Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Forward (+)

66997660 .. 66999896

Gene Structure 2237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG480900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAATATCAACAAGAGAGATGCCGCAGAGTGGTGCTGGTTCCTCTGCCTTTTCAAGGCCACATAACCCCAATGCTTTATCTGGGCACTATCCTTCATTCCAAAGGCTTTCACATCACAATCGCTCATACCCAGTTAAACTTTCCCAACCCGCTGAACTACCCTCATTTCGACTTTTTAGAGTTGTCCAATGGCATATGTGAGCAAAATATATCTGCCCACAACTTTATAGCCGTGATATCAGGTTTCAACACCAACTGCAAAGGACATCTCCGGGAATCATTGGCTAGGATAATGGAGAAAGAGGACCAACACAATAAGATTGCTTGCATCATCTATGATGAATATATGTACTTTGCAGAAGAGGTGGCCAATTATCTAAGGATTCCTAGTATCATATTATGTACTAGCAGTGCAGCTAAGACGCTAAGTTACCTCGCAATTCCTAGGCTCCAAAACGATGGTTACATTCCCCTTCAAGATAATCTTGGCATATTAATACAGTTCCGCATTACGTTTAGAAGCACAAAGAATATCAGTAGCTGCAAGTTTCATAGTATAAAAGCAGTACTTGAAGAGAAATCCAATTTCACATTTTATAAGTTCATTGAAGCATTACAAACTGGCGAAACACAAACACATATAAAGACACAAACTTTACTCACATTCGTCAACCAGTGTCAAACTAATCTTATTTCACCCAGAACTGGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

238

Amino Acids

27.31

Weight (kDa)

8.14

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AciI	CCGC	3 cut(s)	25, 152, 508
AcoI	YGGCCR	1 cut(s)	369
AfaI	GTAC	3 cut(s)	353, 406, 570
AfiI	CCNNNNNNNGG	3 cut(s)	31, 56, 707
AgsI	TTSAA	5 cut(s)	56, 250, 479, 575, 611
AluBI	AGCT	2 cut(s)	419, 543
AluI	AGCT	2 cut(s)	419, 543
AlwNI	CAGNNNCTG	1 cut(s)	543
AoxI	GGCC	2 cut(s)	58, 369
ApeKI	GCWGC	2 cut(s)	416, 543
AseI	ATTAAT	1 cut(s)	497
AspA2I	CCTAGG	1 cut(s)	446
AspS9I	GGNCC	2 cut(s)	307, 710
AsuC2I	CCSGG	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	690
AvaII	GGWCC	2 cut(s)	307, 710
AvrII	CCTAGG	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	371
BbvI	GCAGC	2 cut(s)	428, 530
BccI	CCATC	1 cut(s)	455
BceAI	ACGGC	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	275
BfaI	CTAG	4 cut(s)	288, 390, 408, 447
BisI	GCNGC	3 cut(s)	25, 417, 544
BlnI	CCTAGG	1 cut(s)	446
BlsI	GCNGC	3 cut(s)	26, 418, 545
BmcAI	AGTACT	1 cut(s)	570
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	2 cut(s)	307, 710
BmgT120I	GGNCC	2 cut(s)	307, 710
BmiI	GGNNCC	2 cut(s)	42, 452
BmrFI	CCNGG	1 cut(s)	275
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	2 cut(s)	11, 339
BmuI	ACTGGG	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 56, 707
Bse1I	ACTGG	4 cut(s)	133, 628, 676, 712
BseDI	CCNNGG	1 cut(s)	446
BseLI	CCNNNNNNNGG	3 cut(s)	31, 56, 707
BseNI	ACTGG	4 cut(s)	133, 628, 676, 712
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	428, 530
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	2 cut(s)	60, 371
BsiSI	CCGG	1 cut(s)	274
BslI	CCNNNNNNNGG	3 cut(s)	31, 56, 707
BsnI	GGCC	2 cut(s)	60, 371
Bsp1286I	GDGCHC	1 cut(s)	89
BspACI	CCGC	3 cut(s)	25, 152, 508
BspANI	GGCC	2 cut(s)	60, 371
BspLI	GGNNCC	2 cut(s)	42, 452
BsrI	ACTGG	4 cut(s)	133, 628, 676, 712
BssECI	CCNNGG	1 cut(s)	446
BssT1I	CCWWGG	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	504
Bst6I	CTCTTC	2 cut(s)	357, 570
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	3 cut(s)	380, 420, 428
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	273
BstSLI	GKGCMC	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	428, 530
BstXI	CCANNNNNNTGG	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	60, 371
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	418, 683
Cac8I	GCNNGC	1 cut(s)	328
CaiI	CAGNNNCTG	1 cut(s)	543
Cfr13I	GGNCC	2 cut(s)	307, 710
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	3 cut(s)	352, 405, 569
CviJI	RGCY	8 cut(s)	60, 108, 233, 287, 371, 419, 451, 543
CviKI_1	RGCY	8 cut(s)	60, 108, 233, 287, 371, 419, 451, 543
CviQI	GTAC	3 cut(s)	352, 405, 569
DdeI	CTNAG	3 cut(s)	380, 420, 428
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	357, 570
EarI	CTCTTC	2 cut(s)	357, 570
Eco130I	CCWWGG	1 cut(s)	446
Eco32I	GATATC	1 cut(s)	240
Eco47I	GGWCC	2 cut(s)	307, 710
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	446
ErhI	CCWWGG	1 cut(s)	446
FalI	AAGNNNNNCTT	4 cut(s)	471, 503, 555, 587
FauI	CCCGC	1 cut(s)	159
FauNDI	CATATG	1 cut(s)	197
Fnu4HI	GCNGC	3 cut(s)	25, 417, 544
Fsp4HI	GCNGC	3 cut(s)	25, 417, 544
FspBI	CTAG	4 cut(s)	288, 390, 408, 447
GluI	GCNGC	3 cut(s)	25, 417, 544
HaeIII	GGCC	2 cut(s)	60, 371
HapII	CCGG	1 cut(s)	274
HgaI	GACGC	1 cut(s)	433
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HinfI	GANTC	2 cut(s)	278, 385
HpaII	CCGG	1 cut(s)	274
HphI	GGTGA	1 cut(s)	690
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188III	TCNNGA	1 cut(s)	479
Hpy8I	GTNNAC	1 cut(s)	673
HpyAV	CCTTC	2 cut(s)	104, 485
HpyCH4III	ACNGT	1 cut(s)	504
HpyCH4IV	ACGT	1 cut(s)	515
HpyCH4V	TGCA	5 cut(s)	261, 330, 359, 416, 546
HpyF3I	CTNAG	3 cut(s)	380, 420, 428
HpySE526I	ACGT	1 cut(s)	515
LmnI	GCTCC	1 cut(s)	456
LpnPI	CCDG	8 cut(s)	23, 68, 146, 228, 287, 609, 689, 693
Lsp1109I	GCAGC	2 cut(s)	428, 530
LweI	GCATC	2 cut(s)	11, 339
MaeI	CTAG	4 cut(s)	288, 390, 408, 447
MaeII	ACGT	1 cut(s)	515
MaeIII	GTNAC	2 cut(s)	431, 464
MboII	GAAGA	2 cut(s)	374, 587
MhlI	GDGCHC	1 cut(s)	89
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	3 cut(s)	373, 441, 586
MluNI	TGGCCA	1 cut(s)	371
MnlI	CCTC	5 cut(s)	54, 174, 298, 358, 446
Mox20I	TGGCCA	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	3 cut(s)	137, 497, 715
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	1 cut(s)	275
NciI	CCSGG	1 cut(s)	275
NdeI	CATATG	1 cut(s)	197
NlaIV	GGNNCC	2 cut(s)	42, 452
PfeI	GAWTC	2 cut(s)	278, 385
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	3 cut(s)	26, 418, 545
PshBI	ATTAAT	1 cut(s)	497
PsiI	TTATAA	1 cut(s)	600
PspN4I	GGNNCC	2 cut(s)	42, 452
PspPI	GGNCC	2 cut(s)	307, 710
PstNI	CAGNNNCTG	1 cut(s)	543
RsaI	GTAC	3 cut(s)	353, 406, 570
RsaNI	GTAC	3 cut(s)	352, 405, 569
SaqAI	TTAA	3 cut(s)	137, 497, 715
SatI	GCNGC	3 cut(s)	25, 417, 544
Sau96I	GGNCC	2 cut(s)	307, 710
ScaI	AGTACT	1 cut(s)	570
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	7 cut(s)	247, 369, 421, 438, 518, 545, 715
SfaNI	GCATC	2 cut(s)	11, 339
SinI	GGWCC	2 cut(s)	307, 710
Sse9I	AATT	3 cut(s)	373, 441, 586
SsiI	CCGC	3 cut(s)	25, 152, 508
SspMI	CTAG	4 cut(s)	288, 390, 408, 447
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	1 cut(s)	504
TaiI	ACGT	1 cut(s)	518
TaqI	TCGA	1 cut(s)	171
TasI	AATT	3 cut(s)	373, 441, 586
TatI	WGTACW	3 cut(s)	351, 404, 568
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	278, 385
Tru1I	TTAA	3 cut(s)	137, 497, 715
Tru9I	TTAA	3 cut(s)	137, 497, 715
TscAI	CASTG	2 cut(s)	418, 683
TseI	GCWGC	2 cut(s)	416, 543
TspDTI	ATGAA	4 cut(s)	86, 357, 542, 595
TspRI	CASTG	2 cut(s)	418, 683
VpaK11BI	GGWCC	2 cut(s)	307, 710
VspI	ATTAAT	1 cut(s)	497
XagI	CCTNNNNNAGG	1 cut(s)	54
XmaJI	CCTAGG	1 cut(s)	446
XspI	CTAG	4 cut(s)	288, 390, 408, 447
ZrmI	AGTACT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.