Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Forward (+)

72660940 .. 72662444

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G041240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGAATATCAACAAGAGAGATGCCGCAGAGTGGTGCTGGTTCCTCTGCCCTTTCAAGGCCACATAACCCCAATGCTTCATCTGGGCACTATCCTTCATTCCAAAGGCTTTCACATCACAATCGCTCATACCCAGTTCAACTTTCCCAACCCGCTGAACTACCCTCATTTCGACTTTTTAGAGTTGTCCAATGGCATATGTGAGCAAAATATATCTGCCCACAACTTTATAGCCGTGATATCAGGTTTCAACACCAACTGCAAAGGACATCTCCGGGAATCGTTGGCTAGGATAATGGAGAAAGAGGACCAACACAATAAGATTGCTTGCATCATCTATGATGAATATAGGTACTTTGCAGAAGAGGTGGCCAATTATCTAAGGATTCCTAGTATCATATTATGTACTAGCAGTGCAGCAAAGACGCTAAGTTACCTCGCAATTCCTAGGCTCCAAAACGATGGTTACATTCCCCTTCAAAATTCTATGATGTTGGAACTAGTACCAGGACTTGAACCACTCAGATTTAAGGACCTAACCTTCACATATTTCAGAAATTTGGATGACTTGCTACAACTGATAGCAAAAGCCCTTGATCGAAGGTCATCTTCAGCCATCATCTGGAACACCATGGATTGTCTCGAGCAATCAACATTGACAAAGATCCAGCAGGAATACCAACTTCCGTTCTTGTTGAAAGAGGACCAGAGTTGCATTCCATGGCTTGACAAACAATCACACAACTCTGTCATCTATATAAGCCTCGGAAGCGCAGCTTCCATGGACAATAAAGACCTAGTTGAAATGGCATGGGGTCTCTCCAACAGTGAGCAGCCTTTCTTGTGGGTGGTCCGAACGGATTCCACAGCACTGCCAGAAGGTTTCCACGAAGCTTCTTGGCACACTGCAGTTGGAGGGTTTTGGAGTCACTGTGGTTGGAATTCAACCATTGAGAGTATCTCTGGAGGAGTTCCGTTGATATGCCAACCTTATTTTGGGGACCAGCGAGTGAATGCAAGGTACTTGACCCAAGTTTGGGGAGTAGGGTTAGAATGGGAGAATGACATGAACAGAGGAGAAATACAGGGAGCTATAAGAAGGCTTATGGTGGGTAAAGAAGGAGGGCTGATAAGGGAAAGAGCAAAAGAATTGAAGGAAAAAATTGAATCCAGTATGAAGCAGGGTGGTTCTTCCTACAATTCCTTGAATGATTTGGTGGACCTTATTTTATCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

412

Amino Acids

46.96

Weight (kDa)

5.73

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	67 - 371	1.7e-18	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	621
AciI	CCGC	2 cut(s)	25, 152
AclWI	GGATC	1 cut(s)	658
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	3 cut(s)	481, 556, 940
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	4 cut(s)	353, 406, 504, 1022
AfiI	CCNNNNNNNGG	6 cut(s)	31, 56, 621, 995, 1035, 1036
AhlI	ACTAGT	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	3 cut(s)	776, 893, 1091
AluI	AGCT	3 cut(s)	776, 893, 1091
Alw26I	GTCTC	2 cut(s)	644, 821
AlwI	GGATC	1 cut(s)	658
Ama87I	CYCGRG	1 cut(s)	641
AoxI	GGCC	2 cut(s)	58, 369
ApeKI	GCWGC	3 cut(s)	416, 773, 832
ApoI	RAATTY	3 cut(s)	481, 556, 940
Asp700I	GAANNNNTTC	1 cut(s)	859
AspA2I	CCTAGG	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	773
AspS9I	GGNCC	6 cut(s)	307, 532, 703, 850, 1000, 1219
AsuC2I	CCSGG	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	641
AvaII	GGWCC	6 cut(s)	307, 532, 703, 850, 1000, 1219
AvrII	CCTAGG	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	371
BbvI	GCAGC	3 cut(s)	428, 785, 844
BccI	CCATC	2 cut(s)	455, 623
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	507
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	644, 821
BcuI	ACTAGT	1 cut(s)	499
BfaI	CTAG	6 cut(s)	288, 390, 408, 447, 500, 797
BfmI	CTRYAG	1 cut(s)	906
BisI	GCNGC	4 cut(s)	25, 417, 774, 833
BlnI	CCTAGG	1 cut(s)	446
BlsI	GCNGC	4 cut(s)	26, 418, 775, 834
Bme1390I	CCNGG	2 cut(s)	275, 507
Bme18I	GGWCC	6 cut(s)	307, 532, 703, 850, 1000, 1219
BmeT110I	CYCGRG	1 cut(s)	641
BmgT120I	GGNCC	6 cut(s)	307, 532, 703, 850, 1000, 1219
BmiI	GGNNCC	3 cut(s)	42, 452, 1001
BmrFI	CCNGG	2 cut(s)	275, 507
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	2 cut(s)	11, 339
BmuI	ACTGGG	1 cut(s)	127
BplI	GAGNNNNNCTC	2 cut(s)	944, 976
BpmI	CTGGAG	1 cut(s)	984
BpuMI	CCSGG	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	821
BsaJI	CCNNGG	5 cut(s)	446, 630, 719, 763, 780
BsaXI	ACNNNNNCTCC	2 cut(s)	916, 946
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 56, 621, 995, 1035, 1036
Bse1I	ACTGG	2 cut(s)	133, 1170
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	5 cut(s)	446, 630, 719, 763, 780
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	6 cut(s)	31, 56, 621, 995, 1035, 1036
BseMII	CTCAG	1 cut(s)	535
BseNI	ACTGG	2 cut(s)	133, 1170
BseRI	GAGGAG	2 cut(s)	981, 1089
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	3 cut(s)	428, 785, 844
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	2 cut(s)	60, 371
BsiHKCI	CYCGRG	1 cut(s)	641
BsiSI	CCGG	1 cut(s)	274
BslFI	GGGAC	1 cut(s)	1013
BslI	CCNNNNNNNGG	6 cut(s)	31, 56, 621, 995, 1035, 1036
BsmAI	GTCTC	2 cut(s)	644, 821
BsmFI	GGGAC	1 cut(s)	1013
BsmI	GAATGC	2 cut(s)	714, 1018
BsnI	GGCC	2 cut(s)	60, 371
Bso31I	GGTCTC	1 cut(s)	821
BsoBI	CYCGRG	1 cut(s)	641
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	595, 663
Bsp19I	CCATGG	3 cut(s)	630, 719, 780
BspACI	CCGC	2 cut(s)	25, 152
BspANI	GGCC	2 cut(s)	60, 371
BspCNI	CTCAG	1 cut(s)	534
BspLI	GGNNCC	3 cut(s)	42, 452, 1001
BspMAI	CTGCAG	1 cut(s)	910
BspPI	GGATC	1 cut(s)	658
BspTNI	GGTCTC	1 cut(s)	821
BsrI	ACTGG	2 cut(s)	133, 1170
BssECI	CCNNGG	5 cut(s)	446, 630, 719, 763, 780
BssMI	GATC	2 cut(s)	595, 663
BssT1I	CCWWGG	4 cut(s)	446, 630, 719, 780
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	2 cut(s)	827, 932
Bst6I	CTCTTC	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	3 cut(s)	380, 428, 521
BstDSI	CCRYGG	3 cut(s)	630, 719, 780
BstF5I	GGATG	1 cut(s)	568
BstHHI	GCGC	1 cut(s)	773
BstKTI	GATC	2 cut(s)	598, 666
BstMAI	GTCTC	2 cut(s)	644, 821
BstMBI	GATC	2 cut(s)	595, 663
BstMWI	GCNNNNNNNGC	1 cut(s)	768
BstNI	CCWGG	1 cut(s)	507
BstSCI	CCNGG	2 cut(s)	273, 505
BstSFI	CTRYAG	1 cut(s)	906
BstSLI	GKGCMC	1 cut(s)	89
BstV1I	GCAGC	3 cut(s)	428, 785, 844
BstX2I	RGATCY	1 cut(s)	663
BstXI	CCANNNNNNTGG	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	663
BsuRI	GGCC	2 cut(s)	60, 371
BtgI	CCRYGG	3 cut(s)	630, 719, 780
BtsCI	GGATG	1 cut(s)	568
BtsI	GCAGTG	3 cut(s)	418, 869, 903
BtsIMutI	CAGTG	5 cut(s)	418, 832, 869, 903, 928
Cac8I	GCNNGC	1 cut(s)	328
CfoI	GCGC	1 cut(s)	773
Cfr13I	GGNCC	6 cut(s)	307, 532, 703, 850, 1000, 1219
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	4 cut(s)	352, 405, 503, 1021
CviAII	CATG	5 cut(s)	631, 720, 781, 810, 1066
CviQI	GTAC	4 cut(s)	352, 405, 503, 1021
DdeI	CTNAG	3 cut(s)	380, 428, 521
DpnI	GATC	2 cut(s)	597, 665
DpnII	GATC	2 cut(s)	595, 663
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	4 cut(s)	446, 630, 719, 780
Eco31I	GGTCTC	1 cut(s)	821
Eco32I	GATATC	1 cut(s)	240
Eco47I	GGWCC	6 cut(s)	307, 532, 703, 850, 1000, 1219
Eco57I	CTGAAG	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	641
EcoO109I	RGGNCCY	1 cut(s)	532
EcoRI	GAATTC	1 cut(s)	940
EcoRII	CCWGG	1 cut(s)	505
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	4 cut(s)	446, 630, 719, 780
ErhI	CCWWGG	4 cut(s)	446, 630, 719, 780
FaeI	CATG	5 cut(s)	634, 723, 784, 813, 1069
FalI	AAGNNNNNCTT	4 cut(s)	592, 624, 760, 792
FaqI	GGGAC	1 cut(s)	1013
FatI	CATG	5 cut(s)	630, 719, 780, 809, 1065
FauI	CCCGC	1 cut(s)	159
FauNDI	CATATG	1 cut(s)	197
Fnu4HI	GCNGC	4 cut(s)	25, 417, 774, 833
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	4 cut(s)	25, 417, 774, 833
FspBI	CTAG	6 cut(s)	288, 390, 408, 447, 500, 797
GlaI	GCGC	1 cut(s)	772
GluI	GCNGC	4 cut(s)	25, 417, 774, 833
GsuI	CTGGAG	1 cut(s)	984
HaeIII	GGCC	2 cut(s)	60, 371
HapII	CCGG	1 cut(s)	274
HgaI	GACGC	1 cut(s)	433
HhaI	GCGC	1 cut(s)	773
Hin1II	CATG	5 cut(s)	634, 723, 784, 813, 1069
Hin6I	GCGC	1 cut(s)	771
HinP1I	GCGC	1 cut(s)	771
HindIII	AAGCTT	1 cut(s)	891
HinfI	GANTC	5 cut(s)	278, 385, 860, 925, 1166
HpaII	CCGG	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	1219
Hpy188I	TCNGA	4 cut(s)	524, 554, 767, 854
Hpy188III	TCNNGA	3 cut(s)	622, 641, 963
Hpy8I	GTNNAC	1 cut(s)	1219
HpyAV	CCTTC	8 cut(s)	104, 485, 550, 594, 872, 1092, 1112, 1147
HpyCH4III	ACNGT	2 cut(s)	827, 932
HpyCH4V	TGCA	7 cut(s)	261, 330, 359, 416, 714, 908, 1016
HpyF10VI	GCNNNNNNNGC	1 cut(s)	768
HpyF3I	CTNAG	3 cut(s)	380, 428, 521
Hsp92II	CATG	5 cut(s)	634, 723, 784, 813, 1069
HspAI	GCGC	1 cut(s)	771
Kzo9I	GATC	2 cut(s)	595, 663
LmnI	GCTCC	2 cut(s)	456, 1088
Lsp1109I	GCAGC	3 cut(s)	428, 785, 844
LweI	GCATC	2 cut(s)	11, 339
MaeI	CTAG	6 cut(s)	288, 390, 408, 447, 500, 797
MaeIII	GTNAC	3 cut(s)	431, 464, 926
MalI	GATC	2 cut(s)	597, 665
MboI	GATC	2 cut(s)	595, 663
MboII	GAAGA	3 cut(s)	374, 600, 1182
MflI	RGATCY	1 cut(s)	663
MhlI	GDGCHC	1 cut(s)	89
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	8 cut(s)	373, 441, 481, 556, 940, 1148, 1161, 1198
MluNI	TGGCCA	1 cut(s)	371
MlyI	GAGTC	1 cut(s)	934
MmeI	TCCRAC	4 cut(s)	474, 846, 892, 917
Mox20I	TGGCCA	1 cut(s)	371
MroXI	GAANNNNTTC	1 cut(s)	859
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	1 cut(s)	528
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	2 cut(s)	275, 507
Mva1269I	GAATGC	2 cut(s)	714, 1018
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	1 cut(s)	768
NciI	CCSGG	1 cut(s)	275
NcoI	CCATGG	3 cut(s)	630, 719, 780
NdeI	CATATG	1 cut(s)	197
NdeII	GATC	2 cut(s)	595, 663
NlaIII	CATG	5 cut(s)	634, 723, 784, 813, 1069
NlaIV	GGNNCC	3 cut(s)	42, 452, 1001
NmuCI	GTSAC	1 cut(s)	926
PaeR7I	CTCGAG	1 cut(s)	641
PctI	GAATGC	2 cut(s)	714, 1018
PdmI	GAANNNNTTC	1 cut(s)	859
PfeI	GAWTC	4 cut(s)	278, 385, 860, 1166
PflMI	CCANNNNNTGG	1 cut(s)	621
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	4 cut(s)	26, 418, 775, 834
PleI	GAGTC	1 cut(s)	933
PpsI	GAGTC	1 cut(s)	933
PpuMI	RGGWCCY	1 cut(s)	532
Psp5II	RGGWCCY	1 cut(s)	532
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	3 cut(s)	42, 452, 1001
PspPI	GGNCC	6 cut(s)	307, 532, 703, 850, 1000, 1219
PspPPI	RGGWCCY	1 cut(s)	532
PstI	CTGCAG	1 cut(s)	910
PsuI	RGATCY	1 cut(s)	663
RsaI	GTAC	4 cut(s)	353, 406, 504, 1022
RsaNI	GTAC	4 cut(s)	352, 405, 503, 1021
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	4 cut(s)	25, 417, 774, 833
Sau3AI	GATC	2 cut(s)	595, 663
Sau96I	GGNCC	6 cut(s)	307, 532, 703, 850, 1000, 1219
SchI	GAGTC	1 cut(s)	934
ScrFI	CCNGG	2 cut(s)	275, 507
SduI	GDGCHC	1 cut(s)	89
SfaNI	GCATC	2 cut(s)	11, 339
SfcI	CTRYAG	1 cut(s)	906
Sfr274I	CTCGAG	1 cut(s)	641
SinI	GGWCC	6 cut(s)	307, 532, 703, 850, 1000, 1219
SlaI	CTCGAG	1 cut(s)	641
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
SpeI	ACTAGT	1 cut(s)	499
Sse9I	AATT	8 cut(s)	373, 441, 481, 556, 940, 1148, 1161, 1198
SsiI	CCGC	2 cut(s)	25, 152
SspMI	CTAG	6 cut(s)	288, 390, 408, 447, 500, 797
StyD4I	CCNGG	2 cut(s)	273, 505
StyI	CCWWGG	4 cut(s)	446, 630, 719, 780
TaaI	ACNGT	2 cut(s)	827, 932
TaqI	TCGA	3 cut(s)	171, 598, 642
TasI	AATT	8 cut(s)	373, 441, 481, 556, 940, 1148, 1161, 1198
TatI	WGTACW	1 cut(s)	404
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	4 cut(s)	278, 385, 860, 1166
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	5 cut(s)	418, 832, 876, 910, 935
TseFI	GTSAC	1 cut(s)	926
TseI	GCWGC	3 cut(s)	416, 773, 832
Tsp45I	GTSAC	1 cut(s)	926
TspDTI	ATGAA	5 cut(s)	68, 86, 357, 1082, 1190
TspGWI	ACGGA	3 cut(s)	675, 872, 963
TspRI	CASTG	5 cut(s)	418, 832, 876, 910, 935
Van91I	CCANNNNNTGG	1 cut(s)	621
VpaK11BI	GGWCC	6 cut(s)	307, 532, 703, 850, 1000, 1219
XapI	RAATTY	3 cut(s)	481, 556, 940
XcmI	CCANNNNNNNNNTGG	1 cut(s)	992
XhoI	CTCGAG	1 cut(s)	641
XmaJI	CCTAGG	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	859
XspI	CTAG	6 cut(s)	288, 390, 408, 447, 500, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.