Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Forward (+)

75783434 .. 75793668

Gene Structure 10235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG441400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAATATCGACAAGAGAGATGCCGCAGAGTGGTGCTGGTTCCTCTGCCATTTCAAGGCCACATAACCCCAATGCTTTATCTGGGCACTATCCTTCATTCCAAAGGCTTTCACATCACAATCGCTCATACCCAGTTCAACTTTCCCAACCCGCTGAACTACCCTCATTTCGACTTCTTAAAGTTGTACGATGGCATATGTGAGCAAAATATATCAGCCCACAACTTTATAGCCGTGATATCAGGTTTCAACACCAACTGCAAAGGCCATCTCCGGGATTCGTTGGCTAGGATAATGGAGAAAGTGGATCAACACAATAAGATTGCTTGCATCATCTATGATGAATATATGTACTTTGCAGAAGAGGTGGCCAATTATCTAAGGATTCCTAGTATCATATTGTCTACTAGCAGTGCAGCAAAGACGCTAAGTTACCTTGCATATCCTAGGCTCCAAAACGATGGTTACATTCCCTGTCAAGATTCTATGATGTTGGAACTAGTACCAGGACTTGGACCACTCAGATTTAAGGACCTACCCTTCACATATTTCAGAAATTTGGATGACTTGCTACAACTGATAGCAAAAGCCCTTGATCGAAGGTCATCTTCAGCCATCATCTGGAACACCATGGATTGTCTCGAGAAATCAACATTGACAAAGATCCAGCAGGAATACCAACTTCCGTTGTTCTCTATCTGCCCTCTCAACAAAACTGTTCCGGCCATATCCATCAGCTTGTTGAAAGAGGACCAGAGTTGCATTCCATGGCTTGACAAACAATCACACAACTCTGTCATCTATATAAGCCTCGGAAGCGCAGCTTCCATGGACAATAAAGACCTAGTTGAAATGGCATGGGGTCTCTCCAACAGTGAGCAGCCTTTCTTGTGGGTGGTCCGAACGGACTCCACATCACTGCCAGAAGGTTTCCACGAAGCTGTTGGAGACAGGGGTTGCATAGTAAAATGGGCACCCCAAAAGCAAGTCTTGGCACACTGCAGTTGGAGGGTTTTGGAGTCACTGTGGTTGGAATTCAACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

348

Amino Acids

39.87

Weight (kDa)

6.3

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	78 - 335	1.2e-10	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	973
AccB7I	CCANNNNNTGG	2 cut(s)	512, 621
AccI	GTMKAC	1 cut(s)	404
AciI	CCGC	2 cut(s)	25, 152
AclWI	GGATC	2 cut(s)	315, 658
AcoI	YGGCCR	2 cut(s)	369, 723
AcsI	RAATTY	2 cut(s)	556, 1034
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	3 cut(s)	188, 353, 504
AfiI	CCNNNNNNNGG	5 cut(s)	31, 56, 274, 512, 621
AgsI	TTSAA	6 cut(s)	56, 139, 250, 745, 851, 1039
AhlI	ACTAGT	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	3 cut(s)	738, 824, 941
AluI	AGCT	3 cut(s)	738, 824, 941
Alw26I	GTCTC	3 cut(s)	644, 869, 942
AlwI	GGATC	2 cut(s)	315, 658
Ama87I	CYCGRG	1 cut(s)	641
AoxI	GGCC	4 cut(s)	58, 265, 369, 723
ApeKI	GCWGC	3 cut(s)	416, 821, 880
ApoI	RAATTY	2 cut(s)	556, 1034
AspA2I	CCTAGG	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	821
AspS9I	GGNCC	4 cut(s)	515, 532, 751, 898
AsuC2I	CCSGG	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	641
AvaII	GGWCC	4 cut(s)	515, 532, 751, 898
AvrII	CCTAGG	1 cut(s)	446
BaeGI	GKGCMC	2 cut(s)	89, 976
BalI	TGGCCA	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	973
BbvI	GCAGC	3 cut(s)	428, 833, 892
BccI	CCATC	5 cut(s)	185, 276, 455, 623, 740
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	507
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	3 cut(s)	644, 869, 942
BcuI	ACTAGT	1 cut(s)	499
BfaI	CTAG	6 cut(s)	288, 390, 408, 447, 500, 845
BfmI	CTRYAG	1 cut(s)	1000
BisI	GCNGC	4 cut(s)	25, 417, 822, 881
BlnI	CCTAGG	1 cut(s)	446
BlsI	GCNGC	4 cut(s)	26, 418, 823, 882
Bme1390I	CCNGG	2 cut(s)	275, 507
Bme18I	GGWCC	4 cut(s)	515, 532, 751, 898
BmeT110I	CYCGRG	1 cut(s)	641
BmgT120I	GGNCC	4 cut(s)	515, 532, 751, 898
BmiI	GGNNCC	3 cut(s)	42, 452, 975
BmrFI	CCNGG	2 cut(s)	275, 507
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	2 cut(s)	11, 339
BmuI	ACTGGG	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	869
BsaJI	CCNNGG	5 cut(s)	446, 630, 767, 811, 828
BsaXI	ACNNNNNCTCC	2 cut(s)	1010, 1040
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 56, 274, 512, 621
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	5 cut(s)	446, 630, 767, 811, 828
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	5 cut(s)	31, 56, 274, 512, 621
BseMII	CTCAG	1 cut(s)	535
BseNI	ACTGG	1 cut(s)	133
BseSI	GKGCMC	2 cut(s)	89, 976
BseXI	GCAGC	3 cut(s)	428, 833, 892
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	4 cut(s)	60, 267, 371, 725
BshNI	GGYRCC	1 cut(s)	973
BsiHKCI	CYCGRG	1 cut(s)	641
BsiSI	CCGG	2 cut(s)	274, 722
BslI	CCNNNNNNNGG	5 cut(s)	31, 56, 274, 512, 621
BsmAI	GTCTC	3 cut(s)	644, 869, 942
BsmI	GAATGC	1 cut(s)	762
BsnI	GGCC	4 cut(s)	60, 267, 371, 725
Bso31I	GGTCTC	1 cut(s)	869
BsoBI	CYCGRG	1 cut(s)	641
Bsp1286I	GDGCHC	2 cut(s)	89, 976
Bsp143I	GATC	3 cut(s)	307, 595, 663
Bsp19I	CCATGG	3 cut(s)	630, 767, 828
BspACI	CCGC	2 cut(s)	25, 152
BspANI	GGCC	4 cut(s)	60, 267, 371, 725
BspCNI	CTCAG	1 cut(s)	534
BspLI	GGNNCC	3 cut(s)	42, 452, 975
BspMAI	CTGCAG	1 cut(s)	1004
BspPI	GGATC	2 cut(s)	315, 658
BspT107I	GGYRCC	1 cut(s)	973
BspTNI	GGTCTC	1 cut(s)	869
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	5 cut(s)	446, 630, 767, 811, 828
BssMI	GATC	3 cut(s)	307, 595, 663
BssT1I	CCWWGG	4 cut(s)	446, 630, 767, 828
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	3 cut(s)	718, 875, 1026
Bst6I	CTCTTC	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	3 cut(s)	380, 428, 521
BstDSI	CCRYGG	3 cut(s)	630, 767, 828
BstF5I	GGATG	1 cut(s)	568
BstHHI	GCGC	1 cut(s)	821
BstKTI	GATC	3 cut(s)	310, 598, 666
BstMAI	GTCTC	3 cut(s)	644, 869, 942
BstMBI	GATC	3 cut(s)	307, 595, 663
BstMWI	GCNNNNNNNGC	1 cut(s)	816
BstNI	CCWGG	1 cut(s)	507
BstSCI	CCNGG	2 cut(s)	273, 505
BstSFI	CTRYAG	1 cut(s)	1000
BstSLI	GKGCMC	2 cut(s)	89, 976
BstV1I	GCAGC	3 cut(s)	428, 833, 892
BstX2I	RGATCY	1 cut(s)	663
BstXI	CCANNNNNNTGG	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	663
BsuRI	GGCC	4 cut(s)	60, 267, 371, 725
BtgI	CCRYGG	3 cut(s)	630, 767, 828
BtsCI	GGATG	1 cut(s)	568
BtsI	GCAGTG	3 cut(s)	418, 917, 997
BtsIMutI	CAGTG	5 cut(s)	418, 880, 917, 997, 1022
Cac8I	GCNNGC	1 cut(s)	328
CfoI	GCGC	1 cut(s)	821
Cfr13I	GGNCC	4 cut(s)	515, 532, 751, 898
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	3 cut(s)	187, 352, 503
CviAII	CATG	4 cut(s)	631, 768, 829, 858
CviQI	GTAC	3 cut(s)	187, 352, 503
DdeI	CTNAG	3 cut(s)	380, 428, 521
DpnI	GATC	3 cut(s)	309, 597, 665
DpnII	GATC	3 cut(s)	307, 595, 663
EaeI	YGGCCR	2 cut(s)	369, 723
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	4 cut(s)	446, 630, 767, 828
Eco31I	GGTCTC	1 cut(s)	869
Eco32I	GATATC	1 cut(s)	240
Eco47I	GGWCC	4 cut(s)	515, 532, 751, 898
Eco57I	CTGAAG	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	641
EcoO109I	RGGNCCY	1 cut(s)	532
EcoRI	GAATTC	1 cut(s)	1034
EcoRII	CCWGG	1 cut(s)	505
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	4 cut(s)	446, 630, 767, 828
ErhI	CCWWGG	4 cut(s)	446, 630, 767, 828
FaeI	CATG	4 cut(s)	634, 771, 832, 861
FalI	AAGNNNNNCTT	6 cut(s)	592, 624, 808, 840, 974, 1006
FatI	CATG	4 cut(s)	630, 767, 828, 857
FauI	CCCGC	1 cut(s)	159
FauNDI	CATATG	1 cut(s)	197
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	4 cut(s)	25, 417, 822, 881
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	4 cut(s)	25, 417, 822, 881
FspBI	CTAG	6 cut(s)	288, 390, 408, 447, 500, 845
GlaI	GCGC	1 cut(s)	820
GluI	GCNGC	4 cut(s)	25, 417, 822, 881
HaeIII	GGCC	4 cut(s)	60, 267, 371, 725
HapII	CCGG	2 cut(s)	274, 722
HgaI	GACGC	1 cut(s)	433
HhaI	GCGC	1 cut(s)	821
Hin1II	CATG	4 cut(s)	634, 771, 832, 861
Hin6I	GCGC	1 cut(s)	819
HinP1I	GCGC	1 cut(s)	819
HinfI	GANTC	5 cut(s)	278, 385, 482, 908, 1019
HpaII	CCGG	2 cut(s)	274, 722
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188I	TCNGA	4 cut(s)	524, 554, 815, 902
Hpy188III	TCNNGA	4 cut(s)	479, 622, 641, 643
Hpy8I	GTNNAC	1 cut(s)	405
HpyAV	CCTTC	4 cut(s)	104, 550, 594, 920
HpyCH4III	ACNGT	3 cut(s)	718, 875, 1026
HpyCH4V	TGCA	8 cut(s)	261, 330, 359, 416, 440, 762, 960, 1002
HpyF10VI	GCNNNNNNNGC	1 cut(s)	816
HpyF3I	CTNAG	3 cut(s)	380, 428, 521
Hsp92II	CATG	4 cut(s)	634, 771, 832, 861
HspAI	GCGC	1 cut(s)	819
Kzo9I	GATC	3 cut(s)	307, 595, 663
LmnI	GCTCC	1 cut(s)	456
Lsp1109I	GCAGC	3 cut(s)	428, 833, 892
LweI	GCATC	2 cut(s)	11, 339
MaeI	CTAG	6 cut(s)	288, 390, 408, 447, 500, 845
MaeIII	GTNAC	3 cut(s)	431, 464, 1020
MalI	GATC	3 cut(s)	309, 597, 665
MboI	GATC	3 cut(s)	307, 595, 663
MboII	GAAGA	2 cut(s)	374, 600
MflI	RGATCY	1 cut(s)	663
MhlI	GDGCHC	2 cut(s)	89, 976
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	3 cut(s)	373, 556, 1034
MluNI	TGGCCA	1 cut(s)	371
MlyI	GAGTC	2 cut(s)	902, 1028
MmeI	TCCRAC	5 cut(s)	474, 894, 925, 986, 1011
MnlI	CCTC	7 cut(s)	54, 174, 358, 714, 742, 821, 1002
Mox20I	TGGCCA	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	2 cut(s)	179, 528
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	2 cut(s)	274, 722
MspR9I	CCNGG	2 cut(s)	275, 507
Mva1269I	GAATGC	1 cut(s)	762
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	1 cut(s)	816
NciI	CCSGG	1 cut(s)	275
NcoI	CCATGG	3 cut(s)	630, 767, 828
NdeI	CATATG	1 cut(s)	197
NdeII	GATC	3 cut(s)	307, 595, 663
NlaIII	CATG	4 cut(s)	634, 771, 832, 861
NlaIV	GGNNCC	3 cut(s)	42, 452, 975
NmuCI	GTSAC	1 cut(s)	1020
PaeR7I	CTCGAG	1 cut(s)	641
PctI	GAATGC	1 cut(s)	762
PfeI	GAWTC	3 cut(s)	278, 385, 482
PflMI	CCANNNNNTGG	2 cut(s)	512, 621
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	4 cut(s)	26, 418, 823, 882
PleI	GAGTC	2 cut(s)	902, 1027
PpsI	GAGTC	2 cut(s)	902, 1027
PpuMI	RGGWCCY	1 cut(s)	532
Psp5II	RGGWCCY	1 cut(s)	532
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	3 cut(s)	42, 452, 975
PspPI	GGNCC	4 cut(s)	515, 532, 751, 898
PspPPI	RGGWCCY	1 cut(s)	532
PstI	CTGCAG	1 cut(s)	1004
PsuI	RGATCY	1 cut(s)	663
RsaI	GTAC	3 cut(s)	188, 353, 504
RsaNI	GTAC	3 cut(s)	187, 352, 503
SaqAI	TTAA	2 cut(s)	179, 528
SatI	GCNGC	4 cut(s)	25, 417, 822, 881
Sau3AI	GATC	3 cut(s)	307, 595, 663
Sau96I	GGNCC	4 cut(s)	515, 532, 751, 898
SchI	GAGTC	2 cut(s)	902, 1028
ScrFI	CCNGG	2 cut(s)	275, 507
SduI	GDGCHC	2 cut(s)	89, 976
SfaNI	GCATC	2 cut(s)	11, 339
SfcI	CTRYAG	1 cut(s)	1000
Sfr274I	CTCGAG	1 cut(s)	641
SinI	GGWCC	4 cut(s)	515, 532, 751, 898
SlaI	CTCGAG	1 cut(s)	641
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
SpeI	ACTAGT	1 cut(s)	499
Sse9I	AATT	3 cut(s)	373, 556, 1034
SsiI	CCGC	2 cut(s)	25, 152
SspMI	CTAG	6 cut(s)	288, 390, 408, 447, 500, 845
StyD4I	CCNGG	2 cut(s)	273, 505
StyI	CCWWGG	4 cut(s)	446, 630, 767, 828
TaaI	ACNGT	3 cut(s)	718, 875, 1026
TaqI	TCGA	4 cut(s)	10, 171, 598, 642
TasI	AATT	3 cut(s)	373, 556, 1034
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	3 cut(s)	278, 385, 482
Tru1I	TTAA	2 cut(s)	179, 528
Tru9I	TTAA	2 cut(s)	179, 528
TscAI	CASTG	5 cut(s)	418, 880, 924, 1004, 1029
TseFI	GTSAC	1 cut(s)	1020
TseI	GCWGC	3 cut(s)	416, 821, 880
Tsp45I	GTSAC	1 cut(s)	1020
TspDTI	ATGAA	2 cut(s)	86, 357
TspGWI	ACGGA	2 cut(s)	675, 920
TspRI	CASTG	5 cut(s)	418, 880, 924, 1004, 1029
Van91I	CCANNNNNTGG	2 cut(s)	512, 621
VpaK11BI	GGWCC	4 cut(s)	515, 532, 751, 898
XapI	RAATTY	2 cut(s)	556, 1034
XcmI	CCANNNNNNNNNTGG	1 cut(s)	941
XhoI	CTCGAG	1 cut(s)	641
XmaJI	CCTAGG	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	404
XspI	CTAG	6 cut(s)	288, 390, 408, 447, 500, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.