Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006583.1

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Reverse (-)

65990 .. 67489

Gene Structure 1500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006583.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

atggagatgcaaaagagaaccccgagaggtcagagattggtcctagttccaactccataccaaggccacataaacccaatgcttcagttgggtacgtttcttcactcaaagggattttccattaccatcgttcacacccatttcaactctccaagcccttccaaccaccctgagttcacattcattccgattcaagacggcctaactgttcctctagtctcatccgggaatataatagctattctgttggctctcaatgccaattgcaaatcgagtttcgaacaatgtttaactactcaagtaatgaaacaagaaccggagaagaagatcacctgcatcatctacgatgaattcatgtacttctctgaagctgctgctaattatctgaatattccaagcatcatcctccgtactaccagtgcagccaactttcatgctcgatctaccgtcgtagaactttattcaaaaggccacattcccttcccagagccggtgccccaacttcatcccctcagattcaaggatctgcccatctcaccctgggacacgttagaaaacttcttaaaactagtagttaagtcacatgatgttgggagatcttcggccataatttgtaataccatagactgccttgaccaatcatcactagcacggatccaaaaacattgccaagtaccgatcttctgcataggccctcttcacaaaatcacaacagcggcctctagtagtttacttgaagaggactcaagctgcattgagtggcttgacaagcaatctcacaagtcagttatctatgtcagtttggggagtatagcatccattggtgagaaagaactggcagaaatggcttggggattagccaacagccagcaaccttttttgtgggtgatcagacctggctccattaccggctccgattggatcgagctattgcctcaagagtttagagaagctattggagaaagtggtttcatagtgaaatgggcaccccaaagggaagttttggctcatggtgctgtgggcgcgttttggacccattgtggctggaattcaactcttgaaagcatatctgaaggggttccgatgatttgcaaaccatgttttagtgatcagaaggtgcatgcgaggtatgttagcaaagtatggagactaggtttagaattggaggatgagtttgagagaggagagatagagagagctgttaggaaactcatggtaaatagtgatggggaagaaataagggcgagggccaaggatatgaaagagaaaatacaagtttctatgagcaagggtggatctaactacaaaagaaagagcgaacttgttgaattcattatggcattctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

448

Amino Acids

50.29

Weight (kDa)

6.58

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	341
AccB1I	GGYRCC	2 cut(s)	493, 985
AccII	CGCG	1 cut(s)	1025
AciI	CCGC	1 cut(s)	716
AclWI	GGATC	5 cut(s)	531, 649, 662, 929, 1303
AcoI	YGGCCR	1 cut(s)	603
AcsI	RAATTY	3 cut(s)	350, 1048, 1328
AcuI	CTGAAG	3 cut(s)	68, 387, 1092
AfaI	GTAC	4 cut(s)	94, 359, 412, 675
AfiI	CCNNNNNNNGG	2 cut(s)	62, 490
AflIII	ACRYGT	1 cut(s)	546
AgsI	TTSAA	8 cut(s)	145, 194, 465, 520, 737, 1053, 1061, 1328
AhlI	ACTAGT	1 cut(s)	568
AjnI	CCWGG	2 cut(s)	539, 895
AluBI	AGCT	6 cut(s)	239, 371, 750, 928, 953, 1199
AluI	AGCT	6 cut(s)	239, 371, 750, 928, 953, 1199
Alw26I	GTCTC	2 cut(s)	223, 1141
AlwI	GGATC	5 cut(s)	531, 649, 662, 929, 1303
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	7 cut(s)	64, 199, 469, 603, 691, 717, 1248
ApeKI	GCWGC	4 cut(s)	371, 374, 422, 750
ApoI	RAATTY	3 cut(s)	350, 1048, 1328
Asp700I	GAANNNNTTC	1 cut(s)	1077
AspLEI	GCGC	1 cut(s)	1025
AspS9I	GGNCC	4 cut(s)	40, 692, 1032, 1248
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	4 cut(s)	322, 528, 836, 898
AsuII	TTCGAA	1 cut(s)	279
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	2 cut(s)	40, 1032
BaeGI	GKGCMC	2 cut(s)	498, 988
BamHI	GGATCC	1 cut(s)	654
BanI	GGYRCC	2 cut(s)	493, 985
BbvI	GCAGC	4 cut(s)	358, 361, 434, 737
BccI	CCATC	3 cut(s)	134, 539, 1220
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	2 cut(s)	541, 897
BclI	TGATCA	2 cut(s)	888, 1108
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	223, 1141
BcuI	ACTAGT	1 cut(s)	568
BfaI	CTAG	6 cut(s)	44, 215, 569, 647, 723, 1151
BfuAI	ACCTGC	1 cut(s)	341
BglII	AGATCT	1 cut(s)	596
BisI	GCNGC	5 cut(s)	372, 375, 423, 717, 751
BlsI	GCNGC	5 cut(s)	373, 376, 424, 718, 752
Bme1390I	CCNGG	3 cut(s)	226, 541, 897
Bme18I	GGWCC	2 cut(s)	40, 1032
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	4 cut(s)	40, 692, 1032, 1248
BmiI	GGNNCC	7 cut(s)	495, 656, 901, 913, 987, 1034, 1080
BmrFI	CCNGG	3 cut(s)	226, 541, 897
BmsI	GCATC	3 cut(s)	345, 408, 824
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	3 cut(s)	282, 730, 921
BpuMI	CCSGG	1 cut(s)	226
BsaJI	CCNNGG	4 cut(s)	61, 539, 540, 1251
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	4 cut(s)	1138, 1157, 1168, 1187
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 490
Bse118I	RCCGGY	2 cut(s)	490, 908
Bse1I	ACTGG	2 cut(s)	417, 840
Bse3DI	GCAATG	1 cut(s)	664
BseBI	CCWGG	2 cut(s)	541, 897
BseDI	CCNNGG	4 cut(s)	61, 539, 540, 1251
BseGI	GGATG	5 cut(s)	221, 402, 505, 815, 1174
BseLI	CCNNNNNNNGG	2 cut(s)	62, 490
BseMI	GCAATG	1 cut(s)	664
BseMII	CTCAG	2 cut(s)	162, 526
BseNI	ACTGG	2 cut(s)	417, 840
BseRI	GAGGAG	1 cut(s)	1197
BseSI	GKGCMC	2 cut(s)	498, 988
BseXI	GCAGC	4 cut(s)	358, 361, 434, 737
BsgI	GTGCAG	1 cut(s)	441
Bsh1236I	CGCG	1 cut(s)	1025
BshFI	GGCC	7 cut(s)	66, 201, 471, 605, 693, 719, 1250
BshNI	GGYRCC	2 cut(s)	493, 985
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	4 cut(s)	225, 317, 491, 909
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	2 cut(s)	62, 490
BsmAI	GTCTC	2 cut(s)	223, 1141
BsmFI	GGGAC	1 cut(s)	557
BsmI	GAATGC	1 cut(s)	1340
BsnI	GGCC	7 cut(s)	66, 201, 471, 605, 693, 719, 1250
BsoBI	CYCGRG	1 cut(s)	22
Bsp119I	TTCGAA	1 cut(s)	279
Bsp1286I	GDGCHC	2 cut(s)	498, 988
BspACI	CCGC	1 cut(s)	716
BspANI	GGCC	7 cut(s)	66, 201, 471, 605, 693, 719, 1250
BspCNI	CTCAG	2 cut(s)	163, 525
BspFNI	CGCG	1 cut(s)	1025
BspLI	GGNNCC	7 cut(s)	495, 656, 901, 913, 987, 1034, 1080
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	5 cut(s)	531, 649, 662, 929, 1303
BspT104I	TTCGAA	1 cut(s)	279
BspT107I	GGYRCC	2 cut(s)	493, 985
BsrDI	GCAATG	1 cut(s)	664
BsrFI	RCCGGY	2 cut(s)	490, 908
BsrI	ACTGG	2 cut(s)	417, 840
BssAI	RCCGGY	2 cut(s)	490, 908
BssECI	CCNNGG	4 cut(s)	61, 539, 540, 1251
BssT1I	CCWWGG	2 cut(s)	61, 1251
Bst2UI	CCWGG	2 cut(s)	541, 897
Bst4CI	ACNGT	2 cut(s)	208, 448
Bst6I	CTCTTC	2 cut(s)	702, 732
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	869, 1122
BstDEI	CTNAG	2 cut(s)	171, 512
BstF5I	GGATG	5 cut(s)	221, 402, 505, 815, 1174
BstFNI	CGCG	1 cut(s)	1025
BstHHI	GCGC	1 cut(s)	1025
BstMAI	GTCTC	2 cut(s)	223, 1141
BstMWI	GCNNNNNNNGC	5 cut(s)	257, 769, 845, 1013, 1022
BstNI	CCWGG	2 cut(s)	541, 897
BstNSI	RCATGY	1 cut(s)	1124
BstSCI	CCNGG	3 cut(s)	224, 539, 895
BstSLI	GKGCMC	2 cut(s)	498, 988
BstUI	CGCG	1 cut(s)	1025
BstV1I	GCAGC	4 cut(s)	358, 361, 434, 737
BstX2I	RGATCY	4 cut(s)	523, 596, 654, 1295
BstYI	RGATCY	4 cut(s)	523, 596, 654, 1295
BsuRI	GGCC	7 cut(s)	66, 201, 471, 605, 693, 719, 1250
BtsCI	GGATG	5 cut(s)	221, 402, 505, 815, 1174
BtsIMutI	CAGTG	1 cut(s)	424
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	2 cut(s)	869, 1122
CfoI	GCGC	1 cut(s)	1025
Cfr10I	RCCGGY	2 cut(s)	490, 908
Cfr13I	GGNCC	4 cut(s)	40, 692, 1032, 1248
Csp6I	GTAC	4 cut(s)	93, 358, 411, 674
CviAII	CATG	7 cut(s)	355, 434, 584, 1010, 1098, 1121, 1213
CviQI	GTAC	4 cut(s)	93, 358, 411, 674
DdeI	CTNAG	2 cut(s)	171, 512
EaeI	YGGCCR	1 cut(s)	603
Eam1104I	CTCTTC	2 cut(s)	702, 732
EarI	CTCTTC	2 cut(s)	702, 732
Eco130I	CCWWGG	2 cut(s)	61, 1251
Eco47I	GGWCC	2 cut(s)	40, 1032
Eco57I	CTGAAG	3 cut(s)	68, 387, 1092
Eco88I	CYCGRG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	692
EcoRI	GAATTC	3 cut(s)	350, 1048, 1328
EcoRII	CCWGG	2 cut(s)	539, 895
EcoT14I	CCWWGG	2 cut(s)	61, 1251
ErhI	CCWWGG	2 cut(s)	61, 1251
FaeI	CATG	7 cut(s)	358, 437, 587, 1013, 1101, 1124, 1216
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	7 cut(s)	354, 433, 583, 1009, 1097, 1120, 1212
FbaI	TGATCA	2 cut(s)	888, 1108
Fnu4HI	GCNGC	5 cut(s)	372, 375, 423, 717, 751
FokI	GGATG	5 cut(s)	208, 389, 492, 802, 1181
Fsp4HI	GCNGC	5 cut(s)	372, 375, 423, 717, 751
FspBI	CTAG	6 cut(s)	44, 215, 569, 647, 723, 1151
GlaI	GCGC	1 cut(s)	1024
GluI	GCNGC	5 cut(s)	372, 375, 423, 717, 751
HaeIII	GGCC	7 cut(s)	66, 201, 471, 605, 693, 719, 1250
HapII	CCGG	4 cut(s)	225, 317, 491, 909
HhaI	GCGC	1 cut(s)	1025
Hin1II	CATG	7 cut(s)	358, 437, 587, 1013, 1101, 1124, 1216
Hin6I	GCGC	1 cut(s)	1023
HinP1I	GCGC	1 cut(s)	1023
HinfI	GANTC	3 cut(s)	190, 516, 743
HpaII	CCGG	4 cut(s)	225, 317, 491, 909
HphI	GGTGA	4 cut(s)	322, 528, 836, 898
Hpy166II	GTNNAC	3 cut(s)	133, 177, 731
Hpy188III	TCNNGA	3 cut(s)	194, 938, 1058
Hpy8I	GTNNAC	3 cut(s)	133, 177, 731
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	4 cut(s)	168, 490, 1067, 1108
HpyCH4III	ACNGT	2 cut(s)	208, 448
HpyCH4IV	ACGT	2 cut(s)	95, 548
HpyCH4V	TGCA	8 cut(s)	10, 267, 336, 422, 687, 753, 1092, 1120
HpyF10VI	GCNNNNNNNGC	5 cut(s)	257, 769, 845, 1013, 1022
HpyF3I	CTNAG	2 cut(s)	171, 512
HpySE526I	ACGT	2 cut(s)	95, 548
Hsp92II	CATG	7 cut(s)	358, 437, 587, 1013, 1101, 1124, 1216
HspAI	GCGC	1 cut(s)	1023
Ksp22I	TGATCA	2 cut(s)	888, 1108
LmnI	GCTCC	2 cut(s)	905, 917
Lsp1109I	GCAGC	4 cut(s)	358, 361, 434, 737
LweI	GCATC	3 cut(s)	345, 408, 824
MaeI	CTAG	6 cut(s)	44, 215, 569, 647, 723, 1151
MaeII	ACGT	2 cut(s)	95, 548
MaeIII	GTNAC	1 cut(s)	579
MboII	GAAGA	8 cut(s)	92, 334, 337, 591, 673, 689, 749, 1244
MfeI	CAATTG	1 cut(s)	262
MflI	RGATCY	4 cut(s)	523, 596, 654, 1295
MhlI	GDGCHC	2 cut(s)	498, 988
MluCI	AATT	7 cut(s)	262, 350, 379, 609, 1048, 1160, 1328
MlyI	GAGTC	1 cut(s)	737
MmeI	TCCRAC	2 cut(s)	74, 186
MroXI	GAANNNNTTC	1 cut(s)	1077
MseI	TTAA	3 cut(s)	290, 563, 576
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	4 cut(s)	225, 317, 491, 909
MspR9I	CCNGG	3 cut(s)	226, 541, 897
MunI	CAATTG	1 cut(s)	262
Mva1269I	GAATGC	1 cut(s)	1340
MvaI	CCWGG	2 cut(s)	541, 897
MvnI	CGCG	1 cut(s)	1025
MwoI	GCNNNNNNNGC	5 cut(s)	257, 769, 845, 1013, 1022
NciI	CCSGG	1 cut(s)	226
NlaIII	CATG	7 cut(s)	358, 437, 587, 1013, 1101, 1124, 1216
NlaIV	GGNNCC	7 cut(s)	495, 656, 901, 913, 987, 1034, 1080
NmuCI	GTSAC	1 cut(s)	579
NspI	RCATGY	1 cut(s)	1124
NspV	TTCGAA	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	1124
PaqCI	CACCTGC	1 cut(s)	341
PasI	CCCWGGG	1 cut(s)	540
PctI	GAATGC	1 cut(s)	1340
PdmI	GAANNNNTTC	1 cut(s)	1077
PfeI	GAWTC	2 cut(s)	190, 516
PfoI	TCCNGGA	1 cut(s)	224
PkrI	GCNGC	5 cut(s)	373, 376, 424, 718, 752
PleI	GAGTC	1 cut(s)	737
PpsI	GAGTC	1 cut(s)	737
Psp6I	CCWGG	2 cut(s)	539, 895
PspGI	CCWGG	2 cut(s)	539, 895
PspN4I	GGNNCC	7 cut(s)	495, 656, 901, 913, 987, 1034, 1080
PspPI	GGNCC	4 cut(s)	40, 692, 1032, 1248
PsuI	RGATCY	4 cut(s)	523, 596, 654, 1295
RsaI	GTAC	4 cut(s)	94, 359, 412, 675
RsaNI	GTAC	4 cut(s)	93, 358, 411, 674
SaqAI	TTAA	3 cut(s)	290, 563, 576
SatI	GCNGC	5 cut(s)	372, 375, 423, 717, 751
Sau96I	GGNCC	4 cut(s)	40, 692, 1032, 1248
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	3 cut(s)	226, 541, 897
SduI	GDGCHC	2 cut(s)	498, 988
SfaNI	GCATC	3 cut(s)	345, 408, 824
SfuI	TTCGAA	1 cut(s)	279
SinI	GGWCC	2 cut(s)	40, 1032
SmlI	CTYRAG	3 cut(s)	297, 745, 936
SmoI	CTYRAG	3 cut(s)	297, 745, 936
SpeI	ACTAGT	1 cut(s)	568
SphI	GCATGC	1 cut(s)	1124
Sse9I	AATT	7 cut(s)	262, 350, 379, 609, 1048, 1160, 1328
SsiI	CCGC	1 cut(s)	716
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	6 cut(s)	44, 215, 569, 647, 723, 1151
StyD4I	CCNGG	3 cut(s)	224, 539, 895
StyI	CCWWGG	2 cut(s)	61, 1251
TaaI	ACNGT	2 cut(s)	208, 448
TaiI	ACGT	2 cut(s)	98, 551
TaqI	TCGA	4 cut(s)	272, 279, 439, 924
TasI	AATT	7 cut(s)	262, 350, 379, 609, 1048, 1160, 1328
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	1 cut(s)	719
TfiI	GAWTC	2 cut(s)	190, 516
Tru1I	TTAA	3 cut(s)	290, 563, 576
Tru9I	TTAA	3 cut(s)	290, 563, 576
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	1 cut(s)	579
TseI	GCWGC	4 cut(s)	371, 374, 422, 750
Tsp45I	GTSAC	1 cut(s)	579
TspDTI	ATGAA	9 cut(s)	172, 320, 343, 363, 422, 494, 961, 1274, 1321
TspGWI	ACGGA	2 cut(s)	398, 667
TspRI	CASTG	1 cut(s)	424
VpaK11BI	GGWCC	2 cut(s)	40, 1032
XapI	RAATTY	3 cut(s)	350, 1048, 1328
XceI	RCATGY	1 cut(s)	1124
XmnI	GAANNNNTTC	1 cut(s)	1077
XspI	CTAG	6 cut(s)	44, 215, 569, 647, 723, 1151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.