Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Reverse (-)

6653430 .. 6653933

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1082400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCTTGGGGATTGGCTAACAGCAAGCAGCCTTTCTTATGGGTGATAAGACCTGGCTCAGTAAGTGGTTCAGATGGGATTGAGCTATTGCCTCAAGGTTTCGTAGAAGCGATTGGAGAACGCGGTTACATTGTAAAATGGGCACCCCAGAGGGAAGTTTTGTCCCATCTTGCAGTAGGAGGGTTTTGGAGCCACTGCGGTTGGAACTCAACGCTAGAGAGTTTGTCAGAAGGGATTCCAATGATATGCCTGCCGTCTTTTGGCGATCAGAAGGTGCATTCAAGGTATGTTAGCCAAGTATGGAAAGTAGGGCTACATTTAGACAATGAGTTAGAGAGAGGAGAGATTGAGAGAGCTGTCAGGAAACTGATGGTAGATGCTGATGGGGAGGTGATGAGGGTTAGGGCCAAGGATTTGAAGGAGAAAATAGAAGTTTCTTTAAGGAATGGTGGTTCTTCCTACAAATTCTTGAATAAGCTTGTAGAACTTATCATGTCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

168

Amino Acids

18.69

Weight (kDa)

6.91

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	1 - 132	3.7e-20	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AccII	CGCG	1 cut(s)	123
AciI	CCGC	2 cut(s)	123, 198
AcsI	RAATTY	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	3 cut(s)	282, 418, 472
AjnI	CCWGG	1 cut(s)	52
AloI	GAACNNNNNNTCC	2 cut(s)	436, 468
AluBI	AGCT	3 cut(s)	85, 356, 478
AluI	AGCT	3 cut(s)	85, 356, 478
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	464
Asp700I	GAANNNNTTC	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	405
AsuHPI	GGTGA	2 cut(s)	55, 403
BaeGI	GKGCMC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	4 cut(s)	68, 174, 364, 377
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	1 cut(s)	54
BfaI	CTAG	1 cut(s)	215
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	405
BmiI	GGNNCC	2 cut(s)	144, 191
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	354
BseSI	GKGCMC	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	407
BshNI	GGYRCC	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	2 cut(s)	123, 198
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	1 cut(s)	71
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	144, 191
BspT107I	GGYRCC	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	1 cut(s)	265
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	26, 251
BstDEI	CTNAG	1 cut(s)	58
BstFNI	CGCG	1 cut(s)	123
BstKTI	GATC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	265
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	52
BstSLI	GKGCMC	1 cut(s)	145
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	407
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	26, 251
Cfr13I	GGNCC	1 cut(s)	405
CspCI	CAANNNNNGTGG	2 cut(s)	182, 217
CviAII	CATG	1 cut(s)	493
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	1 cut(s)	496
FaiI	YATR	5 cut(s)	40, 247, 288, 301, 494
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	1 cut(s)	492
Fnu4HI	GCNGC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	407
Hin1II	CATG	1 cut(s)	496
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	1 cut(s)	235
HphI	GGTGA	2 cut(s)	55, 403
Hpy188I	TCNGA	3 cut(s)	73, 229, 270
Hpy188III	TCNNGA	2 cut(s)	361, 469
HpyAV	CCTTC	3 cut(s)	224, 265, 412
HpyCH4V	TGCA	2 cut(s)	173, 277
HpyF3I	CTNAG	1 cut(s)	58
Hsp92II	CATG	1 cut(s)	496
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	5 cut(s)	39, 66, 161, 263, 346
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	125, 495
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	1 cut(s)	464
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	6 cut(s)	102, 144, 173, 332, 382, 390
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	2 cut(s)	440, 502
MspR9I	CCNGG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	123
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	496
NlaIV	GGNNCC	2 cut(s)	144, 191
NmuCI	GTSAC	1 cut(s)	495
PctI	GAATGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	144, 191
PspPI	GGNCC	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	440, 502
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	405
ScrFI	CCNGG	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	8 cut(s)	55, 87, 100, 276, 287, 358, 393, 480
SfaNI	GCATC	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
Sse9I	AATT	1 cut(s)	464
SsiI	CCGC	2 cut(s)	123, 198
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	52
StyI	CCWWGG	1 cut(s)	408
TasI	AATT	1 cut(s)	464
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	2 cut(s)	440, 502
Tru9I	TTAA	2 cut(s)	440, 502
TscAI	CASTG	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	495
TseI	GCWGC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	495
TspRI	CASTG	1 cut(s)	200
XapI	RAATTY	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.