, 315, 666, 1088, 1196, 1230
TspRI	CASTG	4 cut(s)	156, 316, 790, 921
Van91I	CCANNNNNTGG	2 cut(s)	531, 1001
VpaK11BI	GGWCC	4 cut(s)	611, 661, 1006, 1082
XapI	RAATTY	1 cut(s)	339
XceI	RCATGY	2 cut(s)	288, 325
XcmI	CCANNNNNNNNNTGG	2 cut(s)	851, 998
XmaJI	CCTAGG	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	1224
XmnI	GAANNNNTTC	1 cut(s)	975
XspI	CTAG	3 cut(s)	345, 755, 1037
Zsp2I	ATGCAT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.