Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000714

Physical Location & Seq

Genomic Coordinates Forward (+)

73282569 .. 73284494

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG458600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGAATATCGACAAGAGAGATGCCGCAGAGTGGTGCTGGTTCCTCTGCCATTTCAAGGCCACATAACCCCAATGCTTTATCTGGGCACTATCCTTCATTCCAAAGGCTTTCACATCACAATCGCTCATACCCAGTTCAACTTTCCCAACCCGCTGAACTACCCTCATTTCGACTTCTTAAAGTTGTACGATGGCATATGTGAGCAAAATATATCAGCCCACAACTTTATAGCCGTGATATCAGGTTTCAACACCAACTGCAAAGGCCATCTCCGGGATTCGTTGGCTAGGATAATGGAGAAAGTGGATCAACACAATAAGATTGCTTGCATCATCTATGATGAATATATGTACTTTGCAGAAGAGGTGGCCAATTATCTGAGGATTCCTAGTATCATATTGTCTACTAGCAGTGCAGCAAAGACGCTAAGTTACCTTGCATATCCTAGGCTCCAAAACGATGGTTACATTCCCTGTCAAGATTCTATGATGTTGGAACTAGTACCAGGACTTGAACCACTTAGATTTAAAGACCTAACCATCACATATTTCAGAAATTGGGATGACTTGCTACAACATATAGCGAAAGCCCTTGATCGAAGGTCATCTTCAGCCATCATCTGGAACTCCATGGATTGCCTTGAGCAATCAACATTGAAAAAGATCCAGCAGGAATACCAACTTCCGTTGTTCCCCATTGGCCCTCTCAACAAAACTGTTCCGGCCATATCCATCAGCTTATTGAAAGAGGACCAGAGTTGCATTCCATGGCTTGACAAACAATCACACAACTCTGTCATCTACATAAGCCTTGGAAGCGCAGCTTCCATGGACAATAAAGACCTAGTTGAGATGGCATGGGGTCTCTCCAACAGCGAGCAGCCTTTCTTGTGGGTGGTCCGAATGGACTCCACAGAACTGCCAGAAGGTTTCCAAGAAGCTGTTGGAGACAGGGGTTGCATAGTAAAATGGGCACCCCAAAAGCAAGTCTTGGCACACACTGCAGTTGGAGGGTTTTGGAGTCACTGTGGTTGGAATTCAACCATTGAGAGTATCTCTGAAGGAGTTCCGTTAATATGCCAACCATATTATGGGGACCAGCGAGTGAATGCAAGGTACTTGACCCAAGTTTGGGGAGTAGGGTTAGAGTGGGAGAGTGAGATGAACAGAGGAGAAATAGAGGGAGCTATAAGAAGGCTTATGGTGGGTAAAGAAGGAGAACTGATAAGGCAAAGAGCAAAAGATTTGAAGGAGAAAATTGAATCCAGTATGAAGCAGGGTGGTTCTTCCTACAATTCCATGAATGATTTGGTGGACCTTATTTTGTCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

444

Amino Acids

50.63

Weight (kDa)

5.87

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	78 - 404	1.1e-31	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26480 AT3G46650 AT3G46660 AT3G46670 AT3G46680 AT3G46690 AT3G46700 AT3G46720 AT5G05860 AT5G05870 AT5G37950 AT5G37950 AT5G38010 AT5G38040 AT5G59580 AT5G59590
fragaria_vesca	FvH4_3g37270 FvH4_3g37280 FvH4_3g37280 FvH4_3g37310
malus_domestica	MD00G1075200.v1.1 MD03G1081900.v1.1 MD03G1082100.v1.1 MD03G1082200.v1.1 MD03G1082400.v1.1 MD03G1082500.v1.1 MD11G1090200.v1.1 MD11G1090300.v1.1 MD11G1090500.v1.1
prunus_persica	Prupe.6G007700_v2.0.a1 Prupe.6G007700_v2.0.a1 Prupe.6G007800_v2.0.a1 Prupe.6G008000_v2.0.a1 Prupe.6G008200_v2.0.a1 Prupe.6G008300_v2.0.a1 Prupe.6G008400_v2.0.a1 Prupe.6G008600_v2.0.a1 Prupe.6G008700_v2.0.a1
pyrus_communis	pycom03g06530 pycom03g06540 pycom03g06550 pycom03g06570 pycom11g07520
rosa_chinensis	RchiOBHm_Chr4g0431001 RchiOBHm_Chr5g0067011 RchiOBHm_Chr5g0067091
rosa_laevigata	RLG00000035904 RLG00000035909 RLG00000035911
rosa_multiflora	Rmu_sc0000151.1_g000012 Rmu_sc0000151.1_g000013 Rmu_sc0006583.1_g000015
rosa_roxburghii	Rroxscaffold_1G00013980 Rroxscaffold_1G00014100
rosa_rugosa	Rorug05G0380800 Rorug05G0381400 Rorug05G0381600 Rorug05G0381700 Rorug05G0381700
rosa_samantha	Rh5AG440700 Rh5AG441400 Rh5BG457900 Rh5BG458600 Rh5BG458700 Rh5CG480800 Rh5CG480900 Rh5DG472900 Rh5DG473400 Rh5DG473600
rosa_wichuraiana	Rw4G026410 Rw5G041180 Rw5G041230 Rw5G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	973
AccB7I	CCANNNNNTGG	2 cut(s)	621, 1091
AccI	GTMKAC	1 cut(s)	404
AciI	CCGC	2 cut(s)	25, 152
AclWI	GGATC	2 cut(s)	315, 658
AcoI	YGGCCR	2 cut(s)	369, 723
AcsI	RAATTY	1 cut(s)	1036
AcuI	CTGAAG	2 cut(s)	594, 1080
AfaI	GTAC	4 cut(s)	188, 353, 504, 1118
AfiI	CCNNNNNNNGG	7 cut(s)	31, 56, 274, 621, 1091, 1131, 1132
AgsI	TTSAA	9 cut(s)	56, 139, 250, 515, 658, 745, 1041, 1249, 1262
AhlI	ACTAGT	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	4 cut(s)	738, 824, 941, 1187
AluI	AGCT	4 cut(s)	738, 824, 941, 1187
Alw26I	GTCTC	2 cut(s)	869, 942
AlwI	GGATC	2 cut(s)	315, 658
AoxI	GGCC	5 cut(s)	58, 265, 369, 700, 723
ApeKI	GCWGC	3 cut(s)	416, 821, 880
ApoI	RAATTY	1 cut(s)	1036
Asp700I	GAANNNNTTC	1 cut(s)	1065
AspA2I	CCTAGG	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	821
AspS9I	GGNCC	5 cut(s)	701, 751, 898, 1096, 1315
AsuC2I	CCSGG	1 cut(s)	275
AvaII	GGWCC	4 cut(s)	751, 898, 1096, 1315
AvrII	CCTAGG	1 cut(s)	446
BaeGI	GKGCMC	2 cut(s)	89, 976
BalI	TGGCCA	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	973
BbvI	GCAGC	3 cut(s)	428, 833, 892
BccI	CCATC	7 cut(s)	185, 276, 455, 548, 623, 740, 847
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	507
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	869, 942
BcuI	ACTAGT	1 cut(s)	499
BfaI	CTAG	6 cut(s)	288, 390, 408, 447, 500, 845
BfmI	CTRYAG	1 cut(s)	1002
BisI	GCNGC	4 cut(s)	25, 417, 822, 881
BlnI	CCTAGG	1 cut(s)	446
BlsI	GCNGC	4 cut(s)	26, 418, 823, 882
Bme1390I	CCNGG	2 cut(s)	275, 507
Bme18I	GGWCC	4 cut(s)	751, 898, 1096, 1315
BmgT120I	GGNCC	5 cut(s)	701, 751, 898, 1096, 1315
BmiI	GGNNCC	4 cut(s)	42, 452, 975, 1097
BmrFI	CCNGG	2 cut(s)	275, 507
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	2 cut(s)	11, 339
BmuI	ACTGGG	1 cut(s)	127
BplI	GAGNNNNNCTC	2 cut(s)	1040, 1072
BpuEI	CTTGAG	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	869
BsaJI	CCNNGG	5 cut(s)	446, 630, 767, 811, 828
BsaXI	ACNNNNNCTCC	2 cut(s)	1012, 1042
Bsc4I	CCNNNNNNNGG	7 cut(s)	31, 56, 274, 621, 1091, 1131, 1132
Bse1I	ACTGG	2 cut(s)	133, 1266
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	5 cut(s)	446, 630, 767, 811, 828
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	7 cut(s)	31, 56, 274, 621, 1091, 1131, 1132
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	2 cut(s)	133, 1266
BseRI	GAGGAG	1 cut(s)	1185
BseSI	GKGCMC	2 cut(s)	89, 976
BseXI	GCAGC	3 cut(s)	428, 833, 892
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	5 cut(s)	60, 267, 371, 702, 725
BshNI	GGYRCC	1 cut(s)	973
BsiSI	CCGG	2 cut(s)	274, 722
BslFI	GGGAC	1 cut(s)	1109
BslI	CCNNNNNNNGG	7 cut(s)	31, 56, 274, 621, 1091, 1131, 1132
BsmAI	GTCTC	2 cut(s)	869, 942
BsmFI	GGGAC	1 cut(s)	1109
BsmI	GAATGC	2 cut(s)	762, 1114
BsnI	GGCC	5 cut(s)	60, 267, 371, 702, 725
Bso31I	GGTCTC	1 cut(s)	869
Bsp1286I	GDGCHC	2 cut(s)	89, 976
Bsp143I	GATC	3 cut(s)	307, 595, 663
Bsp19I	CCATGG	3 cut(s)	630, 767, 828
BspACI	CCGC	2 cut(s)	25, 152
BspANI	GGCC	5 cut(s)	60, 267, 371, 702, 725
BspCNI	CTCAG	1 cut(s)	372
BspLI	GGNNCC	4 cut(s)	42, 452, 975, 1097
BspMAI	CTGCAG	1 cut(s)	1006
BspPI	GGATC	2 cut(s)	315, 658
BspT107I	GGYRCC	1 cut(s)	973
BspTNI	GGTCTC	1 cut(s)	869
BsrI	ACTGG	2 cut(s)	133, 1266
BssECI	CCNNGG	5 cut(s)	446, 630, 767, 811, 828
BssMI	GATC	3 cut(s)	307, 595, 663
BssT1I	CCWWGG	5 cut(s)	446, 630, 767, 811, 828
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	2 cut(s)	718, 1028
Bst6I	CTCTTC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	1001
BstC8I	GCNNGC	2 cut(s)	328, 878
BstDEI	CTNAG	3 cut(s)	380, 428, 521
BstDSI	CCRYGG	3 cut(s)	630, 767, 828
BstF5I	GGATG	1 cut(s)	568
BstHHI	GCGC	1 cut(s)	821
BstKTI	GATC	3 cut(s)	310, 598, 666
BstMAI	GTCTC	2 cut(s)	869, 942
BstMBI	GATC	3 cut(s)	307, 595, 663
BstMWI	GCNNNNNNNGC	2 cut(s)	816, 1001
BstNI	CCWGG	1 cut(s)	507
BstSCI	CCNGG	2 cut(s)	273, 505
BstSFI	CTRYAG	1 cut(s)	1002
BstSLI	GKGCMC	2 cut(s)	89, 976
BstV1I	GCAGC	3 cut(s)	428, 833, 892
BstX2I	RGATCY	1 cut(s)	663
BstXI	CCANNNNNNTGG	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	663
BsuRI	GGCC	5 cut(s)	60, 267, 371, 702, 725
BtgI	CCRYGG	3 cut(s)	630, 767, 828
BtsCI	GGATG	1 cut(s)	568
BtsI	GCAGTG	2 cut(s)	418, 999
BtsIMutI	CAGTG	3 cut(s)	418, 999, 1024
Cac8I	GCNNGC	2 cut(s)	328, 878
CfoI	GCGC	1 cut(s)	821
Cfr13I	GGNCC	5 cut(s)	701, 751, 898, 1096, 1315
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	4 cut(s)	187, 352, 503, 1117
CviAII	CATG	5 cut(s)	631, 768, 829, 858, 1300
CviQI	GTAC	4 cut(s)	187, 352, 503, 1117
DdeI	CTNAG	3 cut(s)	380, 428, 521
DpnI	GATC	3 cut(s)	309, 597, 665
DpnII	GATC	3 cut(s)	307, 595, 663
DraI	TTTAAA	1 cut(s)	529
EaeI	YGGCCR	2 cut(s)	369, 723
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	5 cut(s)	446, 630, 767, 811, 828
Eco31I	GGTCTC	1 cut(s)	869
Eco32I	GATATC	1 cut(s)	240
Eco47I	GGWCC	4 cut(s)	751, 898, 1096, 1315
Eco57I	CTGAAG	2 cut(s)	594, 1080
EcoRI	GAATTC	1 cut(s)	1036
EcoRII	CCWGG	1 cut(s)	505
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	5 cut(s)	446, 630, 767, 811, 828
ErhI	CCWWGG	5 cut(s)	446, 630, 767, 811, 828
FaeI	CATG	5 cut(s)	634, 771, 832, 861, 1303
FalI	AAGNNNNNCTT	6 cut(s)	592, 624, 808, 840, 974, 1006
FaqI	GGGAC	1 cut(s)	1109
FatI	CATG	5 cut(s)	630, 767, 828, 857, 1299
FauI	CCCGC	1 cut(s)	159
FauNDI	CATATG	1 cut(s)	197
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	4 cut(s)	25, 417, 822, 881
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	4 cut(s)	25, 417, 822, 881
FspBI	CTAG	6 cut(s)	288, 390, 408, 447, 500, 845
GlaI	GCGC	1 cut(s)	820
GluI	GCNGC	4 cut(s)	25, 417, 822, 881
HaeIII	GGCC	5 cut(s)	60, 267, 371, 702, 725
HapII	CCGG	2 cut(s)	274, 722
HgaI	GACGC	1 cut(s)	433
HhaI	GCGC	1 cut(s)	821
Hin1II	CATG	5 cut(s)	634, 771, 832, 861, 1303
Hin6I	GCGC	1 cut(s)	819
HinP1I	GCGC	1 cut(s)	819
HinfI	GANTC	6 cut(s)	278, 385, 482, 908, 1021, 1262
HpaII	CCGG	2 cut(s)	274, 722
Hpy166II	GTNNAC	2 cut(s)	405, 1315
Hpy188I	TCNGA	4 cut(s)	381, 554, 902, 1060
Hpy188III	TCNNGA	2 cut(s)	479, 622
Hpy8I	GTNNAC	2 cut(s)	405, 1315
HpyAV	CCTTC	7 cut(s)	104, 594, 920, 1055, 1188, 1208, 1243
HpyCH4III	ACNGT	2 cut(s)	718, 1028
HpyCH4V	TGCA	9 cut(s)	261, 330, 359, 416, 440, 762, 960, 1004, 1112
HpyF10VI	GCNNNNNNNGC	2 cut(s)	816, 1001
HpyF3I	CTNAG	3 cut(s)	380, 428, 521
Hsp92II	CATG	5 cut(s)	634, 771, 832, 861, 1303
HspAI	GCGC	1 cut(s)	819
Kzo9I	GATC	3 cut(s)	307, 595, 663
LmnI	GCTCC	2 cut(s)	456, 1184
Lsp1109I	GCAGC	3 cut(s)	428, 833, 892
LweI	GCATC	2 cut(s)	11, 339
MaeI	CTAG	6 cut(s)	288, 390, 408, 447, 500, 845
MaeIII	GTNAC	3 cut(s)	431, 464, 1022
MalI	GATC	3 cut(s)	309, 597, 665
MboI	GATC	3 cut(s)	307, 595, 663
MboII	GAAGA	3 cut(s)	374, 600, 1278
MflI	RGATCY	1 cut(s)	663
MhlI	GDGCHC	2 cut(s)	89, 976
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	5 cut(s)	373, 556, 1036, 1257, 1294
MluNI	TGGCCA	1 cut(s)	371
MlyI	GAGTC	2 cut(s)	902, 1030
MmeI	TCCRAC	5 cut(s)	474, 894, 925, 988, 1013
MnlI	CCTC	9 cut(s)	54, 174, 358, 375, 714, 742, 1004, 1163, 1174
Mox20I	TGGCCA	1 cut(s)	371
MroXI	GAANNNNTTC	1 cut(s)	1065
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	3 cut(s)	179, 528, 1073
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	2 cut(s)	274, 722
MspR9I	CCNGG	2 cut(s)	275, 507
Mva1269I	GAATGC	2 cut(s)	762, 1114
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	816, 1001
NciI	CCSGG	1 cut(s)	275
NcoI	CCATGG	3 cut(s)	630, 767, 828
NdeI	CATATG	1 cut(s)	197
NdeII	GATC	3 cut(s)	307, 595, 663
NlaIII	CATG	5 cut(s)	634, 771, 832, 861, 1303
NlaIV	GGNNCC	4 cut(s)	42, 452, 975, 1097
NmuCI	GTSAC	1 cut(s)	1022
PctI	GAATGC	2 cut(s)	762, 1114
PdmI	GAANNNNTTC	1 cut(s)	1065
PfeI	GAWTC	4 cut(s)	278, 385, 482, 1262
PflMI	CCANNNNNTGG	2 cut(s)	621, 1091
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	4 cut(s)	26, 418, 823, 882
PleI	GAGTC	2 cut(s)	902, 1029
PpsI	GAGTC	2 cut(s)	902, 1029
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	4 cut(s)	42, 452, 975, 1097
PspPI	GGNCC	5 cut(s)	701, 751, 898, 1096, 1315
PstI	CTGCAG	1 cut(s)	1006
PsuI	RGATCY	1 cut(s)	663
RsaI	GTAC	4 cut(s)	188, 353, 504, 1118
RsaNI	GTAC	4 cut(s)	187, 352, 503, 1117
SaqAI	TTAA	3 cut(s)	179, 528, 1073
SatI	GCNGC	4 cut(s)	25, 417, 822, 881
Sau3AI	GATC	3 cut(s)	307, 595, 663
Sau96I	GGNCC	5 cut(s)	701, 751, 898, 1096, 1315
SchI	GAGTC	2 cut(s)	902, 1030
ScrFI	CCNGG	2 cut(s)	275, 507
SduI	GDGCHC	2 cut(s)	89, 976
SfaNI	GCATC	2 cut(s)	11, 339
SfcI	CTRYAG	1 cut(s)	1002
SinI	GGWCC	4 cut(s)	751, 898, 1096, 1315
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
SpeI	ACTAGT	1 cut(s)	499
Sse9I	AATT	5 cut(s)	373, 556, 1036, 1257, 1294
SsiI	CCGC	2 cut(s)	25, 152
SspMI	CTAG	6 cut(s)	288, 390, 408, 447, 500, 845
StyD4I	CCNGG	2 cut(s)	273, 505
StyI	CCWWGG	5 cut(s)	446, 630, 767, 811, 828
TaaI	ACNGT	2 cut(s)	718, 1028
TaqI	TCGA	3 cut(s)	10, 171, 598
TasI	AATT	5 cut(s)	373, 556, 1036, 1257, 1294
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	4 cut(s)	278, 385, 482, 1262
Tru1I	TTAA	3 cut(s)	179, 528, 1073
Tru9I	TTAA	3 cut(s)	179, 528, 1073
TscAI	CASTG	3 cut(s)	418, 1006, 1031
TseFI	GTSAC	1 cut(s)	1022
TseI	GCWGC	3 cut(s)	416, 821, 880
Tsp45I	GTSAC	1 cut(s)	1022
TspDTI	ATGAA	5 cut(s)	86, 357, 1178, 1286, 1316
TspGWI	ACGGA	2 cut(s)	675, 1059
TspRI	CASTG	3 cut(s)	418, 1006, 1031
Van91I	CCANNNNNTGG	2 cut(s)	621, 1091
VpaK11BI	GGWCC	4 cut(s)	751, 898, 1096, 1315
XapI	RAATTY	1 cut(s)	1036
XcmI	CCANNNNNNNNNTGG	3 cut(s)	941, 1088, 1306
XmaJI	CCTAGG	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	404
XmnI	GAANNNNTTC	1 cut(s)	1065
XspI	CTAG	6 cut(s)	288, 390, 408, 447, 500, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.