Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Reverse (-)

5104041 .. 5104957

Gene Structure 917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAACAGGAACCCGAGAACAAAATCACATGCGTTATCCATGATGACCTTATGTACTTCACTGAAGCTGTAGCTAAGGATCTAAACATCCCAAACATCATGCTACAAACTATCAGCGTTACCAATTTTCTAGCTCGTACTGCTCTCCTACGGCATCATTCAAAAGGTCGCATCCCATTCAAAAGGTCACATCCCATTCCCAGAACACAACACTGTTGGATTGCAGACTCTCAGTCACTGAATCTGCAGCCCGATGTTGATCACCTCAGGTTGAAGGATCTGCCCACCAACAACTTCGACACATTAGAAAAGTACTCAGAACTAGCCGGTAATGCACACAATGTGAGGACAGCATCAGCAATCGTTTGGAACACCACTTATTGTCTTGAACAATCATCACTAGCACAGATCGATCAACAATGCCTAGTTCCAATCTTCTCCATAGGTCCTCTTCACAAGATTGAAGCAGCAGCTTCTAGTAGCTTACTAGAAGAGGACACCAGCTGCATTGGGTGGCTCGACAAGCAATCTAACAACGAGGTTATCTATGTACGCTTCGGAAGTGTAGCATCCATCAGTGAGAAAGAGCTCGCCGAAATGGCTTGGGGATTGGCTAACAGCAAGCAGCCTTTCTTATGGTCGATCAGACCTGGCTCAGTAAGTGGTTCAAATTGGATGGAGCTATTGCCTCAAGGTTTCATAGAAGCGAATGGAGAACACAGTTACATTGTAAAATGGGCACCCCAGAGGGAAGTTTTGTCCCATCGAGCAATCGGAGGGTTTTGGAGTCACTGCGGTTGGAACAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

271

Amino Acids

30.45

Weight (kDa)

5.99

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	739
AciI	CCGC	1 cut(s)	795
AclWI	GGATC	2 cut(s)	87, 285
AcuI	CTGAAG	1 cut(s)	84
AdeI	CACNNNGTG	1 cut(s)	343
AfaI	GTAC	4 cut(s)	56, 139, 314, 552
AgsI	TTSAA	6 cut(s)	162, 181, 274, 389, 464, 669
AhdI	GACNNNNNGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	649
AluBI	AGCT	8 cut(s)	68, 74, 134, 473, 483, 504, 589, 682
AluI	AGCT	8 cut(s)	68, 74, 134, 473, 483, 504, 589, 682
Alw21I	GWGCWC	1 cut(s)	591
AlwI	GGATC	2 cut(s)	87, 285
AlwNI	CAGNNNCTG	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	14
ApeKI	GCWGC	5 cut(s)	247, 467, 470, 504, 625
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	446
AxyI	CCTNAGG	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	742
BanI	GGYRCC	1 cut(s)	739
BanII	GRGCYC	1 cut(s)	591
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	5 cut(s)	259, 479, 482, 491, 637
BccI	CCATC	3 cut(s)	581, 670, 771
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	651
BclI	TGATCA	1 cut(s)	259
BfaI	CTAG	7 cut(s)	131, 323, 401, 425, 477, 488, 811
BfmI	CTRYAG	2 cut(s)	69, 245
BglI	GCCNNNNNGGC	1 cut(s)	599
BisI	GCNGC	5 cut(s)	248, 468, 471, 505, 626
BlsI	GCNGC	5 cut(s)	249, 469, 472, 506, 627
BmcAI	AGTACT	1 cut(s)	314
Bme1390I	CCNGG	1 cut(s)	651
Bme18I	GGWCC	1 cut(s)	446
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	2 cut(s)	12, 741
BmrFI	CCNGG	1 cut(s)	651
BmsI	GCATC	4 cut(s)	163, 180, 362, 578
Bpu10I	CCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	675
Bsa29I	ATCGAT	1 cut(s)	411
BsaBI	GATNNNNATC	1 cut(s)	258
Bse118I	RCCGGY	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	266
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	651
BseCI	ATCGAT	1 cut(s)	411
BseGI	GGATG	5 cut(s)	87, 171, 190, 569, 681
BseJI	GATNNNNATC	1 cut(s)	258
BseMII	CTCAG	4 cut(s)	245, 280, 330, 669
BseSI	GKGCMC	1 cut(s)	742
BseXI	GCAGC	5 cut(s)	259, 479, 482, 491, 637
BshNI	GGYRCC	1 cut(s)	739
BshVI	ATCGAT	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	591
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	745
BsmFI	GGGAC	1 cut(s)	745
BsoBI	CYCGRG	1 cut(s)	14
Bsp1286I	GDGCHC	2 cut(s)	591, 742
Bsp143I	GATC	6 cut(s)	79, 259, 277, 408, 412, 642
BspACI	CCGC	1 cut(s)	795
BspCNI	CTCAG	4 cut(s)	244, 279, 329, 668
BspDI	ATCGAT	1 cut(s)	411
BspLI	GGNNCC	2 cut(s)	12, 741
BspMAI	CTGCAG	1 cut(s)	249
BspPI	GGATC	2 cut(s)	87, 285
BspT107I	GGYRCC	1 cut(s)	739
BsrFI	RCCGGY	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	326
BssMI	GATC	6 cut(s)	79, 259, 277, 408, 412, 642
Bst2UI	CCWGG	1 cut(s)	651
Bst4CI	ACNGT	2 cut(s)	215, 722
Bst6I	CTCTTC	2 cut(s)	456, 486
BstC8I	GCNNGC	2 cut(s)	591, 623
BstDEI	CTNAG	5 cut(s)	75, 231, 266, 316, 655
BstF5I	GGATG	5 cut(s)	87, 171, 190, 569, 681
BstKTI	GATC	6 cut(s)	82, 262, 280, 411, 415, 645
BstMBI	GATC	6 cut(s)	79, 259, 277, 408, 412, 642
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 332, 523, 599
BstNI	CCWGG	1 cut(s)	651
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	649
BstSFI	CTRYAG	2 cut(s)	69, 245
BstSLI	GKGCMC	1 cut(s)	742
BstV1I	GCAGC	5 cut(s)	259, 479, 482, 491, 637
BstX2I	RGATCY	2 cut(s)	79, 277
BstYI	RGATCY	2 cut(s)	79, 277
Bsu15I	ATCGAT	1 cut(s)	411
Bsu36I	CCTNAGG	1 cut(s)	266
BsuTUI	ATCGAT	1 cut(s)	411
BtsCI	GGATG	5 cut(s)	87, 171, 190, 569, 681
BtsI	GCAGTG	1 cut(s)	790
BtsIMutI	CAGTG	5 cut(s)	60, 211, 236, 583, 790
Cac8I	GCNNGC	2 cut(s)	591, 623
CaiI	CAGNNNCTG	1 cut(s)	238
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	446
ClaI	ATCGAT	1 cut(s)	411
Csp6I	GTAC	4 cut(s)	55, 138, 313, 551
CviAII	CATG	3 cut(s)	30, 41, 100
CviQI	GTAC	4 cut(s)	55, 138, 313, 551
DdeI	CTNAG	5 cut(s)	75, 231, 266, 316, 655
DpnI	GATC	6 cut(s)	81, 261, 279, 410, 414, 644
DpnII	GATC	6 cut(s)	79, 259, 277, 408, 412, 642
DraIII	CACNNNGTG	1 cut(s)	343
DriI	GACNNNNNGTC	1 cut(s)	232
Eam1104I	CTCTTC	2 cut(s)	456, 486
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	2 cut(s)	456, 486
Ecl136II	GAGCTC	1 cut(s)	589
Eco24I	GRGCYC	1 cut(s)	591
Eco47I	GGWCC	1 cut(s)	446
Eco53kI	GAGCTC	1 cut(s)	589
Eco57I	CTGAAG	1 cut(s)	84
Eco81I	CCTNAGG	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	14
EcoICRI	GAGCTC	1 cut(s)	589
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	649
EcoT38I	GRGCYC	1 cut(s)	591
FaeI	CATG	3 cut(s)	33, 44, 103
FaiI	YATR	8 cut(s)	31, 42, 53, 101, 443, 549, 637, 701
FaqI	GGGAC	1 cut(s)	745
FatI	CATG	3 cut(s)	29, 40, 99
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	5 cut(s)	248, 468, 471, 505, 626
FokI	GGATG	5 cut(s)	74, 158, 177, 556, 688
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	5 cut(s)	248, 468, 471, 505, 626
FspBI	CTAG	7 cut(s)	131, 323, 401, 425, 477, 488, 811
GluI	GCNGC	5 cut(s)	248, 468, 471, 505, 626
HapII	CCGG	1 cut(s)	327
Hin1II	CATG	3 cut(s)	33, 44, 103
HinfI	GANTC	3 cut(s)	227, 241, 787
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	1 cut(s)	254
Hpy188I	TCNGA	4 cut(s)	319, 560, 647, 776
Hpy188III	TCNNGA	1 cut(s)	386
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	2 cut(s)	215, 722
HpyCH4V	TGCA	4 cut(s)	224, 247, 335, 507
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 332, 523, 599
HpyF3I	CTNAG	5 cut(s)	75, 231, 266, 316, 655
Hsp92II	CATG	3 cut(s)	33, 44, 103
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	6 cut(s)	79, 259, 277, 408, 412, 642
LmnI	GCTCC	1 cut(s)	679
LpnPI	CCDG	7 cut(s)	214, 253, 340, 514, 636, 663, 758
Lsp1109I	GCAGC	5 cut(s)	259, 479, 482, 491, 637
LweI	GCATC	4 cut(s)	163, 180, 362, 578
MaeI	CTAG	7 cut(s)	131, 323, 401, 425, 477, 488, 811
MaeIII	GTNAC	5 cut(s)	118, 186, 234, 722, 788
MalI	GATC	6 cut(s)	81, 261, 279, 410, 414, 644
MboI	GATC	6 cut(s)	79, 259, 277, 408, 412, 642
MboII	GAAGA	3 cut(s)	427, 443, 503
MflI	RGATCY	2 cut(s)	79, 277
MhlI	GDGCHC	2 cut(s)	591, 742
MluCI	AATT	2 cut(s)	124, 670
MlyI	GAGTC	2 cut(s)	221, 796
MmeI	TCCRAC	2 cut(s)	197, 779
MnlI	CCTC	8 cut(s)	275, 339, 459, 487, 532, 699, 741, 770
MspA1I	CMGCKG	1 cut(s)	504
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	651
MvaI	CCWGG	1 cut(s)	651
MwoI	GCNNNNNNNGC	4 cut(s)	140, 332, 523, 599
NdeII	GATC	6 cut(s)	79, 259, 277, 408, 412, 642
NlaIII	CATG	3 cut(s)	33, 44, 103
NlaIV	GGNNCC	2 cut(s)	12, 741
NmuCI	GTSAC	3 cut(s)	186, 234, 788
NspI	RCATGY	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	5 cut(s)	249, 469, 472, 506, 627
PleI	GAGTC	2 cut(s)	221, 795
PpsI	GAGTC	2 cut(s)	221, 795
PpuMI	RGGWCCY	1 cut(s)	446
Psp124BI	GAGCTC	1 cut(s)	591
Psp5II	RGGWCCY	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	649
PspN4I	GGNNCC	2 cut(s)	12, 741
PspPI	GGNCC	1 cut(s)	446
PspPPI	RGGWCCY	1 cut(s)	446
PstI	CTGCAG	1 cut(s)	249
PstNI	CAGNNNCTG	1 cut(s)	238
PsuI	RGATCY	2 cut(s)	79, 277
PvuII	CAGCTG	1 cut(s)	504
RsaI	GTAC	4 cut(s)	56, 139, 314, 552
RsaNI	GTAC	4 cut(s)	55, 138, 313, 551
SacI	GAGCTC	1 cut(s)	591
SatI	GCNGC	5 cut(s)	248, 468, 471, 505, 626
Sau3AI	GATC	6 cut(s)	79, 259, 277, 408, 412, 642
Sau96I	GGNCC	1 cut(s)	446
ScaI	AGTACT	1 cut(s)	314
SchI	GAGTC	2 cut(s)	221, 796
ScrFI	CCNGG	1 cut(s)	651
SduI	GDGCHC	2 cut(s)	591, 742
SfaNI	GCATC	4 cut(s)	163, 180, 362, 578
SfcI	CTRYAG	2 cut(s)	69, 245
SinI	GGWCC	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	690
SmoI	CTYRAG	1 cut(s)	690
Sse9I	AATT	2 cut(s)	124, 670
SsiI	CCGC	1 cut(s)	795
SspMI	CTAG	7 cut(s)	131, 323, 401, 425, 477, 488, 811
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	1 cut(s)	649
TaaI	ACNGT	2 cut(s)	215, 722
TaqI	TCGA	5 cut(s)	297, 411, 519, 641, 766
TasI	AATT	2 cut(s)	124, 670
TatI	WGTACW	2 cut(s)	54, 312
TfiI	GAWTC	1 cut(s)	241
TscAI	CASTG	5 cut(s)	67, 218, 243, 583, 797
TseFI	GTSAC	3 cut(s)	186, 234, 788
TseI	GCWGC	5 cut(s)	247, 467, 470, 504, 625
Tsp45I	GTSAC	3 cut(s)	186, 234, 788
TspDTI	ATGAA	1 cut(s)	688
TspRI	CASTG	5 cut(s)	67, 218, 243, 583, 797
VpaK11BI	GGWCC	1 cut(s)	446
XceI	RCATGY	1 cut(s)	33
XspI	CTAG	7 cut(s)	131, 323, 401, 425, 477, 488, 811
ZrmI	AGTACT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.