Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Reverse (-)

52618131 .. 52619264

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G026410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTACTTCTCTGAAGCTGCTGCTAATTATAATATTCCAAGCATCATCCTCCGTACTACCAGAGCAGCCAACTTTCATGCTCGATCTACTGTCGTAGAATTTCATTCAAAGGGCCACATTCCCTTCCCAGAGTCTATGTCATCGGAGCCGGTGCCCCAACTTCATCCCCTCAGATTCAAGGATCTGCCCATCTCACCCTGGGACACGTTAGAAAACTTCTTAAAACTAGTAGTTAAGTCATATGATGTTGGGAGATCTTCGGCCATCATTTGTAATACCATAGACTGCCTCGACCAATCATCACTAGCACGGATCCAAAAACATTGCCAAGTACCGATCTTCTGCATAGGCCCCCTTCACAAAATCACAACAGCGGCCTCTAGTAGTTTACTTGAAGAGGACACAAGTTGCATTGAGTGGCTTGACAAGCAATCTCACAAGTCAGTTATCTATGTCAGTTTGGGGAGTATAGCATCCATTGGTGAGAAAGAACTGGCAGAAATGGCTTGGGGATTAGCCAACAGCAAGCAACCTTTTTTGTGGGTGATCAGACCTGGCTCCATTACCGGCTCAGATTGGATTGAGCTATTGCCTCAAGAGTTTAGAGAAGCTATTGGAGAAAGAGGTTTCATAGTGAAATGGGCACCCCAAAGGGAAGTTTTGGCTCATGGTGCTGTGGGCGCGTTTTGGACCCATTGTGGCTGGAATTCAACTCTTGAAAGCATATCTGAAGGGGTTCCGATGATTTGCAAACCATGTTTTAGTGATCAGAAGGTGCATGCGAGTTATGTTAGCAAAGTATGGAGACTAGGTTTAGAATTGGAGGATGAGTTTGAGAGAGGAGAGATAGAGAGAGCTGTTAGGAAACTCATGGTAAATAGTGATGGGGAAGAAATAAGGGCGAGGGCCAAGGATATGAAAGAGAAAATACAAGTTTCTATGAGCAAGGGTGGATCTAACTACAAAAGAAAGAGTGAACCTGTTGAATTCATTATGGCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

334

Amino Acids

37.56

Weight (kDa)

6.38

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	143 - 293	1.2e-27	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	30
AccB1I	GGYRCC	2 cut(s)	151, 643
AccII	CGCG	1 cut(s)	683
AciI	CCGC	1 cut(s)	374
AclWI	GGATC	4 cut(s)	189, 307, 320, 961
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	3 cut(s)	98, 706, 986
AcuI	CTGAAG	2 cut(s)	33, 750
AfaI	GTAC	3 cut(s)	5, 55, 333
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	6 cut(s)	108, 178, 395, 711, 719, 986
AhlI	ACTAGT	1 cut(s)	226
AjnI	CCWGG	2 cut(s)	197, 553
AluBI	AGCT	4 cut(s)	17, 586, 611, 857
AluI	AGCT	4 cut(s)	17, 586, 611, 857
Alw26I	GTCTC	1 cut(s)	799
AlwI	GGATC	4 cut(s)	189, 307, 320, 961
AoxI	GGCC	5 cut(s)	112, 261, 349, 375, 906
ApeKI	GCWGC	3 cut(s)	17, 20, 65
ApoI	RAATTY	3 cut(s)	98, 706, 986
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	1 cut(s)	683
AspS9I	GGNCC	4 cut(s)	112, 350, 690, 906
AsuHPI	GGTGA	3 cut(s)	186, 494, 556
AvaII	GGWCC	1 cut(s)	690
BaeGI	GKGCMC	2 cut(s)	156, 646
BamHI	GGATCC	1 cut(s)	312
BanI	GGYRCC	2 cut(s)	151, 643
BbvI	GCAGC	3 cut(s)	4, 7, 77
BccI	CCATC	3 cut(s)	197, 272, 878
BciT130I	CCWGG	2 cut(s)	199, 555
BclI	TGATCA	2 cut(s)	546, 766
BcoDI	GTCTC	1 cut(s)	799
BcuI	ACTAGT	1 cut(s)	226
BfaI	CTAG	4 cut(s)	227, 305, 381, 809
BglII	AGATCT	1 cut(s)	254
BisI	GCNGC	4 cut(s)	18, 21, 66, 375
BlsI	GCNGC	4 cut(s)	19, 22, 67, 376
Bme1390I	CCNGG	2 cut(s)	199, 555
Bme18I	GGWCC	1 cut(s)	690
BmgT120I	GGNCC	4 cut(s)	112, 350, 690, 906
BmiI	GGNNCC	8 cut(s)	147, 153, 314, 352, 559, 645, 692, 738
BmrFI	CCNGG	2 cut(s)	199, 555
BmsI	GCATC	2 cut(s)	51, 482
BpuEI	CTTGAG	1 cut(s)	579
BsaJI	CCNNGG	3 cut(s)	197, 198, 909
BsaXI	ACNNNNNCTCC	4 cut(s)	796, 815, 826, 845
Bse118I	RCCGGY	2 cut(s)	148, 566
Bse1I	ACTGG	1 cut(s)	498
Bse3DI	GCAATG	1 cut(s)	322
BseBI	CCWGG	2 cut(s)	199, 555
BseDI	CCNNGG	3 cut(s)	197, 198, 909
BseGI	GGATG	4 cut(s)	45, 163, 473, 832
BseMI	GCAATG	1 cut(s)	322
BseMII	CTCAG	2 cut(s)	184, 585
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	1 cut(s)	855
BseSI	GKGCMC	2 cut(s)	156, 646
BseXI	GCAGC	3 cut(s)	4, 7, 77
Bsh1236I	CGCG	1 cut(s)	683
BshFI	GGCC	5 cut(s)	114, 263, 351, 377, 908
BshNI	GGYRCC	2 cut(s)	151, 643
BsiSI	CCGG	2 cut(s)	149, 567
BslFI	GGGAC	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	799
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	998
BsnI	GGCC	5 cut(s)	114, 263, 351, 377, 908
Bsp1286I	GDGCHC	2 cut(s)	156, 646
Bsp143I	GATC	8 cut(s)	83, 181, 254, 312, 336, 546, 766, 953
BspACI	CCGC	1 cut(s)	374
BspANI	GGCC	5 cut(s)	114, 263, 351, 377, 908
BspCNI	CTCAG	2 cut(s)	183, 584
BspFNI	CGCG	1 cut(s)	683
BspLI	GGNNCC	8 cut(s)	147, 153, 314, 352, 559, 645, 692, 738
BspPI	GGATC	4 cut(s)	189, 307, 320, 961
BspT107I	GGYRCC	2 cut(s)	151, 643
BsrDI	GCAATG	1 cut(s)	322
BsrFI	RCCGGY	2 cut(s)	148, 566
BsrI	ACTGG	1 cut(s)	498
BssAI	RCCGGY	2 cut(s)	148, 566
BssECI	CCNNGG	3 cut(s)	197, 198, 909
BssMI	GATC	8 cut(s)	83, 181, 254, 312, 336, 546, 766, 953
BssT1I	CCWWGG	1 cut(s)	909
Bst2UI	CCWGG	2 cut(s)	199, 555
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	527, 780
BstDEI	CTNAG	2 cut(s)	170, 571
BstF5I	GGATG	4 cut(s)	45, 163, 473, 832
BstFNI	CGCG	1 cut(s)	683
BstHHI	GCGC	1 cut(s)	683
BstKTI	GATC	8 cut(s)	86, 184, 257, 315, 339, 549, 769, 956
BstMAI	GTCTC	1 cut(s)	799
BstMBI	GATC	8 cut(s)	83, 181, 254, 312, 336, 546, 766, 953
BstMWI	GCNNNNNNNGC	4 cut(s)	427, 503, 671, 680
BstNI	CCWGG	2 cut(s)	199, 555
BstNSI	RCATGY	1 cut(s)	782
BstSCI	CCNGG	2 cut(s)	197, 553
BstSLI	GKGCMC	2 cut(s)	156, 646
BstUI	CGCG	1 cut(s)	683
BstV1I	GCAGC	3 cut(s)	4, 7, 77
BstX2I	RGATCY	4 cut(s)	181, 254, 312, 953
BstYI	RGATCY	4 cut(s)	181, 254, 312, 953
BsuRI	GGCC	5 cut(s)	114, 263, 351, 377, 908
BtsCI	GGATG	4 cut(s)	45, 163, 473, 832
Cac8I	GCNNGC	2 cut(s)	527, 780
CfoI	GCGC	1 cut(s)	683
Cfr10I	RCCGGY	2 cut(s)	148, 566
Cfr13I	GGNCC	4 cut(s)	112, 350, 690, 906
Csp6I	GTAC	3 cut(s)	4, 54, 332
CviAII	CATG	5 cut(s)	77, 668, 756, 779, 871
CviQI	GTAC	3 cut(s)	4, 54, 332
DdeI	CTNAG	2 cut(s)	170, 571
DpnI	GATC	8 cut(s)	85, 183, 256, 314, 338, 548, 768, 955
DpnII	GATC	8 cut(s)	83, 181, 254, 312, 336, 546, 766, 953
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	909
Eco47I	GGWCC	1 cut(s)	690
Eco57I	CTGAAG	2 cut(s)	33, 750
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRI	GAATTC	2 cut(s)	706, 986
EcoRII	CCWGG	2 cut(s)	197, 553
EcoT14I	CCWWGG	1 cut(s)	909
ErhI	CCWWGG	1 cut(s)	909
FaeI	CATG	5 cut(s)	80, 671, 759, 782, 874
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	5 cut(s)	76, 667, 755, 778, 870
FauNDI	CATATG	1 cut(s)	241
FbaI	TGATCA	2 cut(s)	546, 766
Fnu4HI	GCNGC	4 cut(s)	18, 21, 66, 375
FokI	GGATG	4 cut(s)	32, 150, 460, 839
Fsp4HI	GCNGC	4 cut(s)	18, 21, 66, 375
FspBI	CTAG	4 cut(s)	227, 305, 381, 809
GlaI	GCGC	1 cut(s)	682
GluI	GCNGC	4 cut(s)	18, 21, 66, 375
HaeIII	GGCC	5 cut(s)	114, 263, 351, 377, 908
HapII	CCGG	2 cut(s)	149, 567
HhaI	GCGC	1 cut(s)	683
Hin1II	CATG	5 cut(s)	80, 671, 759, 782, 874
Hin6I	GCGC	1 cut(s)	681
HinP1I	GCGC	1 cut(s)	681
HinfI	GANTC	2 cut(s)	131, 174
HpaII	CCGG	2 cut(s)	149, 567
HphI	GGTGA	3 cut(s)	186, 494, 556
Hpy166II	GTNNAC	2 cut(s)	389, 977
Hpy188I	TCNGA	8 cut(s)	13, 145, 173, 551, 574, 730, 741, 771
Hpy188III	TCNNGA	2 cut(s)	596, 716
Hpy8I	GTNNAC	2 cut(s)	389, 977
HpyAV	CCTTC	4 cut(s)	133, 365, 725, 766
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	4 cut(s)	345, 411, 750, 778
HpyF10VI	GCNNNNNNNGC	4 cut(s)	427, 503, 671, 680
HpyF3I	CTNAG	2 cut(s)	170, 571
HpySE526I	ACGT	1 cut(s)	206
Hsp92II	CATG	5 cut(s)	80, 671, 759, 782, 874
HspAI	GCGC	1 cut(s)	681
Ksp22I	TGATCA	2 cut(s)	546, 766
Kzo9I	GATC	8 cut(s)	83, 181, 254, 312, 336, 546, 766, 953
LmnI	GCTCC	2 cut(s)	145, 563
Lsp1109I	GCAGC	3 cut(s)	4, 7, 77
LweI	GCATC	2 cut(s)	51, 482
MaeI	CTAG	4 cut(s)	227, 305, 381, 809
MaeII	ACGT	1 cut(s)	206
MalI	GATC	8 cut(s)	85, 183, 256, 314, 338, 548, 768, 955
MboI	GATC	8 cut(s)	83, 181, 254, 312, 336, 546, 766, 953
MboII	GAAGA	4 cut(s)	249, 331, 407, 902
MflI	RGATCY	4 cut(s)	181, 254, 312, 953
MhlI	GDGCHC	2 cut(s)	156, 646
MluCI	AATT	5 cut(s)	25, 98, 706, 818, 986
MlyI	GAGTC	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	2 cut(s)	221, 234
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	2 cut(s)	149, 567
MspR9I	CCNGG	2 cut(s)	199, 555
Mva1269I	GAATGC	1 cut(s)	998
MvaI	CCWGG	2 cut(s)	199, 555
MvnI	CGCG	1 cut(s)	683
MwoI	GCNNNNNNNGC	4 cut(s)	427, 503, 671, 680
NdeI	CATATG	1 cut(s)	241
NdeII	GATC	8 cut(s)	83, 181, 254, 312, 336, 546, 766, 953
NlaIII	CATG	5 cut(s)	80, 671, 759, 782, 874
NlaIV	GGNNCC	8 cut(s)	147, 153, 314, 352, 559, 645, 692, 738
NspI	RCATGY	1 cut(s)	782
PaeI	GCATGC	1 cut(s)	782
PasI	CCCWGGG	1 cut(s)	198
PctI	GAATGC	1 cut(s)	998
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	1 cut(s)	174
PkrI	GCNGC	4 cut(s)	19, 22, 67, 376
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PsiI	TTATAA	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	197, 553
PspGI	CCWGG	2 cut(s)	197, 553
PspN4I	GGNNCC	8 cut(s)	147, 153, 314, 352, 559, 645, 692, 738
PspPI	GGNCC	4 cut(s)	112, 350, 690, 906
PsuI	RGATCY	4 cut(s)	181, 254, 312, 953
RsaI	GTAC	3 cut(s)	5, 55, 333
RsaNI	GTAC	3 cut(s)	4, 54, 332
SaqAI	TTAA	2 cut(s)	221, 234
SatI	GCNGC	4 cut(s)	18, 21, 66, 375
Sau3AI	GATC	8 cut(s)	83, 181, 254, 312, 336, 546, 766, 953
Sau96I	GGNCC	4 cut(s)	112, 350, 690, 906
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	199, 555
SduI	GDGCHC	2 cut(s)	156, 646
SfaNI	GCATC	2 cut(s)	51, 482
SinI	GGWCC	1 cut(s)	690
SmlI	CTYRAG	1 cut(s)	594
SmoI	CTYRAG	1 cut(s)	594
SpeI	ACTAGT	1 cut(s)	226
SphI	GCATGC	1 cut(s)	782
Sse9I	AATT	5 cut(s)	25, 98, 706, 818, 986
SsiI	CCGC	1 cut(s)	374
SspI	AATATT	1 cut(s)	34
SspMI	CTAG	4 cut(s)	227, 305, 381, 809
StyD4I	CCNGG	2 cut(s)	197, 553
StyI	CCWWGG	1 cut(s)	909
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	2 cut(s)	82, 291
TasI	AATT	5 cut(s)	25, 98, 706, 818, 986
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	2 cut(s)	221, 234
Tru9I	TTAA	2 cut(s)	221, 234
TseI	GCWGC	3 cut(s)	17, 20, 65
TspDTI	ATGAA	6 cut(s)	65, 92, 152, 619, 932, 979
TspGWI	ACGGA	2 cut(s)	41, 325
VpaK11BI	GGWCC	1 cut(s)	690
XapI	RAATTY	3 cut(s)	98, 706, 986
XceI	RCATGY	1 cut(s)	782
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	4 cut(s)	227, 305, 381, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.