Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Reverse (-)

5095686 .. 5096534

Gene Structure 849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTTGATCGACCTCAGGTTGAAGGATCTGCCTACCAACAACTTCGACACAGTAGAAAGGTACTCAGAACTAGCCGGTAATGCACACGATGTGAGGACAGCATCAGCAATCGTTTGGAACACCACTGATTGTCTTGAACGATCATCACTTGCAAAGATCCAGCAACAATGCCCAGTTCCAATCTTCTCCATAGGTCCTCTTCACAAGATTGAAGCAGCAGCTTCTAGTAGCTTACTAGAAGAGGACACCAACTGCATTGGGTGGCTCGACAAGCAATCTAACAACGCGGTTATCTATGTAAGCTTGGGAAGTGTAGCATCCATCAGTGAGAAAGAGCTCGCCGAAATGGCTTGGGGATTGGCTAACAGCGAGCAGCCTTTCTTATGGTTGATCAGACCTGGCTCAGTAGGTGGTTCAAATTGGATGGAGCTATTGCCTAAAGGTTTCATAGAAGCGATTGGAGAACGCGGTTACATTGTAAAATGGGCACCCCAGAGGAAAGTTTTGTCCCATCGCGCAATCGGAGGGTTTTGGAGCCACTGCGGTTGGAACTCAACGCTAGAGAGTTTGTCCGAAGGGATTCCGATGATATGCCTGCCGTCTTTTGGCGACCAGAAGGTGCATTCAAGGTATGTTAGCCTAGTATGGAAAGTAGGGATACATTTAGACAATGAGGTAGAGAGAGGAGAGATTGAGAGAGCTGTCCGGAAACTGATGGTAGATGCTGATGGGGAGGTGATGAGGGTTAGGGCCAAGGATTTGAAGGAGAAAATAGAAGTTTCTTTGAGGAAAGGTGGTTCTTCCTACAAATTATTGAATAAGCTTGTAGAACTCATCATGTCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

283

Amino Acids

31.42

Weight (kDa)

6.12

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	92 - 247	8.8e-26	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	487
AccII	CGCG	3 cut(s)	287, 468, 516
AccIII	TCCGGA	1 cut(s)	705
AciI	CCGC	3 cut(s)	287, 468, 543
AclWI	GGATC	2 cut(s)	33, 151
AdeI	CACNNNGTG	1 cut(s)	91
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	605
AgsI	TTSAA	7 cut(s)	22, 137, 212, 417, 627, 763, 817
AjnI	CCWGG	1 cut(s)	397
AloI	GAACNNNNNNTCC	2 cut(s)	781, 813
AluBI	AGCT	7 cut(s)	221, 231, 303, 337, 430, 701, 823
AluI	AGCT	7 cut(s)	221, 231, 303, 337, 430, 701, 823
Alw21I	GWGCWC	1 cut(s)	339
AlwI	GGATC	2 cut(s)	33, 151
Aor13HI	TCCGGA	1 cut(s)	705
AoxI	GGCC	1 cut(s)	750
ApeKI	GCWGC	3 cut(s)	215, 218, 373
Asp700I	GAANNNNTTC	1 cut(s)	579
AspLEI	GCGC	1 cut(s)	518
AspS9I	GGNCC	2 cut(s)	194, 750
AsuHPI	GGTGA	1 cut(s)	748
AvaII	GGWCC	1 cut(s)	194
AxyI	CCTNAGG	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	490
BanI	GGYRCC	1 cut(s)	487
BanII	GRGCYC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	3 cut(s)	227, 230, 385
BccI	CCATC	5 cut(s)	329, 418, 519, 709, 722
BceAI	ACGGC	1 cut(s)	583
BciT130I	CCWGG	1 cut(s)	399
BciVI	GTATCC	1 cut(s)	651
BclI	TGATCA	1 cut(s)	390
BfaI	CTAG	5 cut(s)	71, 225, 236, 560, 641
BfuI	GTATCC	1 cut(s)	651
BglI	GCCNNNNNGGC	1 cut(s)	347
BisI	GCNGC	3 cut(s)	216, 219, 374
BlsI	GCNGC	3 cut(s)	217, 220, 375
Bme1390I	CCNGG	1 cut(s)	399
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	2 cut(s)	194, 750
BmiI	GGNNCC	2 cut(s)	489, 536
BmrFI	CCNGG	1 cut(s)	399
BmrI	ACTGGG	1 cut(s)	167
BmsI	GCATC	3 cut(s)	110, 326, 712
BmuI	ACTGGG	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	753
BsaWI	WCCGGW	1 cut(s)	705
Bsc4I	CCNNNNNNNGG	1 cut(s)	605
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	173
Bse21I	CCTNAGG	1 cut(s)	14
BseAI	TCCGGA	1 cut(s)	705
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	753
BseGI	GGATG	2 cut(s)	317, 429
BseLI	CCNNNNNNNGG	1 cut(s)	605
BseMII	CTCAG	3 cut(s)	28, 78, 417
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	699
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	3 cut(s)	227, 230, 385
Bsh1236I	CGCG	3 cut(s)	287, 468, 516
BshFI	GGCC	1 cut(s)	752
BshNI	GGYRCC	1 cut(s)	487
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	2 cut(s)	75, 706
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	1 cut(s)	605
BsmFI	GGGAC	1 cut(s)	493
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	1 cut(s)	752
Bsp1286I	GDGCHC	2 cut(s)	339, 490
Bsp13I	TCCGGA	1 cut(s)	705
Bsp143I	GATC	5 cut(s)	6, 25, 140, 156, 390
BspACI	CCGC	3 cut(s)	287, 468, 543
BspANI	GGCC	1 cut(s)	752
BspCNI	CTCAG	3 cut(s)	27, 77, 416
BspEI	TCCGGA	1 cut(s)	705
BspFNI	CGCG	3 cut(s)	287, 468, 516
BspLI	GGNNCC	2 cut(s)	489, 536
BspPI	GGATC	2 cut(s)	33, 151
BspT107I	GGYRCC	1 cut(s)	487
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	753
BssMI	GATC	5 cut(s)	6, 25, 140, 156, 390
BssT1I	CCWWGG	1 cut(s)	753
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	2 cut(s)	204, 234
BstC8I	GCNNGC	3 cut(s)	339, 371, 596
BstDEI	CTNAG	3 cut(s)	14, 64, 403
BstF5I	GGATG	2 cut(s)	317, 429
BstFNI	CGCG	3 cut(s)	287, 468, 516
BstHHI	GCGC	1 cut(s)	518
BstKTI	GATC	5 cut(s)	9, 28, 143, 159, 393
BstMBI	GATC	5 cut(s)	6, 25, 140, 156, 390
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 271, 347
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	397
BstSLI	GKGCMC	1 cut(s)	490
BstUI	CGCG	3 cut(s)	287, 468, 516
BstV1I	GCAGC	3 cut(s)	227, 230, 385
BstX2I	RGATCY	2 cut(s)	25, 156
BstYI	RGATCY	2 cut(s)	25, 156
Bsu36I	CCTNAGG	1 cut(s)	14
BsuI	GTATCC	1 cut(s)	651
BsuRI	GGCC	1 cut(s)	752
BtgZI	GCGATG	1 cut(s)	497
BtsCI	GGATG	2 cut(s)	317, 429
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	3 cut(s)	123, 331, 538
Cac8I	GCNNGC	3 cut(s)	339, 371, 596
CfoI	GCGC	1 cut(s)	518
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	194, 750
Csp6I	GTAC	1 cut(s)	61
CspCI	CAANNNNNGTGG	2 cut(s)	527, 562
CviAII	CATG	1 cut(s)	838
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	3 cut(s)	14, 64, 403
DpnI	GATC	5 cut(s)	8, 27, 142, 158, 392
DpnII	GATC	5 cut(s)	6, 25, 140, 156, 390
DraIII	CACNNNGTG	1 cut(s)	91
Eam1104I	CTCTTC	2 cut(s)	204, 234
EarI	CTCTTC	2 cut(s)	204, 234
Ecl136II	GAGCTC	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	753
Eco24I	GRGCYC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	337
Eco81I	CCTNAGG	1 cut(s)	14
EcoICRI	GAGCTC	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	753
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	753
FaeI	CATG	1 cut(s)	841
FaiI	YATR	8 cut(s)	191, 297, 385, 449, 592, 633, 646, 839
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	1 cut(s)	837
FbaI	TGATCA	1 cut(s)	390
Fnu4HI	GCNGC	3 cut(s)	216, 219, 374
FokI	GGATG	2 cut(s)	304, 436
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	3 cut(s)	216, 219, 374
FspBI	CTAG	5 cut(s)	71, 225, 236, 560, 641
GlaI	GCGC	1 cut(s)	517
GluI	GCNGC	3 cut(s)	216, 219, 374
HaeIII	GGCC	1 cut(s)	752
HapII	CCGG	2 cut(s)	75, 706
HhaI	GCGC	1 cut(s)	518
Hin1II	CATG	1 cut(s)	841
Hin6I	GCGC	1 cut(s)	516
HinP1I	GCGC	1 cut(s)	516
HindIII	AAGCTT	2 cut(s)	301, 821
HinfI	GANTC	1 cut(s)	580
HpaII	CCGG	2 cut(s)	75, 706
HphI	GGTGA	1 cut(s)	748
Hpy188I	TCNGA	5 cut(s)	67, 395, 524, 574, 585
Hpy188III	TCNNGA	2 cut(s)	134, 706
HpyAV	CCTTC	4 cut(s)	16, 569, 610, 757
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	4 cut(s)	83, 152, 255, 622
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 271, 347
HpyF3I	CTNAG	3 cut(s)	14, 64, 403
Hsp92II	CATG	1 cut(s)	841
HspAI	GCGC	1 cut(s)	516
Kpn2I	TCCGGA	1 cut(s)	705
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	5 cut(s)	6, 25, 140, 156, 390
LmnI	GCTCC	2 cut(s)	427, 534
LpnPI	CCDG	9 cut(s)	88, 173, 186, 384, 411, 506, 608, 626, 719
Lsp1109I	GCAGC	3 cut(s)	227, 230, 385
LweI	GCATC	3 cut(s)	110, 326, 712
MaeI	CTAG	5 cut(s)	71, 225, 236, 560, 641
MaeIII	GTNAC	2 cut(s)	470, 840
MalI	GATC	5 cut(s)	8, 27, 142, 158, 392
MboI	GATC	5 cut(s)	6, 25, 140, 156, 390
MboII	GAAGA	4 cut(s)	175, 191, 251, 792
MflI	RGATCY	2 cut(s)	25, 156
MhlI	GDGCHC	2 cut(s)	339, 490
MluCI	AATT	2 cut(s)	418, 809
MmeI	TCCRAC	1 cut(s)	527
MroI	TCCGGA	1 cut(s)	705
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	1 cut(s)	847
MspI	CCGG	2 cut(s)	75, 706
MspR9I	CCNGG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	1 cut(s)	399
MvnI	CGCG	3 cut(s)	287, 468, 516
MwoI	GCNNNNNNNGC	3 cut(s)	80, 271, 347
NdeII	GATC	5 cut(s)	6, 25, 140, 156, 390
NlaIII	CATG	1 cut(s)	841
NlaIV	GGNNCC	2 cut(s)	489, 536
NmuCI	GTSAC	1 cut(s)	840
PctI	GAATGC	1 cut(s)	622
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	1 cut(s)	580
PkrI	GCNGC	3 cut(s)	217, 220, 375
PpuMI	RGGWCCY	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	2 cut(s)	489, 536
PspPI	GGNCC	2 cut(s)	194, 750
PspPPI	RGGWCCY	1 cut(s)	194
PsuI	RGATCY	2 cut(s)	25, 156
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	847
SatI	GCNGC	3 cut(s)	216, 219, 374
Sau3AI	GATC	5 cut(s)	6, 25, 140, 156, 390
Sau96I	GGNCC	2 cut(s)	194, 750
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	2 cut(s)	339, 490
SfaNI	GCATC	3 cut(s)	110, 326, 712
SinI	GGWCC	1 cut(s)	194
Sse9I	AATT	2 cut(s)	418, 809
SsiI	CCGC	3 cut(s)	287, 468, 543
SspMI	CTAG	5 cut(s)	71, 225, 236, 560, 641
SstI	GAGCTC	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	753
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	3 cut(s)	9, 45, 267
TasI	AATT	2 cut(s)	418, 809
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	1 cut(s)	847
Tru9I	TTAA	1 cut(s)	847
TscAI	CASTG	3 cut(s)	130, 331, 545
TseFI	GTSAC	1 cut(s)	840
TseI	GCWGC	3 cut(s)	215, 218, 373
Tsp45I	GTSAC	1 cut(s)	840
TspDTI	ATGAA	1 cut(s)	436
TspRI	CASTG	3 cut(s)	130, 331, 545
VpaK11BI	GGWCC	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	5 cut(s)	71, 225, 236, 560, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.