Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Forward (+)

66989591 .. 66992578

Gene Structure 2988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG480800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGAATATCGACAAGAGAGATGCCGCAGAGTGGTGCTGGTTCCTCTGCCATTTCAAGGCCACATAACCCCAATGCTTTATCTGGGCACTATCCTTCATTCCAAAGGCTTTCACATCACAATCGCTCATACCCAGTTCAACTTTCCCAACCCGCTGAACTACCCTCATTTCGACTTCTTAAAGTTGTACGATGGCATATGTGAGCAAAATATATCAGCCCACAACTTTATAGCCGTGATATCAGGTTTCAACACCAACTGCAAAGGCCATCTCCGGGATTCGTTGGCTAGGATAATGGAGAAAGTGGATCAACACAATAAGATTGCTTGCATCATCTATGATGAATATATGTACTTTGCAGAAGAGGTGGCCAATTATCTGAGGATTCCTAGTATCATATTGTCTACTAGCAGTGCAGCAAAGACGCTAAGTTACCTTGCATATCCTAGGCTCCAAAACGATGGTTACATTCCCTGTCAAGATTCTATGATGTTGGAACTAGTACCAGGACTTGAACCACTTAGATTTAAAGACCTAACCATCACATATTTCAGAAATTGGGATGACTTGCTACAACATATAGCGAAAGCCCTTGATCGAAGAAATTTCAATGGCTCTGACATTGGGCCTGTCAGCCTCCACATTAGGAATAGTGACAGTAACAACCCCATTGCTCATAAAGGCCTTGAGCTCCTCAATCTTGGCGTTCTCGGGGAGCTTAATCTTGGTCATGAAGCTACCGCTGTCTGTGCTAATCTGAAGCACTCGCTCTTCTTGAAGCTCAACAAGAACGTCTCCGTTCTCAAACACAGGAAGACCTGCCTTAAGAACGTGGACATTTCGGGTCTCTCTCCAATCGAGCCGGGAATTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

291

Amino Acids

33.07

Weight (kDa)

8.12

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	827
AccI	GTMKAC	1 cut(s)	404
AciI	CCGC	3 cut(s)	25, 152, 741
AclWI	GGATC	1 cut(s)	315
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	2 cut(s)	604, 867
AcuI	CTGAAG	1 cut(s)	779
AfaI	GTAC	3 cut(s)	188, 353, 504
AfiI	CCNNNNNNNGG	3 cut(s)	31, 56, 274
AflII	CTTAAG	1 cut(s)	824
AgsI	TTSAA	6 cut(s)	56, 139, 250, 515, 610, 778
AhlI	ACTAGT	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	4 cut(s)	691, 718, 737, 781
AluI	AGCT	4 cut(s)	691, 718, 737, 781
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	2 cut(s)	799, 851
AlwI	GGATC	1 cut(s)	315
Ama87I	CYCGRG	1 cut(s)	710
AoxI	GGCC	5 cut(s)	58, 265, 369, 626, 682
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	2 cut(s)	604, 867
AspA2I	CCTAGG	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	626
AsuC2I	CCSGG	2 cut(s)	275, 864
AvaI	CYCGRG	1 cut(s)	710
AvrII	CCTAGG	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	821
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	1 cut(s)	428
BccI	CCATC	4 cut(s)	185, 276, 455, 548
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	507
BcnI	CCSGG	2 cut(s)	275, 864
BcoDI	GTCTC	2 cut(s)	799, 851
BcuI	ACTAGT	1 cut(s)	499
BfaI	CTAG	5 cut(s)	288, 390, 408, 447, 500
BfrI	CTTAAG	1 cut(s)	824
BfuAI	ACCTGC	1 cut(s)	827
BisI	GCNGC	2 cut(s)	25, 417
BlnI	CCTAGG	1 cut(s)	446
BlsI	GCNGC	2 cut(s)	26, 418
Bme1390I	CCNGG	3 cut(s)	275, 507, 864
BmeT110I	CYCGRG	1 cut(s)	710
BmgT120I	GGNCC	1 cut(s)	626
BmiI	GGNNCC	2 cut(s)	42, 452
BmrFI	CCNGG	3 cut(s)	275, 507, 864
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	2 cut(s)	11, 339
BmuI	ACTGGG	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	821
BpuEI	CTTGAG	1 cut(s)	707
BpuMI	CCSGG	2 cut(s)	275, 864
BsaI	GGTCTC	1 cut(s)	851
BsaJI	CCNNGG	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 56, 274
Bse1I	ACTGG	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	669
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	3 cut(s)	31, 56, 274
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	683
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	428
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	5 cut(s)	60, 267, 371, 628, 684
BsiHKAI	GWGCWC	1 cut(s)	693
BsiHKCI	CYCGRG	1 cut(s)	710
BsiSI	CCGG	2 cut(s)	274, 863
BslI	CCNNNNNNNGG	3 cut(s)	31, 56, 274
BsmAI	GTCTC	2 cut(s)	799, 851
BsmBI	CGTCTC	1 cut(s)	799
BsnI	GGCC	5 cut(s)	60, 267, 371, 628, 684
Bso31I	GGTCTC	1 cut(s)	851
BsoBI	CYCGRG	1 cut(s)	710
Bsp1286I	GDGCHC	2 cut(s)	89, 693
Bsp143I	GATC	2 cut(s)	307, 595
BspACI	CCGC	3 cut(s)	25, 152, 741
BspANI	GGCC	5 cut(s)	60, 267, 371, 628, 684
BspCNI	CTCAG	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	2 cut(s)	42, 452
BspMI	ACCTGC	1 cut(s)	827
BspPI	GGATC	1 cut(s)	315
BspQI	GCTCTTC	1 cut(s)	776
BspTI	CTTAAG	1 cut(s)	824
BspTNI	GGTCTC	1 cut(s)	851
BsrDI	GCAATG	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	2 cut(s)	307, 595
BssT1I	CCWWGG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	2 cut(s)	357, 776
BstAFI	CTTAAG	1 cut(s)	824
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	3 cut(s)	380, 428, 521
BstF5I	GGATG	1 cut(s)	568
BstKTI	GATC	2 cut(s)	310, 598
BstMAI	GTCTC	2 cut(s)	799, 851
BstMBI	GATC	2 cut(s)	307, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	749
BstNI	CCWGG	1 cut(s)	507
BstSCI	CCNGG	3 cut(s)	273, 505, 862
BstSLI	GKGCMC	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	428
BstV2I	GAAGAC	1 cut(s)	821
BstXI	CCANNNNNNTGG	1 cut(s)	461
BsuRI	GGCC	5 cut(s)	60, 267, 371, 628, 684
BtsCI	GGATG	1 cut(s)	568
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	418, 871
BveI	ACCTGC	1 cut(s)	827
Cac8I	GCNNGC	1 cut(s)	328
CciI	TCATGA	1 cut(s)	730
Cfr13I	GGNCC	1 cut(s)	626
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	3 cut(s)	187, 352, 503
CviAII	CATG	1 cut(s)	731
CviQI	GTAC	3 cut(s)	187, 352, 503
DdeI	CTNAG	3 cut(s)	380, 428, 521
DpnI	GATC	2 cut(s)	309, 597
DpnII	GATC	2 cut(s)	307, 595
DraI	TTTAAA	1 cut(s)	529
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	357, 776
EarI	CTCTTC	2 cut(s)	357, 776
Ecl136II	GAGCTC	1 cut(s)	691
Eco130I	CCWWGG	1 cut(s)	446
Eco147I	AGGCCT	1 cut(s)	684
Eco24I	GRGCYC	1 cut(s)	693
Eco31I	GGTCTC	1 cut(s)	851
Eco32I	GATATC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	691
Eco57I	CTGAAG	1 cut(s)	779
Eco88I	CYCGRG	1 cut(s)	710
EcoICRI	GAGCTC	1 cut(s)	691
EcoRI	GAATTC	1 cut(s)	867
EcoRII	CCWGG	1 cut(s)	505
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	693
ErhI	CCWWGG	1 cut(s)	446
Esp3I	CGTCTC	1 cut(s)	799
FaeI	CATG	1 cut(s)	734
FatI	CATG	1 cut(s)	730
FauI	CCCGC	1 cut(s)	159
FauNDI	CATATG	1 cut(s)	197
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	2 cut(s)	25, 417
FokI	GGATG	1 cut(s)	575
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	2 cut(s)	25, 417
FspBI	CTAG	5 cut(s)	288, 390, 408, 447, 500
GluI	GCNGC	2 cut(s)	25, 417
HaeIII	GGCC	5 cut(s)	60, 267, 371, 628, 684
HapII	CCGG	2 cut(s)	274, 863
HgaI	GACGC	1 cut(s)	433
Hin1II	CATG	1 cut(s)	734
HinfI	GANTC	3 cut(s)	278, 385, 482
HpaII	CCGG	2 cut(s)	274, 863
Hpy166II	GTNNAC	2 cut(s)	405, 835
Hpy188I	TCNGA	4 cut(s)	381, 554, 619, 759
Hpy188III	TCNNGA	3 cut(s)	479, 731, 775
Hpy8I	GTNNAC	2 cut(s)	405, 835
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4IV	ACGT	2 cut(s)	792, 831
HpyCH4V	TGCA	5 cut(s)	261, 330, 359, 416, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	749
HpyF3I	CTNAG	3 cut(s)	380, 428, 521
HpySE526I	ACGT	2 cut(s)	792, 831
Hsp92II	CATG	1 cut(s)	734
Kzo9I	GATC	2 cut(s)	307, 595
LguI	GCTCTTC	1 cut(s)	776
LmnI	GCTCC	3 cut(s)	456, 696, 715
Lsp1109I	GCAGC	1 cut(s)	428
LweI	GCATC	2 cut(s)	11, 339
MaeI	CTAG	5 cut(s)	288, 390, 408, 447, 500
MaeII	ACGT	2 cut(s)	792, 831
MaeIII	GTNAC	4 cut(s)	431, 464, 653, 659
MalI	GATC	2 cut(s)	309, 597
MboI	GATC	2 cut(s)	307, 595
MboII	GAAGA	4 cut(s)	374, 612, 763, 826
MhlI	GDGCHC	2 cut(s)	89, 693
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	4 cut(s)	373, 556, 604, 867
MluNI	TGGCCA	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	6 cut(s)	54, 174, 358, 375, 647, 704
Mox20I	TGGCCA	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	4 cut(s)	179, 528, 720, 825
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	2 cut(s)	154, 743
MspCI	CTTAAG	1 cut(s)	824
MspI	CCGG	2 cut(s)	274, 863
MspR9I	CCNGG	3 cut(s)	275, 507, 864
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	1 cut(s)	749
NciI	CCSGG	2 cut(s)	275, 864
NdeI	CATATG	1 cut(s)	197
NdeII	GATC	2 cut(s)	307, 595
NlaIII	CATG	1 cut(s)	734
NlaIV	GGNNCC	2 cut(s)	42, 452
NmuCI	GTSAC	1 cut(s)	653
PagI	TCATGA	1 cut(s)	730
PceI	AGGCCT	1 cut(s)	684
PciSI	GCTCTTC	1 cut(s)	776
PfeI	GAWTC	3 cut(s)	278, 385, 482
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	2 cut(s)	26, 418
Psp124BI	GAGCTC	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	2 cut(s)	42, 452
PspPI	GGNCC	1 cut(s)	626
RsaI	GTAC	3 cut(s)	188, 353, 504
RsaNI	GTAC	3 cut(s)	187, 352, 503
SacI	GAGCTC	1 cut(s)	693
SapI	GCTCTTC	1 cut(s)	776
SaqAI	TTAA	4 cut(s)	179, 528, 720, 825
SatI	GCNGC	2 cut(s)	25, 417
Sau3AI	GATC	2 cut(s)	307, 595
Sau96I	GGNCC	1 cut(s)	626
ScrFI	CCNGG	3 cut(s)	275, 507, 864
SduI	GDGCHC	2 cut(s)	89, 693
SfaNI	GCATC	2 cut(s)	11, 339
SmlI	CTYRAG	2 cut(s)	686, 824
SmoI	CTYRAG	2 cut(s)	686, 824
SpeI	ACTAGT	1 cut(s)	499
Sse9I	AATT	4 cut(s)	373, 556, 604, 867
SseBI	AGGCCT	1 cut(s)	684
SsiI	CCGC	3 cut(s)	25, 152, 741
SspMI	CTAG	5 cut(s)	288, 390, 408, 447, 500
SstI	GAGCTC	1 cut(s)	693
StuI	AGGCCT	1 cut(s)	684
StyD4I	CCNGG	3 cut(s)	273, 505, 862
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	1 cut(s)	659
TaiI	ACGT	2 cut(s)	795, 834
TaqI	TCGA	4 cut(s)	10, 171, 598, 858
TasI	AATT	4 cut(s)	373, 556, 604, 867
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	3 cut(s)	278, 385, 482
Tru1I	TTAA	4 cut(s)	179, 528, 720, 825
Tru9I	TTAA	4 cut(s)	179, 528, 720, 825
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	653
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	653
TspDTI	ATGAA	3 cut(s)	86, 357, 747
TspGWI	ACGGA	1 cut(s)	787
TspRI	CASTG	1 cut(s)	418
Vha464I	CTTAAG	1 cut(s)	824
XapI	RAATTY	2 cut(s)	604, 867
XmaJI	CCTAGG	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	404
XspI	CTAG	5 cut(s)	288, 390, 408, 447, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.