Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Forward (+)

73306882 .. 73313134

Gene Structure 6253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035911

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAATATCGACAAGAGATATGCCGCAGAGTGGTGCTGGTTCCTCTGCCCTTTCAAGGCCACATAACCCCAATGCTTCATCTGGGCACCATCCTTCATTCCAAAGGCTTTCATATCACAATCGCTCATACCCAGTTCAACTTTCCCAACCCGATGAACTACCCTCATTTCGACTTCTTAGAGTTGTACGATGGCATATGTGAGCAAAATATATCAGCCTTTATAGCCGTGATATCAGGTTTCAACACCAACTGCAAAGGCCATCTCCGGGAATCGCTGGCTAGGATAATGGAGAAAGTGGATCTACACAATAAGATTGCTTGCATCATCTATGATGAATATATGTACTTTGCAGAAGAGATGGCCAATTATCTTAGGATTCCTAGTATCATATTGTCTACTAGCAGTGCAGCGAAGACGCTAAGTTACCTTGCACATCCTAGGCTACAAAACGATGGTTACATTCCCTGTCAGGCCATCATCTGGAACTCCATGGATTGCCTTGAGCAATCAACATTGACAAGGATCCAGCAGGAATACCAACTTCCGCTGTTCCCCATCGGCCCTCTCAACAAAACTGTTCCGGCCATATCCATCAGCTTATTGAAAGAGGACCAGAGTTGCATTCCATGGCTTGACAAACAATCACACAACTCTGTCATCTACATAAGCCTCGGAAGCGCAGCTTCCATGGACAATAAAGACCTAGTTGAAATGGCATGGGGTCTCTCCAACAGCGAGCAGCCTTTCTTGTGGGTGGTCCGAACGGACTCCACAGCAATGCCAGAAGGTTTCCAAGAAGCTGTGTTGGAGACGGGGGTCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

276

Amino Acids

31.19

Weight (kDa)

5.41

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AccB7I	CCANNNNNTGG	1 cut(s)	483
AccI	GTMKAC	1 cut(s)	398
AciI	CCGC	2 cut(s)	25, 548
AclWI	GGATC	3 cut(s)	309, 520, 533
AcoI	YGGCCR	2 cut(s)	363, 585
AfaI	GTAC	2 cut(s)	188, 347
AfiI	CCNNNNNNNGG	4 cut(s)	31, 56, 268, 483
AgsI	TTSAA	5 cut(s)	56, 139, 244, 607, 713
AluBI	AGCT	3 cut(s)	600, 686, 803
AluI	AGCT	3 cut(s)	600, 686, 803
Alw26I	GTCTC	2 cut(s)	731, 806
AlwI	GGATC	3 cut(s)	309, 520, 533
AoxI	GGCC	6 cut(s)	58, 259, 363, 474, 562, 585
ApeKI	GCWGC	3 cut(s)	410, 683, 742
AspA2I	CCTAGG	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	683
AspS9I	GGNCC	3 cut(s)	563, 613, 760
AsuC2I	CCSGG	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	613, 760
AvrII	CCTAGG	1 cut(s)	440
BaeGI	GKGCMC	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	365
BamHI	GGATCC	1 cut(s)	525
BanI	GGYRCC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	422
BbvI	GCAGC	3 cut(s)	422, 695, 754
BccI	CCATC	8 cut(s)	98, 185, 270, 355, 449, 485, 566, 602
BceAI	ACGGC	1 cut(s)	212
BcnI	CCSGG	1 cut(s)	269
BcoDI	GTCTC	2 cut(s)	731, 806
BfaI	CTAG	5 cut(s)	282, 384, 402, 441, 707
BisI	GCNGC	4 cut(s)	25, 411, 684, 743
BlnI	CCTAGG	1 cut(s)	440
BlsI	GCNGC	4 cut(s)	26, 412, 685, 744
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	2 cut(s)	613, 760
BmgT120I	GGNCC	3 cut(s)	563, 613, 760
BmiI	GGNNCC	3 cut(s)	42, 88, 527
BmrFI	CCNGG	1 cut(s)	269
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	127
BoxI	GACNNNNGTC	1 cut(s)	818
BpiI	GAAGAC	1 cut(s)	422
BpuEI	CTTGAG	1 cut(s)	524
BpuMI	CCSGG	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	731
BsaJI	CCNNGG	5 cut(s)	440, 492, 629, 673, 690
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 56, 268, 483
Bse1I	ACTGG	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	786
BseDI	CCNNGG	5 cut(s)	440, 492, 629, 673, 690
BseGI	GGATG	2 cut(s)	90, 436
BseLI	CCNNNNNNNGG	4 cut(s)	31, 56, 268, 483
BseMI	GCAATG	1 cut(s)	786
BseNI	ACTGG	1 cut(s)	133
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	3 cut(s)	422, 695, 754
BsgI	GTGCAG	1 cut(s)	429
BshFI	GGCC	6 cut(s)	60, 261, 365, 476, 564, 587
BshNI	GGYRCC	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	268, 584
BslI	CCNNNNNNNGG	4 cut(s)	31, 56, 268, 483
BsmAI	GTCTC	2 cut(s)	731, 806
BsmBI	CGTCTC	1 cut(s)	806
BsmI	GAATGC	1 cut(s)	624
BsnI	GGCC	6 cut(s)	60, 261, 365, 476, 564, 587
Bso31I	GGTCTC	1 cut(s)	731
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	301, 525
Bsp19I	CCATGG	3 cut(s)	492, 629, 690
BspACI	CCGC	2 cut(s)	25, 548
BspANI	GGCC	6 cut(s)	60, 261, 365, 476, 564, 587
BspLI	GGNNCC	3 cut(s)	42, 88, 527
BspPI	GGATC	3 cut(s)	309, 520, 533
BspT107I	GGYRCC	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	731
BsrDI	GCAATG	1 cut(s)	786
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	5 cut(s)	440, 492, 629, 673, 690
BssMI	GATC	2 cut(s)	301, 525
BssT1I	CCWWGG	4 cut(s)	440, 492, 629, 690
Bst4CI	ACNGT	1 cut(s)	580
Bst6I	CTCTTC	1 cut(s)	351
BstC8I	GCNNGC	3 cut(s)	279, 322, 740
BstDEI	CTNAG	3 cut(s)	178, 374, 422
BstDSI	CCRYGG	3 cut(s)	492, 629, 690
BstF5I	GGATG	2 cut(s)	90, 436
BstHHI	GCGC	1 cut(s)	683
BstKTI	GATC	2 cut(s)	304, 528
BstMAI	GTCTC	2 cut(s)	731, 806
BstMBI	GATC	2 cut(s)	301, 525
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 678
BstPAI	GACNNNNGTC	1 cut(s)	818
BstSCI	CCNGG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	89
BstV1I	GCAGC	3 cut(s)	422, 695, 754
BstV2I	GAAGAC	1 cut(s)	422
BstX2I	RGATCY	2 cut(s)	301, 525
BstYI	RGATCY	2 cut(s)	301, 525
BsuRI	GGCC	6 cut(s)	60, 261, 365, 476, 564, 587
BtgI	CCRYGG	3 cut(s)	492, 629, 690
BtsCI	GGATG	2 cut(s)	90, 436
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	3 cut(s)	279, 322, 740
CfoI	GCGC	1 cut(s)	683
Cfr13I	GGNCC	3 cut(s)	563, 613, 760
CseI	GACGC	1 cut(s)	427
Csp6I	GTAC	2 cut(s)	187, 346
CviAII	CATG	4 cut(s)	493, 630, 691, 720
CviQI	GTAC	2 cut(s)	187, 346
DdeI	CTNAG	3 cut(s)	178, 374, 422
DpnI	GATC	2 cut(s)	303, 527
DpnII	GATC	2 cut(s)	301, 525
EaeI	YGGCCR	2 cut(s)	363, 585
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	4 cut(s)	440, 492, 629, 690
Eco31I	GGTCTC	1 cut(s)	731
Eco32I	GATATC	1 cut(s)	234
Eco47I	GGWCC	2 cut(s)	613, 760
EcoRV	GATATC	1 cut(s)	234
EcoT14I	CCWWGG	4 cut(s)	440, 492, 629, 690
ErhI	CCWWGG	4 cut(s)	440, 492, 629, 690
Esp3I	CGTCTC	1 cut(s)	806
FaeI	CATG	4 cut(s)	496, 633, 694, 723
FalI	AAGNNNNNCTT	2 cut(s)	670, 702
FatI	CATG	4 cut(s)	492, 629, 690, 719
FauNDI	CATATG	1 cut(s)	197
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	4 cut(s)	25, 411, 684, 743
FokI	GGATG	2 cut(s)	77, 423
Fsp4HI	GCNGC	4 cut(s)	25, 411, 684, 743
FspBI	CTAG	5 cut(s)	282, 384, 402, 441, 707
GlaI	GCGC	1 cut(s)	682
GluI	GCNGC	4 cut(s)	25, 411, 684, 743
HaeIII	GGCC	6 cut(s)	60, 261, 365, 476, 564, 587
HapII	CCGG	2 cut(s)	268, 584
HgaI	GACGC	1 cut(s)	427
HhaI	GCGC	1 cut(s)	683
Hin1II	CATG	4 cut(s)	496, 633, 694, 723
Hin6I	GCGC	1 cut(s)	681
HinP1I	GCGC	1 cut(s)	681
HinfI	GANTC	3 cut(s)	272, 379, 770
HpaII	CCGG	2 cut(s)	268, 584
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	2 cut(s)	677, 764
Hpy188III	TCNNGA	1 cut(s)	484
Hpy8I	GTNNAC	1 cut(s)	399
HpyAV	CCTTC	2 cut(s)	104, 782
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4V	TGCA	6 cut(s)	255, 324, 353, 410, 434, 624
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 678
HpyF3I	CTNAG	3 cut(s)	178, 374, 422
Hsp92II	CATG	4 cut(s)	496, 633, 694, 723
HspAI	GCGC	1 cut(s)	681
Kzo9I	GATC	2 cut(s)	301, 525
Lsp1109I	GCAGC	3 cut(s)	422, 695, 754
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	5 cut(s)	282, 384, 402, 441, 707
MaeIII	GTNAC	2 cut(s)	425, 458
MalI	GATC	2 cut(s)	303, 527
MboI	GATC	2 cut(s)	301, 525
MboII	GAAGA	2 cut(s)	368, 427
MflI	RGATCY	2 cut(s)	301, 525
MhlI	GDGCHC	1 cut(s)	89
MlsI	TGGCCA	1 cut(s)	365
MluCI	AATT	1 cut(s)	367
MluNI	TGGCCA	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	764
MmeI	TCCRAC	2 cut(s)	756, 789
MnlI	CCTC	5 cut(s)	54, 174, 576, 604, 683
Mox20I	TGGCCA	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	365
MslI	CAYNNNNRTG	1 cut(s)	779
Msp20I	TGGCCA	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	550
MspI	CCGG	2 cut(s)	268, 584
MspR9I	CCNGG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	624
MwoI	GCNNNNNNNGC	2 cut(s)	224, 678
NciI	CCSGG	1 cut(s)	269
NcoI	CCATGG	3 cut(s)	492, 629, 690
NdeI	CATATG	1 cut(s)	197
NdeII	GATC	2 cut(s)	301, 525
NlaIII	CATG	4 cut(s)	496, 633, 694, 723
NlaIV	GGNNCC	3 cut(s)	42, 88, 527
PctI	GAATGC	1 cut(s)	624
PfeI	GAWTC	2 cut(s)	272, 379
PflMI	CCANNNNNTGG	1 cut(s)	483
PfoI	TCCNGGA	1 cut(s)	267
PkrI	GCNGC	4 cut(s)	26, 412, 685, 744
PleI	GAGTC	1 cut(s)	764
PpsI	GAGTC	1 cut(s)	764
PshAI	GACNNNNGTC	1 cut(s)	818
PspN4I	GGNNCC	3 cut(s)	42, 88, 527
PspPI	GGNCC	3 cut(s)	563, 613, 760
PsuI	RGATCY	2 cut(s)	301, 525
RsaI	GTAC	2 cut(s)	188, 347
RsaNI	GTAC	2 cut(s)	187, 346
RseI	CAYNNNNRTG	1 cut(s)	779
SatI	GCNGC	4 cut(s)	25, 411, 684, 743
Sau3AI	GATC	2 cut(s)	301, 525
Sau96I	GGNCC	3 cut(s)	563, 613, 760
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	7 cut(s)	241, 432, 602, 688, 708, 793, 805
SfaNI	GCATC	1 cut(s)	333
SinI	GGWCC	2 cut(s)	613, 760
SmiMI	CAYNNNNRTG	1 cut(s)	779
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	1 cut(s)	367
SsiI	CCGC	2 cut(s)	25, 548
SspMI	CTAG	5 cut(s)	282, 384, 402, 441, 707
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	4 cut(s)	440, 492, 629, 690
TaaI	ACNGT	1 cut(s)	580
TaqI	TCGA	2 cut(s)	10, 171
TasI	AATT	1 cut(s)	367
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	272, 379
TscAI	CASTG	1 cut(s)	412
TseI	GCWGC	3 cut(s)	410, 683, 742
TspDTI	ATGAA	5 cut(s)	68, 86, 101, 170, 351
TspGWI	ACGGA	1 cut(s)	782
TspRI	CASTG	1 cut(s)	412
Van91I	CCANNNNNTGG	1 cut(s)	483
VpaK11BI	GGWCC	2 cut(s)	613, 760
XmaJI	CCTAGG	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	398
XspI	CTAG	5 cut(s)	282, 384, 402, 441, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.