AT5G38040

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000714
Physical Location & Seq
Forward (+)
15184947 .. 15186854
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38040.1

Sequence Viewer

Length: 1350 bp
ATGGAGGAGAAGCTCTCGAGGAGAAGAAGAGTAGTGTTGGTTCCAGTTCCAGCTCAAGGACATATAACTCCAATGATACAACTTGCAAAAGCACTTCACTCAAAAGGCTTCTCTATTACAGTTGTTCAAACCAAGTTCAACTACTTAAACCCTTCAAATGATTTGTCTGATTTTCAGTTTGTAACCATCCCAGAGAACTTACCAGTGTCTGATCTTAAGAATCTAGGACCAGGACGGTTTCTGATTAAGCTAGCTAATGAGTGTTATGTTAGCTTTAAGGATTTGTTAGGTCAGTTGTTGGTTAATGAAGAAGAAGAGATCGCTTGTGTTATCTACGACGAGTTCATGTACTTTGTTGAAGTAGCAGTTAAAGAGTTTAAGCTTCGTAATGTTATTTTAAGTACTACAAGTGCAACGGCTTTTGTTTGTCGCTTTGTTATGTGTGAACTCTATGCTAAAGATGGTTTGGCTCAACTTAAAGAAGGCGGTGAGCGAGAAGTGGAGTTAGTACCGGAGTTGTATCCTATACGGTACAAAGATTTACCAAGTTCGGTATTTGCATCTGTAGAATCTTCAGTGGAGTTGTTTAAGAATACATGTTATAAAGGGACAGCTTCCTCTGTGATAATCAACACAGTGAGGTGTCTAGAGATGTCATCTTTGGAGTGGCTTCAACAAGAACTTGAAATCCCGGTGTATTCTATAGGCCCGCTTCATATGGTGGTGTCAGCTCCTCCTACGAGTCTTTTAGAAGAGAACGAGAGCTGTATAGAATGGTTGAACAAACAAAAGCCGAGCTCGGTGATATACATAAGCTTGGGAAGTTTTACTTTGATGGAAACTAAAGAAATGTTGGAGATGGCTTATGGGTTTGTTAGTAGTAACCAACACTTCTTGTGGGTGATTCGACCGGGATCTATATGTGGTTCTGAAATCTCTGAGGAAGAGTTGTTGAAGAAGATGGTAATTACGGATCGAGGTTACATTGTGAAATGGGCGCCGCAAAAACAAGTGCTTGCACATTCTGCGGTTGGAGCGTTCTGGAGTCATTGTGGATGGAACTCGACTTTAGAAAGTCTTGGTGAAGGAGTTCCATTGATATGTAGGCCTTTTACTACTGATCAAAAGGGGAATGCAAGGTACTTGGAGTGTGTGTGGAAAGTAGGAATTCAAGTGGAGGGTGAGCTAGAGAGAGGCGCAATCGAGAGAGCTGTGAAGAGGTTAATGGTGGATGAAGAAGGAGAAGAGATGAAGAGAAGAGCTCTAAGTTTAAAAGAGAAACTCAAAGCCTCTGTTTTAGCTCAAGGTTCTTCACATAAATCACTAGATGACTTCATCAAGACTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002239 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008194 GO:0009308 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009628 GO:0009690 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009894 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010118 GO:0010150 GO:0010154 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0022414 GO:0023052 GO:0031537 GO:0031668 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0034754 GO:0035251 GO:0042221 GO:0042445 GO:0042631 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046527 GO:0047254 GO:0047807 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050139 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0052640 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071462 GO:0071495 GO:0071496 GO:0071704 GO:0080043 GO:0080044 GO:0080062 GO:0080090 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:0104004 GO:1900000 GO:1901527 GO:1901564 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204
Pfam Domains
Protein Families
UDPGT

Protein Analysis

449

Amino Acids

50.62

Weight (kDa)

5.53

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 265 - 413 4.1e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 603
AccB1I GGYRCC 1 cut(s) 997
AciI CCGC 4 cut(s) 486, 710, 1001, 1028
AclWI GGATC 2 cut(s) 922, 981
AcsI RAATTY 1 cut(s) 1167
AcuI CTGAAG 1 cut(s) 558
AcyI GRCGYC 1 cut(s) 998
AfaI GTAC 5 cut(s) 350, 403, 510, 533, 1142
AfiI CCNNNNNNNGG 1 cut(s) 56
AflII CTTAAG 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 596
AgsI TTSAA 9 cut(s) 128, 139, 156, 359, 674, 686, 781, 955, 1172
AjnI CCWGG 1 cut(s) 229
AloI GAACNNNNNNTCC 2 cut(s) 672, 704
Alw21I GWGCWC 2 cut(s) 800, 1264
AlwI GGATC 2 cut(s) 922, 981
AlwNI CAGNNNCTG 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 16
AoxI GGCC 2 cut(s) 706, 1106
ApoI RAATTY 1 cut(s) 1167
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
Asp700I GAANNNNTTC 1 cut(s) 1089
AspLEI GCGC 2 cut(s) 1000, 1199
AspS9I GGNCC 2 cut(s) 227, 707
AsuC2I CCSGG 2 cut(s) 692, 912
AsuHPI GGTGA 5 cut(s) 500, 814, 913, 1094, 1193
AsuNHI GCTAGC 1 cut(s) 250
AvaI CYCGRG 1 cut(s) 16
AvaII GGWCC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 997
BanII GRGCYC 2 cut(s) 800, 1264
Bbv12I GWGCWC 2 cut(s) 800, 1264
BccI CCATC 6 cut(s) 194, 455, 829, 853, 955, 1050
BceAI ACGGC 1 cut(s) 432
BciT130I CCWGG 1 cut(s) 231
BciVI GTATCC 1 cut(s) 531
BclI TGATCA 1 cut(s) 1120
BcnI CCSGG 2 cut(s) 692, 912
BfaI CTAG 5 cut(s) 224, 251, 647, 1187, 1325
BfmI CTRYAG 2 cut(s) 564, 702
BfoI RGCGCY 1 cut(s) 1001
BfrI CTTAAG 1 cut(s) 215
BfuI GTATCC 1 cut(s) 531
BisI GCNGC 1 cut(s) 1001
BlsI GCNGC 1 cut(s) 1002
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 3 cut(s) 231, 692, 912
Bme18I GGWCC 1 cut(s) 227
BmeT110I CYCGRG 1 cut(s) 16
BmgT120I GGNCC 2 cut(s) 227, 707
BmiI GGNNCC 2 cut(s) 42, 999
BmrFI CCNGG 3 cut(s) 231, 692, 912
BmsI GCATC 1 cut(s) 569
BmtI GCTAGC 1 cut(s) 254
BplI GAGNNNNNCTC 3 cut(s) 31, 1246, 1278
BpmI CTGGAG 1 cut(s) 1063
BpuEI CTTGAG 2 cut(s) 39, 1287
BpuMI CCSGG 2 cut(s) 692, 912
BsaHI GRCGYC 1 cut(s) 998
BsaWI WCCGGW 1 cut(s) 511
BsaXI ACNNNNNCTCC 4 cut(s) 1036, 1066, 1139, 1169
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 44, 203
BseBI CCWGG 1 cut(s) 231
BseGI GGATG 3 cut(s) 186, 1061, 1237
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 930
BseNI ACTGG 2 cut(s) 44, 203
BseRI GAGGAG 3 cut(s) 20, 34, 723
Bsh1285I CGRYCG 1 cut(s) 911
BshFI GGCC 2 cut(s) 708, 1108
BshNI GGYRCC 1 cut(s) 997
BsiEI CGRYCG 1 cut(s) 911
BsiHKAI GWGCWC 2 cut(s) 800, 1264
BsiHKCI CYCGRG 1 cut(s) 16
BsiSI CCGG 3 cut(s) 512, 692, 911
BslFI GGGAC 1 cut(s) 622
BslI CCNNNNNNNGG 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 622
BsmI GAATGC 1 cut(s) 1138
BsnI GGCC 2 cut(s) 708, 1108
BsoBI CYCGRG 1 cut(s) 16
Bsp1286I GDGCHC 2 cut(s) 800, 1264
Bsp143I GATC 5 cut(s) 211, 318, 914, 973, 1120
BspACI CCGC 4 cut(s) 486, 710, 1001, 1028
BspANI GGCC 2 cut(s) 708, 1108
BspCNI CTCAG 1 cut(s) 931
BspLI GGNNCC 2 cut(s) 42, 999
BspOI GCTAGC 1 cut(s) 254
BspPI GGATC 2 cut(s) 922, 981
BspQI GCTCTTC 1 cut(s) 1252
BspT107I GGYRCC 1 cut(s) 997
BspTI CTTAAG 1 cut(s) 215
BsrI ACTGG 2 cut(s) 44, 203
BssMI GATC 5 cut(s) 211, 318, 914, 973, 1120
BssNI GRCGYC 1 cut(s) 998
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 4 cut(s) 121, 237, 531, 637
Bst6I CTCTTC 8 cut(s) 22, 309, 747, 939, 1211, 1239, 1247, 1252
BstACI GRCGYC 1 cut(s) 998
BstAFI CTTAAG 1 cut(s) 215
BstAPI GCANNNNNTGC 1 cut(s) 1025
BstC8I GCNNGC 3 cut(s) 252, 710, 1017
BstDEI CTNAG 2 cut(s) 939, 1265
BstF5I GGATG 3 cut(s) 186, 1061, 1237
BstH2I RGCGCY 1 cut(s) 1001
BstHHI GCGC 2 cut(s) 1000, 1199
BstKTI GATC 5 cut(s) 214, 321, 917, 976, 1123
BstMBI GATC 5 cut(s) 211, 318, 914, 973, 1120
BstMCI CGRYCG 1 cut(s) 911
BstMWI GCNNNNNNNGC 2 cut(s) 1025, 1034
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 600
BstSCI CCNGG 3 cut(s) 229, 690, 910
BstSFI CTRYAG 2 cut(s) 564, 702
BstX2I RGATCY 1 cut(s) 914
BstYI RGATCY 1 cut(s) 914
BsuI GTATCC 1 cut(s) 531
BsuRI GGCC 2 cut(s) 708, 1108
BtsCI GGATG 3 cut(s) 186, 1061, 1237
BtsIMutI CAGTG 3 cut(s) 210, 582, 642
Cac8I GCNNGC 3 cut(s) 252, 710, 1017
CaiI CAGNNNCTG 1 cut(s) 209
CfoI GCGC 2 cut(s) 1000, 1199
Cfr13I GGNCC 2 cut(s) 227, 707
Csp6I GTAC 5 cut(s) 349, 402, 509, 532, 1141
CviAII CATG 2 cut(s) 346, 597
CviQI GTAC 5 cut(s) 349, 402, 509, 532, 1141
DdeI CTNAG 2 cut(s) 939, 1265
DinI GGCGCC 1 cut(s) 999
DpnI GATC 5 cut(s) 213, 320, 916, 975, 1122
DpnII GATC 5 cut(s) 211, 318, 914, 973, 1120
DraI TTTAAA 1 cut(s) 1272
Eam1104I CTCTTC 8 cut(s) 22, 309, 747, 939, 1211, 1239, 1247, 1252
EarI CTCTTC 8 cut(s) 22, 309, 747, 939, 1211, 1239, 1247, 1252
Ecl136II GAGCTC 2 cut(s) 798, 1262
Eco147I AGGCCT 1 cut(s) 1108
Eco24I GRGCYC 2 cut(s) 800, 1264
Eco47I GGWCC 1 cut(s) 227
Eco53kI GAGCTC 2 cut(s) 798, 1262
Eco57I CTGAAG 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 16
EcoICRI GAGCTC 2 cut(s) 798, 1262
EcoRI GAATTC 1 cut(s) 1167
EcoRII CCWGG 1 cut(s) 229
EcoT38I GRGCYC 2 cut(s) 800, 1264
EgeI GGCGCC 1 cut(s) 999
EheI GGCGCC 1 cut(s) 999
FaeI CATG 2 cut(s) 349, 600
FalI AAGNNNNNCTT 2 cut(s) 814, 846
FaqI GGGAC 1 cut(s) 622
FatI CATG 2 cut(s) 345, 596
FauI CCCGC 1 cut(s) 717
FauNDI CATATG 1 cut(s) 717
FbaI TGATCA 1 cut(s) 1120
Fnu4HI GCNGC 1 cut(s) 1001
FokI GGATG 3 cut(s) 173, 1068, 1244
FriOI GRGCYC 2 cut(s) 800, 1264
Fsp4HI GCNGC 1 cut(s) 1001
FspBI CTAG 5 cut(s) 224, 251, 647, 1187, 1325
GlaI GCGC 2 cut(s) 999, 1198
GluI GCNGC 1 cut(s) 1001
GsuI CTGGAG 1 cut(s) 1063
HaeII RGCGCY 1 cut(s) 1001
HaeIII GGCC 2 cut(s) 708, 1108
HapII CCGG 3 cut(s) 512, 692, 911
HhaI GCGC 2 cut(s) 1000, 1199
Hin1I GRCGYC 1 cut(s) 998
Hin1II CATG 2 cut(s) 349, 600
Hin6I GCGC 2 cut(s) 998, 1197
HinP1I GCGC 2 cut(s) 998, 1197
HindIII AAGCTT 2 cut(s) 380, 814
HinfI GANTC 6 cut(s) 220, 569, 742, 904, 1045, 1342
HpaII CCGG 3 cut(s) 512, 692, 911
HphI GGTGA 5 cut(s) 500, 814, 913, 1094, 1193
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 5 cut(s) 169, 211, 243, 931, 940
Hpy188III TCNNGA 5 cut(s) 16, 647, 1042, 1204, 1339
Hpy8I GTNNAC 1 cut(s) 446
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 4 cut(s) 162, 476, 1079, 1232
HpyCH4III ACNGT 4 cut(s) 121, 237, 531, 637
HpyCH4V TGCA 5 cut(s) 86, 413, 560, 1019, 1136
HpyF10VI GCNNNNNNNGC 2 cut(s) 1025, 1034
HpyF3I CTNAG 2 cut(s) 939, 1265
Hsp92I GRCGYC 1 cut(s) 998
Hsp92II CATG 2 cut(s) 349, 600
HspAI GCGC 2 cut(s) 998, 1197
KasI GGCGCC 1 cut(s) 997
Ksp22I TGATCA 1 cut(s) 1120
Kzo9I GATC 5 cut(s) 211, 318, 914, 973, 1120
LguI GCTCTTC 1 cut(s) 1252
LmnI GCTCC 2 cut(s) 736, 1034
LweI GCATC 1 cut(s) 569
MaeI CTAG 5 cut(s) 224, 251, 647, 1187, 1325
MaeIII GTNAC 3 cut(s) 181, 881, 980
MalI GATC 5 cut(s) 213, 320, 916, 975, 1122
MboI GATC 5 cut(s) 211, 318, 914, 973, 1120
MflI RGATCY 1 cut(s) 914
MhlI GDGCHC 2 cut(s) 800, 1264
MluCI AATT 2 cut(s) 966, 1167
Mly113I GGCGCC 1 cut(s) 998
MlyI GAGTC 3 cut(s) 751, 1054, 1336
MmeI TCCRAC 2 cut(s) 834, 1012
MroXI GAANNNNTTC 1 cut(s) 1089
MslI CAYNNNNRTG 1 cut(s) 1099
MspCI CTTAAG 1 cut(s) 215
MspI CCGG 3 cut(s) 512, 692, 911
MspR9I CCNGG 3 cut(s) 231, 692, 912
Mva1269I GAATGC 1 cut(s) 1138
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 1025, 1034
NarI GGCGCC 1 cut(s) 998
NciI CCSGG 2 cut(s) 692, 912
NdeI CATATG 1 cut(s) 717
NdeII GATC 5 cut(s) 211, 318, 914, 973, 1120
NheI GCTAGC 1 cut(s) 250
NlaIII CATG 2 cut(s) 349, 600
NlaIV GGNNCC 2 cut(s) 42, 999
NmeAIII GCCGAG 1 cut(s) 819
NspI RCATGY 1 cut(s) 600
PaeR7I CTCGAG 1 cut(s) 16
PceI AGGCCT 1 cut(s) 1108
PciI ACATGT 1 cut(s) 596
PciSI GCTCTTC 1 cut(s) 1252
PctI GAATGC 1 cut(s) 1138
PdmI GAANNNNTTC 1 cut(s) 1089
PfeI GAWTC 3 cut(s) 220, 569, 904
PkrI GCNGC 1 cut(s) 1002
PleI GAGTC 3 cut(s) 750, 1053, 1336
PluTI GGCGCC 1 cut(s) 1001
PpsI GAGTC 3 cut(s) 750, 1053, 1336
PscI ACATGT 1 cut(s) 596
PsiI TTATAA 1 cut(s) 603
Psp124BI GAGCTC 2 cut(s) 800, 1264
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 42, 999
PspPI GGNCC 2 cut(s) 227, 707
PsrI GAACNNNNNNTAC 2 cut(s) 24, 56
PstNI CAGNNNCTG 1 cut(s) 209
PsuI RGATCY 1 cut(s) 914
RsaI GTAC 5 cut(s) 350, 403, 510, 533, 1142
RsaNI GTAC 5 cut(s) 349, 402, 509, 532, 1141
RseI CAYNNNNRTG 1 cut(s) 1099
SacI GAGCTC 2 cut(s) 800, 1264
SapI GCTCTTC 1 cut(s) 1252
SatI GCNGC 1 cut(s) 1001
Sau3AI GATC 5 cut(s) 211, 318, 914, 973, 1120
Sau96I GGNCC 2 cut(s) 227, 707
ScaI AGTACT 1 cut(s) 403
SchI GAGTC 3 cut(s) 751, 1054, 1336
ScrFI CCNGG 3 cut(s) 231, 692, 912
SduI GDGCHC 2 cut(s) 800, 1264
SfaNI GCATC 1 cut(s) 569
SfcI CTRYAG 2 cut(s) 564, 702
SfoI GGCGCC 1 cut(s) 999
Sfr274I CTCGAG 1 cut(s) 16
SinI GGWCC 1 cut(s) 227
SlaI CTCGAG 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 1099
SmlI CTYRAG 4 cut(s) 16, 54, 215, 1302
SmoI CTYRAG 4 cut(s) 16, 54, 215, 1302
Sse9I AATT 2 cut(s) 966, 1167
SseBI AGGCCT 1 cut(s) 1108
SsiI CCGC 4 cut(s) 486, 710, 1001, 1028
SspDI GGCGCC 1 cut(s) 997
SspMI CTAG 5 cut(s) 224, 251, 647, 1187, 1325
SstI GAGCTC 2 cut(s) 800, 1264
StuI AGGCCT 1 cut(s) 1108
StyD4I CCNGG 3 cut(s) 229, 690, 910
TaaI ACNGT 4 cut(s) 121, 237, 531, 637
TaqI TCGA 5 cut(s) 17, 907, 976, 1064, 1203
TasI AATT 2 cut(s) 966, 1167
TatI WGTACW 2 cut(s) 348, 401
TauI GCSGC 1 cut(s) 1003
TfiI GAWTC 3 cut(s) 220, 569, 904
TscAI CASTG 3 cut(s) 210, 582, 642
TspDTI ATGAA 6 cut(s) 321, 334, 704, 1248, 1265, 1324
TspGWI ACGGA 1 cut(s) 986
TspRI CASTG 3 cut(s) 210, 582, 642
Vha464I CTTAAG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 1 cut(s) 1167
XbaI TCTAGA 1 cut(s) 646
XceI RCATGY 1 cut(s) 600
XhoI CTCGAG 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 1089
XspI CTAG 5 cut(s) 224, 251, 647, 1187, 1325
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.