Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000151.1

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Reverse (-)

32735 .. 34233

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000151.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

atggaatatcaacaagagagatgccgcagagtggtgctggttcctctgccttttcaaggccacataaccccaatgcttcatctgggcactatccttcattccaaaggctttcacatcacaatcgctcatacccagttcaactttcccaacccgctgaactaccctcatttcgactttttagagttgtccaatggcatatgtgagcaaaatatatctgcccacaactttatagccgtgatatcaggtttcaacaccaactgcaaaggacatctccgggaatcgttggctacgataatggagaaagaggaccaacccaataagattgcttgcatcatctatgatgaatatatgtactttgcagaagaggtggccaattatctaaggattcctagtatcatattatgtactagcagtgcagcaaagacgctaagttacctcgcaattcctaggctccaaaacgatggttacattccccttcaagattctatgatgttggaactagtaccaggacttgaaccactcagatttaaggacctaaccttcacatatttcagaaatttgctacaactgatagcaaaagcccttgatcgaaggtcatcttcagccatcatctggaacaccatggattgtctcgagcaatcaacattgacaaagatccagcaggaataccaacttccgttgttccctatcggccctctcaacaaaactgttccggccatatccatcagcttgttgaaagaggaccagagttgcattccatggcttgacaaacaatcacacaactctgtcatctatataagcctcggaagcgtagcttccatggacaataaagacctagttgaaatggcatggggtctctccaacagtgagcagcctttcttgtgggtggtccgaacggactccacagcactgccagaaggtttccaccaagctgttggagacaggggttgcatagtaaaatgggcaccccaaaaggaagtcttggcacacactgcagttggagggttttggagtcactgtggttggaattcaaccattgaaagtatctctgaaggagttccgttgatatgccaaccttattttggggaccagcgagtgaatgcaaggtacttgacccaagtttggggagtagggttagaatgggagaatgacatgaacagaggagaaatagagggggctataagaaggcttatggtgggtaaagaaggagggctgataagggaaagagcaaaagaattgagggagaaaattgaatccagtatgaagcagggtggttcttcctacaattccttgaatgatttggtggaccttattttatcattctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

441

Amino Acids

49.91

Weight (kDa)

5.68

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	964
AccB7I	CCANNNNNTGG	1 cut(s)	612
AciI	CCGC	2 cut(s)	25, 152
AclWI	GGATC	1 cut(s)	649
AcoI	YGGCCR	2 cut(s)	369, 714
AcsI	RAATTY	2 cut(s)	556, 1027
AcuI	CTGAAG	2 cut(s)	585, 1071
AfaI	GTAC	4 cut(s)	353, 406, 504, 1109
AfiI	CCNNNNNNNGG	6 cut(s)	31, 56, 612, 1082, 1122, 1123
AhlI	ACTAGT	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	3 cut(s)	729, 815, 932
AluI	AGCT	3 cut(s)	729, 815, 932
Alw26I	GTCTC	3 cut(s)	635, 860, 933
AlwI	GGATC	1 cut(s)	649
Ama87I	CYCGRG	1 cut(s)	632
AoxI	GGCC	4 cut(s)	58, 369, 691, 714
ApeKI	GCWGC	2 cut(s)	416, 871
ApoI	RAATTY	2 cut(s)	556, 1027
Asp700I	GAANNNNTTC	1 cut(s)	1056
AspA2I	CCTAGG	1 cut(s)	446
AspS9I	GGNCC	7 cut(s)	307, 532, 692, 742, 889, 1087, 1306
AsuC2I	CCSGG	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	632
AvaII	GGWCC	6 cut(s)	307, 532, 742, 889, 1087, 1306
AvrII	CCTAGG	1 cut(s)	446
BaeGI	GKGCMC	2 cut(s)	89, 967
BalI	TGGCCA	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	964
BbvI	GCAGC	2 cut(s)	428, 883
BccI	CCATC	3 cut(s)	455, 614, 731
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	507
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	3 cut(s)	635, 860, 933
BcuI	ACTAGT	1 cut(s)	499
BfaI	CTAG	5 cut(s)	390, 408, 447, 500, 836
BfmI	CTRYAG	1 cut(s)	993
BisI	GCNGC	3 cut(s)	25, 417, 872
BlnI	CCTAGG	1 cut(s)	446
BlsI	GCNGC	3 cut(s)	26, 418, 873
Bme1390I	CCNGG	2 cut(s)	275, 507
Bme18I	GGWCC	6 cut(s)	307, 532, 742, 889, 1087, 1306
BmeT110I	CYCGRG	1 cut(s)	632
BmgT120I	GGNCC	7 cut(s)	307, 532, 692, 742, 889, 1087, 1306
BmiI	GGNNCC	4 cut(s)	42, 452, 966, 1088
BmrFI	CCNGG	2 cut(s)	275, 507
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	2 cut(s)	11, 339
BmuI	ACTGGG	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	860
BsaJI	CCNNGG	5 cut(s)	446, 621, 758, 802, 819
BsaXI	ACNNNNNCTCC	2 cut(s)	1003, 1033
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 56, 612, 1082, 1122, 1123
Bse1I	ACTGG	2 cut(s)	133, 1257
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	5 cut(s)	446, 621, 758, 802, 819
BseLI	CCNNNNNNNGG	6 cut(s)	31, 56, 612, 1082, 1122, 1123
BseMII	CTCAG	1 cut(s)	535
BseNI	ACTGG	2 cut(s)	133, 1257
BseRI	GAGGAG	1 cut(s)	1176
BseSI	GKGCMC	2 cut(s)	89, 967
BseXI	GCAGC	2 cut(s)	428, 883
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	4 cut(s)	60, 371, 693, 716
BshNI	GGYRCC	1 cut(s)	964
BsiHKCI	CYCGRG	1 cut(s)	632
BsiSI	CCGG	2 cut(s)	274, 713
BslFI	GGGAC	1 cut(s)	1100
BslI	CCNNNNNNNGG	6 cut(s)	31, 56, 612, 1082, 1122, 1123
BsmAI	GTCTC	3 cut(s)	635, 860, 933
BsmFI	GGGAC	1 cut(s)	1100
BsmI	GAATGC	2 cut(s)	753, 1105
BsnI	GGCC	4 cut(s)	60, 371, 693, 716
Bso31I	GGTCTC	1 cut(s)	860
BsoBI	CYCGRG	1 cut(s)	632
Bsp1286I	GDGCHC	2 cut(s)	89, 967
Bsp143I	GATC	2 cut(s)	586, 654
Bsp19I	CCATGG	3 cut(s)	621, 758, 819
BspACI	CCGC	2 cut(s)	25, 152
BspANI	GGCC	4 cut(s)	60, 371, 693, 716
BspCNI	CTCAG	1 cut(s)	534
BspLI	GGNNCC	4 cut(s)	42, 452, 966, 1088
BspMAI	CTGCAG	1 cut(s)	997
BspPI	GGATC	1 cut(s)	649
BspT107I	GGYRCC	1 cut(s)	964
BspTNI	GGTCTC	1 cut(s)	860
BsrI	ACTGG	2 cut(s)	133, 1257
BssECI	CCNNGG	5 cut(s)	446, 621, 758, 802, 819
BssMI	GATC	2 cut(s)	586, 654
BssT1I	CCWWGG	4 cut(s)	446, 621, 758, 819
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	3 cut(s)	709, 866, 1019
Bst6I	CTCTTC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	992
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	3 cut(s)	380, 428, 521
BstDSI	CCRYGG	3 cut(s)	621, 758, 819
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstKTI	GATC	2 cut(s)	589, 657
BstMAI	GTCTC	3 cut(s)	635, 860, 933
BstMBI	GATC	2 cut(s)	586, 654
BstMWI	GCNNNNNNNGC	2 cut(s)	807, 992
BstNI	CCWGG	1 cut(s)	507
BstSCI	CCNGG	2 cut(s)	273, 505
BstSFI	CTRYAG	1 cut(s)	993
BstSLI	GKGCMC	2 cut(s)	89, 967
BstV1I	GCAGC	2 cut(s)	428, 883
BstX2I	RGATCY	1 cut(s)	654
BstXI	CCANNNNNNTGG	2 cut(s)	461, 935
BstYI	RGATCY	1 cut(s)	654
BsuRI	GGCC	4 cut(s)	60, 371, 693, 716
BtgI	CCRYGG	3 cut(s)	621, 758, 819
BtsI	GCAGTG	3 cut(s)	418, 908, 990
BtsIMutI	CAGTG	5 cut(s)	418, 871, 908, 990, 1015
Cac8I	GCNNGC	1 cut(s)	328
Cfr13I	GGNCC	7 cut(s)	307, 532, 692, 742, 889, 1087, 1306
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	4 cut(s)	352, 405, 503, 1108
CviAII	CATG	5 cut(s)	622, 759, 820, 849, 1153
CviQI	GTAC	4 cut(s)	352, 405, 503, 1108
DdeI	CTNAG	3 cut(s)	380, 428, 521
DpnI	GATC	2 cut(s)	588, 656
DpnII	GATC	2 cut(s)	586, 654
EaeI	YGGCCR	2 cut(s)	369, 714
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	4 cut(s)	446, 621, 758, 819
Eco31I	GGTCTC	1 cut(s)	860
Eco32I	GATATC	1 cut(s)	240
Eco47I	GGWCC	6 cut(s)	307, 532, 742, 889, 1087, 1306
Eco57I	CTGAAG	2 cut(s)	585, 1071
Eco88I	CYCGRG	1 cut(s)	632
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	532
EcoRI	GAATTC	1 cut(s)	1027
EcoRII	CCWGG	1 cut(s)	505
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	4 cut(s)	446, 621, 758, 819
ErhI	CCWWGG	4 cut(s)	446, 621, 758, 819
FaeI	CATG	5 cut(s)	625, 762, 823, 852, 1156
FalI	AAGNNNNNCTT	6 cut(s)	583, 615, 799, 831, 965, 997
FaqI	GGGAC	1 cut(s)	1100
FatI	CATG	5 cut(s)	621, 758, 819, 848, 1152
FauI	CCCGC	1 cut(s)	159
FauNDI	CATATG	1 cut(s)	197
Fnu4HI	GCNGC	3 cut(s)	25, 417, 872
Fsp4HI	GCNGC	3 cut(s)	25, 417, 872
FspBI	CTAG	5 cut(s)	390, 408, 447, 500, 836
GluI	GCNGC	3 cut(s)	25, 417, 872
HaeIII	GGCC	4 cut(s)	60, 371, 693, 716
HapII	CCGG	2 cut(s)	274, 713
HgaI	GACGC	1 cut(s)	433
Hin1II	CATG	5 cut(s)	625, 762, 823, 852, 1156
HinfI	GANTC	6 cut(s)	278, 385, 482, 899, 1012, 1253
HpaII	CCGG	2 cut(s)	274, 713
Hpy166II	GTNNAC	1 cut(s)	1306
Hpy188I	TCNGA	5 cut(s)	524, 554, 806, 893, 1051
Hpy188III	TCNNGA	3 cut(s)	479, 613, 632
Hpy8I	GTNNAC	1 cut(s)	1306
HpyAV	CCTTC	8 cut(s)	104, 485, 550, 585, 911, 1046, 1179, 1199
HpyCH4III	ACNGT	3 cut(s)	709, 866, 1019
HpyCH4V	TGCA	8 cut(s)	261, 330, 359, 416, 753, 951, 995, 1103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	807, 992
HpyF3I	CTNAG	3 cut(s)	380, 428, 521
Hsp92II	CATG	5 cut(s)	625, 762, 823, 852, 1156
Kzo9I	GATC	2 cut(s)	586, 654
LmnI	GCTCC	1 cut(s)	456
Lsp1109I	GCAGC	2 cut(s)	428, 883
LweI	GCATC	2 cut(s)	11, 339
MaeI	CTAG	5 cut(s)	390, 408, 447, 500, 836
MaeIII	GTNAC	3 cut(s)	431, 464, 1013
MalI	GATC	2 cut(s)	588, 656
MboI	GATC	2 cut(s)	586, 654
MboII	GAAGA	3 cut(s)	374, 591, 1269
MflI	RGATCY	1 cut(s)	654
MhlI	GDGCHC	2 cut(s)	89, 967
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	7 cut(s)	373, 441, 556, 1027, 1235, 1248, 1285
MluNI	TGGCCA	1 cut(s)	371
MlyI	GAGTC	2 cut(s)	893, 1021
MmeI	TCCRAC	5 cut(s)	474, 885, 916, 979, 1004
Mox20I	TGGCCA	1 cut(s)	371
MroXI	GAANNNNTTC	1 cut(s)	1056
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	1 cut(s)	528
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	2 cut(s)	274, 713
MspR9I	CCNGG	2 cut(s)	275, 507
Mva1269I	GAATGC	2 cut(s)	753, 1105
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	807, 992
NciI	CCSGG	1 cut(s)	275
NcoI	CCATGG	3 cut(s)	621, 758, 819
NdeI	CATATG	1 cut(s)	197
NdeII	GATC	2 cut(s)	586, 654
NlaIII	CATG	5 cut(s)	625, 762, 823, 852, 1156
NlaIV	GGNNCC	4 cut(s)	42, 452, 966, 1088
NmuCI	GTSAC	1 cut(s)	1013
PaeR7I	CTCGAG	1 cut(s)	632
PcsI	WCGNNNNNNNCGW	1 cut(s)	287
PctI	GAATGC	2 cut(s)	753, 1105
PdmI	GAANNNNTTC	1 cut(s)	1056
PfeI	GAWTC	4 cut(s)	278, 385, 482, 1253
PflMI	CCANNNNNTGG	1 cut(s)	612
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	3 cut(s)	26, 418, 873
PleI	GAGTC	2 cut(s)	893, 1020
PpsI	GAGTC	2 cut(s)	893, 1020
PpuMI	RGGWCCY	1 cut(s)	532
Psp5II	RGGWCCY	1 cut(s)	532
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	4 cut(s)	42, 452, 966, 1088
PspPI	GGNCC	7 cut(s)	307, 532, 692, 742, 889, 1087, 1306
PspPPI	RGGWCCY	1 cut(s)	532
PstI	CTGCAG	1 cut(s)	997
PsuI	RGATCY	1 cut(s)	654
RsaI	GTAC	4 cut(s)	353, 406, 504, 1109
RsaNI	GTAC	4 cut(s)	352, 405, 503, 1108
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	3 cut(s)	25, 417, 872
Sau3AI	GATC	2 cut(s)	586, 654
Sau96I	GGNCC	7 cut(s)	307, 532, 692, 742, 889, 1087, 1306
SchI	GAGTC	2 cut(s)	893, 1021
ScrFI	CCNGG	2 cut(s)	275, 507
SduI	GDGCHC	2 cut(s)	89, 967
SfaNI	GCATC	2 cut(s)	11, 339
SfcI	CTRYAG	1 cut(s)	993
Sfr274I	CTCGAG	1 cut(s)	632
SinI	GGWCC	6 cut(s)	307, 532, 742, 889, 1087, 1306
SlaI	CTCGAG	1 cut(s)	632
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
SpeI	ACTAGT	1 cut(s)	499
Sse9I	AATT	7 cut(s)	373, 441, 556, 1027, 1235, 1248, 1285
SsiI	CCGC	2 cut(s)	25, 152
SspMI	CTAG	5 cut(s)	390, 408, 447, 500, 836
StyD4I	CCNGG	2 cut(s)	273, 505
StyI	CCWWGG	4 cut(s)	446, 621, 758, 819
TaaI	ACNGT	3 cut(s)	709, 866, 1019
TaqI	TCGA	3 cut(s)	171, 589, 633
TasI	AATT	7 cut(s)	373, 441, 556, 1027, 1235, 1248, 1285
TatI	WGTACW	2 cut(s)	351, 404
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	4 cut(s)	278, 385, 482, 1253
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	5 cut(s)	418, 871, 915, 997, 1022
TseFI	GTSAC	1 cut(s)	1013
TseI	GCWGC	2 cut(s)	416, 871
Tsp45I	GTSAC	1 cut(s)	1013
TspDTI	ATGAA	5 cut(s)	68, 86, 357, 1169, 1277
TspGWI	ACGGA	3 cut(s)	666, 911, 1050
TspRI	CASTG	5 cut(s)	418, 871, 915, 997, 1022
Van91I	CCANNNNNTGG	1 cut(s)	612
VpaK11BI	GGWCC	6 cut(s)	307, 532, 742, 889, 1087, 1306
XagI	CCTNNNNNAGG	1 cut(s)	54
XapI	RAATTY	2 cut(s)	556, 1027
XcmI	CCANNNNNNNNNTGG	2 cut(s)	932, 1079
XhoI	CTCGAG	1 cut(s)	632
XmaJI	CCTAGG	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	1056
XspI	CTAG	5 cut(s)	390, 408, 447, 500, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.