Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Forward (+)

73212155 .. 73219247

Gene Structure 7093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG457900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAGATGCAAAAGAGAACCCCGAGAGGTCAGAGATTGGTCCTAGTTCCAACTCCATACCAAGGCCACATAAACCCAATGCTTCAGTTGGGTACGTTTCTTCACTCAAAGGGATTTTCCATTACCATCGTTCACACCCATTTCAACTCTCCAAGCCCTTCCAACCACCCTGAGTTCACATTCATTCCGATTCAAGACGGCCTAACTGTTCCTCTAGTCTCATCCGGGAATATAATAGCTATTCTGTTGGCTCTCAATGCCAATTGCAAATCGAGTTTCGAACAATGTTTAGCTACTCAAGTAATGAAACAAGAACCGGAGAAGAAGATCACCTGCATCATCTACGATGAATTCATGTACTTCTCTGAAGCTGCTGCTAATTATCTGAATATTCCAAGCATCATCCTCCGTACTACCAGTGCAGCCAACTTTCATGCTCGATCTACCGTCGTAGAACTTTATTCAAAAGGCCACATTCCCTTCCCAGGTTGCTCGGCTACTGTGACTATAGATGTAACTTGGCTTTTCATATTTCTGGTTCAAGGGTTAGCTGGAGACGAAGAAGGGTACATCGACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

193

Amino Acids

21.45

Weight (kDa)

6.36

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	341
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	2 cut(s)	68, 387
AfaI	GTAC	4 cut(s)	94, 359, 412, 569
AfiI	CCNNNNNNNGG	2 cut(s)	62, 485
AgsI	TTSAA	4 cut(s)	145, 194, 465, 542
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	4 cut(s)	239, 293, 371, 551
AluI	AGCT	4 cut(s)	239, 293, 371, 551
Alw26I	GTCTC	2 cut(s)	223, 549
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	3 cut(s)	64, 199, 469
ApeKI	GCWGC	3 cut(s)	371, 374, 422
ApoI	RAATTY	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	322
AsuII	TTCGAA	1 cut(s)	279
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	40
BbvI	GCAGC	3 cut(s)	358, 361, 434
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	486
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	223, 549
BfaI	CTAG	2 cut(s)	44, 215
BfmI	CTRYAG	1 cut(s)	507
BfuAI	ACCTGC	1 cut(s)	341
BisI	GCNGC	3 cut(s)	372, 375, 423
BlsI	GCNGC	3 cut(s)	373, 376, 424
Bme1390I	CCNGG	2 cut(s)	226, 486
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	226, 486
BmsI	GCATC	2 cut(s)	345, 408
BpmI	CTGGAG	1 cut(s)	573
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	226
BsaJI	CCNNGG	2 cut(s)	61, 484
BsaWI	WCCGGW	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 485
Bse1I	ACTGG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	61, 484
BseGI	GGATG	2 cut(s)	221, 402
BseLI	CCNNNNNNNGG	2 cut(s)	62, 485
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	417
BseXI	GCAGC	3 cut(s)	358, 361, 434
BsgI	GTGCAG	1 cut(s)	441
BshFI	GGCC	3 cut(s)	66, 201, 471
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	2 cut(s)	225, 317
BslI	CCNNNNNNNGG	2 cut(s)	62, 485
BsmAI	GTCTC	2 cut(s)	223, 549
BsmBI	CGTCTC	1 cut(s)	549
BsnI	GGCC	3 cut(s)	66, 201, 471
BsoBI	CYCGRG	1 cut(s)	22
Bsp119I	TTCGAA	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	327, 440
BspANI	GGCC	3 cut(s)	66, 201, 471
BspCNI	CTCAG	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	341
BspT104I	TTCGAA	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	2 cut(s)	61, 484
BssMI	GATC	2 cut(s)	327, 440
BssT1I	CCWWGG	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	3 cut(s)	208, 448, 502
BstBI	TTCGAA	1 cut(s)	279
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	221, 402
BstKTI	GATC	2 cut(s)	330, 443
BstMAI	GTCTC	2 cut(s)	223, 549
BstMBI	GATC	2 cut(s)	327, 440
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	486
BstSCI	CCNGG	2 cut(s)	224, 484
BstSFI	CTRYAG	1 cut(s)	507
BstV1I	GCAGC	3 cut(s)	358, 361, 434
BsuRI	GGCC	3 cut(s)	66, 201, 471
BtsCI	GGATG	2 cut(s)	221, 402
BtsIMutI	CAGTG	1 cut(s)	424
BveI	ACCTGC	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	4 cut(s)	93, 358, 411, 568
CviAII	CATG	2 cut(s)	355, 434
CviQI	GTAC	4 cut(s)	93, 358, 411, 568
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	2 cut(s)	329, 442
DpnII	GATC	2 cut(s)	327, 440
Eco130I	CCWWGG	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	2 cut(s)	68, 387
Eco88I	CYCGRG	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
Esp3I	CGTCTC	1 cut(s)	549
FaeI	CATG	2 cut(s)	358, 437
FaiI	YATR	7 cut(s)	58, 71, 233, 356, 435, 509, 530
FatI	CATG	2 cut(s)	354, 433
Fnu4HI	GCNGC	3 cut(s)	372, 375, 423
FokI	GGATG	2 cut(s)	208, 389
Fsp4HI	GCNGC	3 cut(s)	372, 375, 423
FspBI	CTAG	2 cut(s)	44, 215
GluI	GCNGC	3 cut(s)	372, 375, 423
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	3 cut(s)	66, 201, 471
HapII	CCGG	2 cut(s)	225, 317
Hin1II	CATG	2 cut(s)	358, 437
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	2 cut(s)	225, 317
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	2 cut(s)	133, 177
Hpy188I	TCNGA	4 cut(s)	33, 189, 367, 387
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	2 cut(s)	133, 177
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	3 cut(s)	168, 490, 557
HpyCH4III	ACNGT	3 cut(s)	208, 448, 502
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	4 cut(s)	10, 267, 336, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	358, 437
Kzo9I	GATC	2 cut(s)	327, 440
LpnPI	CCDG	9 cut(s)	183, 238, 330, 346, 430, 471, 498, 521, 537
Lsp1109I	GCAGC	3 cut(s)	358, 361, 434
LweI	GCATC	2 cut(s)	345, 408
MaeI	CTAG	2 cut(s)	44, 215
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	2 cut(s)	502, 514
MalI	GATC	2 cut(s)	329, 442
MboI	GATC	2 cut(s)	327, 440
MboII	GAAGA	4 cut(s)	92, 334, 337, 572
MfeI	CAATTG	1 cut(s)	262
MluCI	AATT	3 cut(s)	262, 350, 379
MmeI	TCCRAC	2 cut(s)	74, 186
MnlI	CCTC	3 cut(s)	20, 222, 416
MspI	CCGG	2 cut(s)	225, 317
MspR9I	CCNGG	2 cut(s)	226, 486
MunI	CAATTG	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	486
MwoI	GCNNNNNNNGC	1 cut(s)	257
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	2 cut(s)	327, 440
NlaIII	CATG	2 cut(s)	358, 437
NmeAIII	GCCGAG	1 cut(s)	473
NmuCI	GTSAC	1 cut(s)	502
NspV	TTCGAA	1 cut(s)	279
PaqCI	CACCTGC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	190
PfoI	TCCNGGA	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	373, 376, 424
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspPI	GGNCC	1 cut(s)	40
RsaI	GTAC	4 cut(s)	94, 359, 412, 569
RsaNI	GTAC	4 cut(s)	93, 358, 411, 568
SatI	GCNGC	3 cut(s)	372, 375, 423
Sau3AI	GATC	2 cut(s)	327, 440
Sau96I	GGNCC	1 cut(s)	40
ScrFI	CCNGG	2 cut(s)	226, 486
SetI	ASST	8 cut(s)	31, 98, 241, 295, 335, 373, 490, 553
SfaNI	GCATC	2 cut(s)	345, 408
SfcI	CTRYAG	1 cut(s)	507
SfuI	TTCGAA	1 cut(s)	279
SinI	GGWCC	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	3 cut(s)	262, 350, 379
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	2 cut(s)	44, 215
StyD4I	CCNGG	2 cut(s)	224, 484
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	3 cut(s)	208, 448, 502
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	4 cut(s)	272, 279, 439, 573
TasI	AATT	3 cut(s)	262, 350, 379
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	1 cut(s)	190
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	3 cut(s)	371, 374, 422
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	6 cut(s)	172, 320, 343, 363, 422, 517
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	350
XspI	CTAG	2 cut(s)	44, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.