Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Reverse (-)

51713983 .. 51714975

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0381400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGATGATGATGATGAAACTATCTCTACTTTCTATATTGGTTTTCTCTCTGTCACATTTCCATGTGGTGCAATCAGGCAATGCGCCGGCTCCTGCTCCTGCTCCCAAACTCGCAAACCCGCCTCCGCCCTCGTCGCCGCCTCCTCCCGCGACTTCTCCGGCACTTACTCCGACCGCTTCTCCTTCGGCATCCCCTCCGACTCACTCTCCTTCGCCTGCCGCTTCTCCAAAATCCTCTCCACCAACTTCGACTCCTCCGGCCGCCGCGCCGACCGTCTCACCGGCAACTCCTCCTCCGGCGTCACCCGTTTCTCCAGCGGCTAGCCCGTCCGCAAATGGGTCGTCGCCAGTTCAAGCCCCGGCTACGCCGCCGCCGACTGTGGCCTCTCCCGTTGCGACTCCGGTGAGCGCTCCGAAGTCAAGCCCATCTGGGGCTCCGCCGGTTGCTGAGACTCCCGAGACTGCGGCAACCCCATCTTCGTCGAGCATTCCTTCGTCTGAAACCCCGTCGGAGTCGCCGGCGATGTTCCCGTCGAGCAGTAGCCCACCAAGTCCGACGCCGGCGGGTCTGTCGCCTGAGGGCGCGGCGGCGAGTCCCGCTAGTGATGATACGTCGGGTTCGGAGCCCAAGTATGGAGTTGGGTTCATTTTGAGTGGGCTCTCTATCTGGGTCGCTTTGGCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

228

Amino Acids

21.9

Weight (kDa)

5.42

Isoelectric Point (pI)

106.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	149, 266, 584
AcoI	YGGCCR	1 cut(s)	258
AcyI	GRCGYC	2 cut(s)	299, 557
AfeI	AGCGCT	1 cut(s)	409
AfiI	CCNNNNNNNGG	3 cut(s)	336, 430, 632
AgsI	TTSAA	1 cut(s)	353
Alw26I	GTCTC	3 cut(s)	280, 443, 452
Ama87I	CYCGRG	1 cut(s)	455
Aor51HI	AGCGCT	1 cut(s)	409
AoxI	GGCC	2 cut(s)	258, 381
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AspLEI	GCGC	4 cut(s)	85, 268, 410, 584
AsuC2I	CCSGG	1 cut(s)	359
AsuHPI	GGTGA	3 cut(s)	270, 294, 415
AsuNHI	GCTAGC	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	455
AxyI	CCTNAGG	1 cut(s)	576
BanII	GRGCYC	3 cut(s)	436, 627, 660
BccI	CCATC	2 cut(s)	433, 481
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	3 cut(s)	280, 443, 452
BfaI	CTAG	2 cut(s)	321, 600
BfoI	RGCGCY	1 cut(s)	411
Bme1390I	CCNGG	1 cut(s)	359
BmeT110I	CYCGRG	1 cut(s)	455
BmiI	GGNNCC	3 cut(s)	90, 435, 624
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	197
BmtI	GCTAGC	1 cut(s)	324
BpmI	CTGGAG	1 cut(s)	297
BpuMI	CCSGG	1 cut(s)	359
BsaHI	GRCGYC	2 cut(s)	299, 557
BsaJI	CCNNGG	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	3 cut(s)	336, 430, 632
Bse118I	RCCGGY	5 cut(s)	85, 280, 439, 517, 559
Bse1I	ACTGG	1 cut(s)	347
Bse21I	CCTNAGG	1 cut(s)	576
Bse3DI	GCAATG	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	1 cut(s)	188
BseLI	CCNNNNNNNGG	3 cut(s)	336, 430, 632
BseMI	GCAATG	1 cut(s)	85
BseMII	CTCAG	2 cut(s)	438, 567
BseNI	ACTGG	1 cut(s)	347
BseRI	GAGGAG	4 cut(s)	132, 243, 279, 282
BseX3I	CGGCCG	1 cut(s)	258
Bsh1236I	CGCG	3 cut(s)	149, 266, 584
Bsh1285I	CGRYCG	3 cut(s)	174, 261, 273
BshFI	GGCC	2 cut(s)	260, 383
BsiEI	CGRYCG	3 cut(s)	174, 261, 273
BsiHKCI	CYCGRG	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	3 cut(s)	336, 430, 632
BsmAI	GTCTC	3 cut(s)	280, 443, 452
BsmBI	CGTCTC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	579
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	2 cut(s)	260, 383
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	3 cut(s)	436, 627, 660
BspANI	GGCC	2 cut(s)	260, 383
BspCNI	CTCAG	2 cut(s)	439, 568
BspFNI	CGCG	3 cut(s)	149, 266, 584
BspLI	GGNNCC	3 cut(s)	90, 435, 624
BspOI	GCTAGC	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	85
BsrFI	RCCGGY	5 cut(s)	85, 280, 439, 517, 559
BsrI	ACTGG	1 cut(s)	347
BssAI	RCCGGY	5 cut(s)	85, 280, 439, 517, 559
BssECI	CCNNGG	1 cut(s)	357
BssNI	GRCGYC	2 cut(s)	299, 557
Bst4CI	ACNGT	2 cut(s)	274, 379
BstACI	GRCGYC	2 cut(s)	299, 557
BstC8I	GCNNGC	5 cut(s)	87, 216, 322, 519, 561
BstDEI	CTNAG	2 cut(s)	447, 576
BstF5I	GGATG	1 cut(s)	188
BstFNI	CGCG	3 cut(s)	149, 266, 584
BstH2I	RGCGCY	1 cut(s)	411
BstHHI	GCGC	4 cut(s)	85, 268, 410, 584
BstMAI	GTCTC	3 cut(s)	280, 443, 452
BstMCI	CGRYCG	3 cut(s)	174, 261, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 596
BstSCI	CCNGG	1 cut(s)	357
BstUI	CGCG	3 cut(s)	149, 266, 584
BstZI	CGGCCG	1 cut(s)	258
Bsu36I	CCTNAGG	1 cut(s)	576
BsuRI	GGCC	2 cut(s)	260, 383
BtgZI	GCGATG	1 cut(s)	536
BtsCI	GGATG	1 cut(s)	188
Cac8I	GCNNGC	5 cut(s)	87, 216, 322, 519, 561
CfoI	GCGC	4 cut(s)	85, 268, 410, 584
Cfr10I	RCCGGY	5 cut(s)	85, 280, 439, 517, 559
CseI	GACGC	2 cut(s)	288, 565
CviAII	CATG	1 cut(s)	62
DdeI	CTNAG	2 cut(s)	447, 576
EaeI	YGGCCR	1 cut(s)	258
EagI	CGGCCG	1 cut(s)	258
EciI	GGCGGA	2 cut(s)	114, 426
EclXI	CGGCCG	1 cut(s)	258
Eco24I	GRGCYC	3 cut(s)	436, 627, 660
Eco47III	AGCGCT	1 cut(s)	409
Eco52I	CGGCCG	1 cut(s)	258
Eco81I	CCTNAGG	1 cut(s)	576
Eco88I	CYCGRG	1 cut(s)	455
EcoT38I	GRGCYC	3 cut(s)	436, 627, 660
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	1 cut(s)	65
FaiI	YATR	3 cut(s)	35, 63, 633
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	1 cut(s)	61
FauI	CCCGC	4 cut(s)	126, 154, 556, 604
FokI	GGATG	1 cut(s)	175
FriOI	GRGCYC	3 cut(s)	436, 627, 660
FspBI	CTAG	2 cut(s)	321, 600
GlaI	GCGC	4 cut(s)	84, 267, 409, 583
GsuI	CTGGAG	1 cut(s)	297
HaeII	RGCGCY	1 cut(s)	411
HaeIII	GGCC	2 cut(s)	260, 383
HgaI	GACGC	2 cut(s)	288, 565
HhaI	GCGC	4 cut(s)	85, 268, 410, 584
Hin1I	GRCGYC	2 cut(s)	299, 557
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	4 cut(s)	83, 266, 408, 582
HinP1I	GCGC	4 cut(s)	83, 266, 408, 582
HinfI	GANTC	6 cut(s)	199, 250, 397, 451, 512, 592
HphI	GGTGA	3 cut(s)	270, 294, 415
Hpy188I	TCNGA	7 cut(s)	171, 198, 414, 499, 511, 555, 622
Hpy188III	TCNNGA	1 cut(s)	455
Hpy99I	CGWCG	7 cut(s)	136, 346, 484, 511, 535, 559, 616
HpyAV	CCTTC	3 cut(s)	192, 219, 501
HpyCH4III	ACNGT	2 cut(s)	274, 379
HpyCH4IV	ACGT	1 cut(s)	611
HpyCH4V	TGCA	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 596
HpyF3I	CTNAG	2 cut(s)	447, 576
HpySE526I	ACGT	1 cut(s)	611
Hsp92I	GRCGYC	2 cut(s)	299, 557
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	4 cut(s)	83, 266, 408, 582
KroI	GCCGGC	3 cut(s)	85, 517, 559
KroNI	GCCGGC	3 cut(s)	87, 519, 561
LmnI	GCTCC	6 cut(s)	94, 100, 106, 415, 439, 622
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	2 cut(s)	321, 600
MaeII	ACGT	1 cut(s)	611
MaeIII	GTNAC	2 cut(s)	51, 300
MboII	GAAGA	1 cut(s)	468
MhlI	GDGCHC	3 cut(s)	436, 627, 660
MlyI	GAGTC	6 cut(s)	193, 244, 391, 445, 521, 601
MmeI	TCCRAC	4 cut(s)	194, 221, 489, 578
MreI	CGCCGGCG	2 cut(s)	517, 559
MroNI	GCCGGC	3 cut(s)	85, 517, 559
MslI	CAYNNNNRTG	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	486
MvnI	CGCG	3 cut(s)	149, 266, 584
MwoI	GCNNNNNNNGC	2 cut(s)	133, 596
NaeI	GCCGGC	3 cut(s)	87, 519, 561
NciI	CCSGG	1 cut(s)	359
NgoMIV	GCCGGC	3 cut(s)	85, 517, 559
NheI	GCTAGC	1 cut(s)	320
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	3 cut(s)	90, 435, 624
NmuCI	GTSAC	2 cut(s)	51, 300
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PctI	GAATGC	1 cut(s)	486
PdiI	GCCGGC	3 cut(s)	87, 519, 561
PleI	GAGTC	6 cut(s)	193, 244, 391, 445, 520, 600
PpsI	GAGTC	6 cut(s)	193, 244, 391, 445, 520, 600
PspN4I	GGNNCC	3 cut(s)	90, 435, 624
RseI	CAYNNNNRTG	1 cut(s)	60
SchI	GAGTC	6 cut(s)	193, 244, 391, 445, 521, 601
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	3 cut(s)	436, 627, 660
SetI	ASST	1 cut(s)	614
SfaNI	GCATC	1 cut(s)	197
SgrAI	CRCCGGYG	2 cut(s)	517, 559
SmiMI	CAYNNNNRTG	1 cut(s)	60
SspMI	CTAG	2 cut(s)	321, 600
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	274, 379
TaiI	ACGT	1 cut(s)	614
TaqI	TCGA	3 cut(s)	248, 482, 533
TseFI	GTSAC	2 cut(s)	51, 300
Tsp45I	GTSAC	2 cut(s)	51, 300
TspDTI	ATGAA	2 cut(s)	29, 634
XspI	CTAG	2 cut(s)	321, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.