AT5G65380

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
26122937 .. 26126560
3624 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G65380.1

Sequence Viewer

Length: 1461 bp
ATGAGGGGAGGTGATGGAGAAGAAGGATCGGAGTCAAGAGTTGCACTGTTGAAAAGTCCTCACACGGCGGAGGAAGACGGTGAAGGATTGAAGGATAGAATTTTGGTTGAGACAAAAAAGCTATGGCAAATAGTTGGTCCGGCCATATTCAGTCGAGTAACGACATATTCGATGCTTGTAATCACTCAAGCTTTCGCTGGTCATCTCGGCGATCTTGAACTCGCCGCCATATCCATCGTTAATAACGTCACCGTTGGCTTCAACTTTGGCCTCTTGCTTGGAATGGCGAGTGCGTTGGAAACGCTGTGTGGACAAGCGTTTGGAGCGAAGAAATATCATATGTTGGGAGTTTATATGCAGCGTTCTTGGATTGTTCTCTTCTTTTGCTGTGTCTTGTTATTACCAACTTATATTTTCACTACTCCGGTTCTTAAATTTCTTGGTCAACCGGACGATATCGCTGAGCTGTCCGGTGTTGTCGCCATTTGGGTCATACCGCTTCATTTCGCCTTCACTTTGTCTTTTCCCCTTCAACGTTTCCTTCAGTGCCAGCTCAAAAACCGAGTGACTGCGTATGCGGCAGCGGTTGCATTGGTGGTTCATATTTTAGTGTGTTGGTTGTTCGTGGACGGGCTTAAACTAGGAGTCGTGGGGACTGTAGCTACGATTAGTATCTCGTGGTGGGTCAATGTTCTTATTCTGTTAGTTTACTCTACTTGTGGTGGTTGTCCGCTTACTTGGACCGGCTTATCCTCTGAAGCCTTAACCGGACTTTGGGAATTCCTTAAACTCTCTGCTTCTTCAGGCGTCATGCTCTGTTTGGAGAATTGGTATTATCGGATTTTGATTATAATGACTGGGAATCTTCAAAATGCTCGAATCGCCGTTGACTCCTTGTCCATATGCATGGCGATAAATGGTTGGGAGATGATGATACCTCTCGCTTTCTTCGCCGGAACCGGTGTCCGTGTGGCGAACGAATTAGGAGCTGGTAATGGTAAAGGAGCAAGATTTGCGACGATTGTATCGGTAACACAATCGTTGATAATCGGATTGTTTTTTTGGGTGCTAATAATGCTTCTCCATAACCAAATCGCATGGATCTTCTCTTCGAGTGTAGCCGTCTTAGACGCCGTCAATAAACTCTCACTTCTGCTAGCTTTCACCGTTCTTCTTAACAGCGTTCAACCGGTTCTTTCCGGTGTGGCGGTTGGATCGGGTTGGCAATCGTACGTGGCATATATAAACTTGGGATGTTACTATTGCATTGGTGTTCCACTTGGGTTTCTCATGGGCTGGGGTTTTAAACTCGGTGTCATGGGAATTTGGGGTGGTATGATTTTTGGAGGAACCGCTGTTCAAACCATGATCTTAAGTTTTATCACAATGAGATGTGACTGGGAAAAAGAGGCGCAGAAAGCAAGTGCTCGTATTAACAAATGGTCCAACACAATAAAATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

486

Amino Acids

52.97

Weight (kDa)

8.2

Isoelectric Point (pI)

22.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 47 - 207 2.4e-32 MatE
MatE PF01554 269 - 430 3.4e-24 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10420 AT5G44050 AT5G65380
fragaria_vesca FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36170 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_7g30730 FvH4_7g30730
malus_domestica MD01G1032800.v1.1 MD08G1190900.v1.1 MD08G1191000.v1.1 MD15G1378200.v1.1 MD15G1378900.v1.1 MD15G1379100.v1.1
prunus_persica Prupe.1G524800_v2.0.a1 Prupe.1G525000_v2.0.a1 Prupe.1G525200_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.6G195500_v2.0.a1
pyrus_communis pycom01g06450 pycom08g16390 pycom15g33900 pycom15g33930 pycom15g33950
rosa_chinensis RchiOBHm_Chr2g0112071 RchiOBHm_Chr7g0237941 RchiOBHm_Chr7g0237951 RchiOBHm_Chr7g0237971 RchiOBHm_Chr7g0238021
rosa_laevigata RLG00000000946 RLG00000000947 RLG00000000949 RLG00000017947
rosa_multiflora Rmu_co8087868.1_g000001 Rmu_co8407183.1_g000001 Rmu_co8459217.1_g000001 Rmu_sc0001339.1_g000020 Rmu_sc0002041.1_g000021 Rmu_sc0002586.1_g000009 Rmu_sc0002877.1_g000026 Rmu_sc0002877.1_g000032
rosa_roxburghii Rroxscaffold_2G00131800 Rroxscaffold_3G00223450 Rroxscaffold_3G00223470 Rroxscaffold_3G00223480
rosa_rugosa Rorug02G0178300 Rorug07G0309600 Rorug07G0309700.1 Rorug07G0309800.1 Rorug07G0309900.1 Rorug07G0310000 Rorug07G0310100
rosa_samantha Rh2AG230300 Rh2BG243500 Rh2DG238200 Rh7AG464600 Rh7AG464700 Rh7AG464900 Rh7BG435300 Rh7BG435600 Rh7CG482800 Rh7CG483100 Rh7CG483500 Rh7DG451500 Rh7DG451700 Rh7DG451800
rosa_wichuraiana Rw2G017840 Rw2G017890 Rw7G038490 Rw7G038500 Rw7G038510 Rw7G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 851
AciI CCGC 8 cut(s) 68, 225, 497, 578, 584, 731, 1208, 1353
AclI AACGTT 1 cut(s) 535
AclWI GGATC 3 cut(s) 34, 1109, 1222
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 4 cut(s) 99, 434, 779, 1323
AcuI CTGAAG 3 cut(s) 527, 777, 786
AcyI GRCGYC 2 cut(s) 807, 1131
AfaI GTAC 1 cut(s) 1232
AfiI CCNNNNNNNGG 1 cut(s) 774
AflII CTTAAG 1 cut(s) 1372
AgeI ACCGGT 2 cut(s) 959, 1189
AgsI TTSAA 8 cut(s) 52, 91, 218, 262, 533, 869, 1187, 1361
AhdI GACNNNNNGTC 1 cut(s) 895
AloI GAACNNNNNNTCC 2 cut(s) 1341, 1373
AluBI AGCT 7 cut(s) 121, 191, 466, 553, 662, 989, 1160
AluI AGCT 7 cut(s) 121, 191, 466, 553, 662, 989, 1160
Alw21I GWGCWC 1 cut(s) 1429
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 3 cut(s) 34, 1109, 1222
AoxI GGCC 2 cut(s) 141, 268
ApeKI GCWGC 2 cut(s) 358, 581
ApoI RAATTY 4 cut(s) 99, 434, 779, 1323
ArsI GACNNNNNNTTYG 2 cut(s) 121, 153
AsiGI ACCGGT 2 cut(s) 959, 1189
AspLEI GCGC 1 cut(s) 1414
AspS9I GGNCC 3 cut(s) 137, 741, 1443
AsuHPI GGTGA 4 cut(s) 23, 92, 241, 1156
AsuNHI GCTAGC 1 cut(s) 1156
AvaII GGWCC 3 cut(s) 137, 741, 1443
BaeI ACNNNNGTAYC 2 cut(s) 1008, 1041
BauI CACGAG 1 cut(s) 676
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 1429
BbvI GCAGC 2 cut(s) 370, 593
BccI CCATC 2 cut(s) 8, 242
BceAI ACGGC 4 cut(s) 81, 869, 1106, 1118
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 2 cut(s) 641, 1157
BfmI CTRYAG 1 cut(s) 657
BfrI CTTAAG 1 cut(s) 1372
BisI GCNGC 4 cut(s) 225, 359, 579, 582
BlpI GCTNAGC 1 cut(s) 462
BlsI GCNGC 4 cut(s) 226, 360, 580, 583
Bme18I GGWCC 3 cut(s) 137, 741, 1443
BmeRI GACNNNNNGTC 1 cut(s) 895
BmgT120I GGNCC 3 cut(s) 137, 741, 1443
BmiI GGNNCC 2 cut(s) 958, 1351
BmrI ACTGGG 2 cut(s) 867, 1408
BmsI GCATC 1 cut(s) 162
BmtI GCTAGC 1 cut(s) 1160
BmuI ACTGGG 2 cut(s) 867, 1408
BpiI GAAGAC 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 462
BpuEI CTTGAG 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 1234
BsaBI GATNNNNATC 1 cut(s) 671
BsaHI GRCGYC 2 cut(s) 807, 1131
BsaWI WCCGGW 7 cut(s) 424, 448, 470, 767, 959, 1189, 1199
BsaXI ACNNNNNCTCC 2 cut(s) 815, 845
Bsc4I CCNNNNNNNGG 1 cut(s) 774
Bse118I RCCGGY 3 cut(s) 743, 959, 1189
Bse1I ACTGG 2 cut(s) 862, 1403
Bse8I GATNNNNATC 1 cut(s) 671
BseGI GGATG 1 cut(s) 1259
BseJI GATNNNNATC 1 cut(s) 671
BseLI CCNNNNNNNGG 1 cut(s) 774
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 2 cut(s) 862, 1403
BseXI GCAGC 2 cut(s) 370, 593
BseYI CCCAGC 1 cut(s) 1296
BshFI GGCC 2 cut(s) 143, 270
BshTI ACCGGT 2 cut(s) 959, 1189
BsiHKAI GWGCWC 1 cut(s) 1429
BsiWI CGTACG 1 cut(s) 1230
BslFI GGGAC 1 cut(s) 667
BslI CCNNNNNNNGG 1 cut(s) 774
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 667
BsnI GGCC 2 cut(s) 143, 270
Bsp1286I GDGCHC 1 cut(s) 1429
Bsp143I GATC 5 cut(s) 26, 211, 1101, 1214, 1368
Bsp1720I GCTNAGC 1 cut(s) 462
BspACI CCGC 8 cut(s) 68, 225, 497, 578, 584, 731, 1208, 1353
BspANI GGCC 2 cut(s) 143, 270
BspCNI CTCAG 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 958, 1351
BspOI GCTAGC 1 cut(s) 1160
BspPI GGATC 3 cut(s) 34, 1109, 1222
BspTI CTTAAG 1 cut(s) 1372
BsrFI RCCGGY 3 cut(s) 743, 959, 1189
BsrI ACTGG 2 cut(s) 862, 1403
BssAI RCCGGY 3 cut(s) 743, 959, 1189
BssMI GATC 5 cut(s) 26, 211, 1101, 1214, 1368
BssNI GRCGYC 2 cut(s) 807, 1131
BssSI CACGAG 1 cut(s) 676
Bst2BI CACGAG 1 cut(s) 676
Bst4CI ACNGT 5 cut(s) 48, 80, 253, 658, 1168
Bst6I CTCTTC 2 cut(s) 383, 1114
BstACI GRCGYC 2 cut(s) 807, 1131
BstAFI CTTAAG 1 cut(s) 1372
BstAPI GCANNNNNTGC 2 cut(s) 587, 1013
BstBAI YACGTR 1 cut(s) 1234
BstC8I GCNNGC 2 cut(s) 551, 1158
BstDEI CTNAG 2 cut(s) 462, 1126
BstF5I GGATG 1 cut(s) 1259
BstHHI GCGC 1 cut(s) 1414
BstKTI GATC 5 cut(s) 29, 214, 1104, 1217, 1371
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 5 cut(s) 26, 211, 1101, 1214, 1368
BstMWI GCNNNNNNNGC 8 cut(s) 323, 578, 587, 881, 950, 1013, 1075, 1418
BstSFI CTRYAG 1 cut(s) 657
BstV1I GCAGC 2 cut(s) 370, 593
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 1101
BstXI CCANNNNNNTGG 1 cut(s) 907
BstYI RGATCY 1 cut(s) 1101
BsuRI GGCC 2 cut(s) 143, 270
BtsCI GGATG 1 cut(s) 1259
BtsIMutI CAGTG 2 cut(s) 44, 551
Cac8I GCNNGC 2 cut(s) 551, 1158
CfoI GCGC 1 cut(s) 1414
Cfr10I RCCGGY 3 cut(s) 743, 959, 1189
Cfr13I GGNCC 3 cut(s) 137, 741, 1443
CseI GACGC 2 cut(s) 796, 1139
Csp6I GTAC 1 cut(s) 1231
CspAI ACCGGT 2 cut(s) 959, 1189
CviAII CATG 6 cut(s) 811, 907, 1098, 1291, 1318, 1366
CviQI GTAC 1 cut(s) 1231
DdeI CTNAG 2 cut(s) 462, 1126
DpnI GATC 5 cut(s) 28, 213, 1103, 1216, 1370
DpnII GATC 5 cut(s) 26, 211, 1101, 1214, 1368
DraI TTTAAA 1 cut(s) 1306
DriI GACNNNNNGTC 1 cut(s) 895
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 2 cut(s) 383, 1114
Eam1105I GACNNNNNGTC 1 cut(s) 895
EarI CTCTTC 2 cut(s) 383, 1114
EciI GGCGGA 1 cut(s) 83
Eco32I GATATC 1 cut(s) 457
Eco47I GGWCC 3 cut(s) 137, 741, 1443
Eco57I CTGAAG 3 cut(s) 527, 777, 786
EcoRI GAATTC 1 cut(s) 779
EcoRV GATATC 1 cut(s) 457
EcoT22I ATGCAT 1 cut(s) 908
FaeI CATG 6 cut(s) 814, 910, 1101, 1294, 1321, 1369
FaqI GGGAC 1 cut(s) 667
FatI CATG 6 cut(s) 810, 906, 1097, 1290, 1317, 1365
FauNDI CATATG 2 cut(s) 339, 902
Fnu4HI GCNGC 4 cut(s) 225, 359, 579, 582
FokI GGATG 1 cut(s) 1266
Fsp4HI GCNGC 4 cut(s) 225, 359, 579, 582
FspBI CTAG 2 cut(s) 641, 1157
GlaI GCGC 1 cut(s) 1413
GluI GCNGC 4 cut(s) 225, 359, 579, 582
GsaI CCCAGC 1 cut(s) 1300
HaeIII GGCC 2 cut(s) 143, 270
HgaI GACGC 2 cut(s) 796, 1139
HhaI GCGC 1 cut(s) 1414
Hin1I GRCGYC 2 cut(s) 807, 1131
Hin1II CATG 6 cut(s) 814, 910, 1101, 1294, 1321, 1369
Hin6I GCGC 1 cut(s) 1412
HinP1I GCGC 1 cut(s) 1412
HincII GTYRAC 2 cut(s) 446, 889
HindII GTYRAC 2 cut(s) 446, 889
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 5 cut(s) 32, 645, 862, 879, 890
HphI GGTGA 4 cut(s) 23, 92, 241, 1156
Hpy166II GTNNAC 5 cut(s) 311, 446, 628, 709, 889
Hpy188I TCNGA 4 cut(s) 31, 757, 840, 1052
Hpy188III TCNNGA 2 cut(s) 36, 215
Hpy8I GTNNAC 5 cut(s) 311, 446, 628, 709, 889
Hpy99I CGWCG 1 cut(s) 1021
HpyAV CCTTC 6 cut(s) 17, 77, 85, 520, 539, 551
HpyCH4III ACNGT 5 cut(s) 48, 80, 253, 658, 1168
HpyCH4IV ACGT 3 cut(s) 246, 535, 1233
HpyCH4V TGCA 5 cut(s) 44, 358, 590, 906, 1266
HpyF10VI GCNNNNNNNGC 8 cut(s) 323, 578, 587, 881, 950, 1013, 1075, 1418
HpyF3I CTNAG 2 cut(s) 462, 1126
HpySE526I ACGT 3 cut(s) 246, 535, 1233
Hsp92I GRCGYC 2 cut(s) 807, 1131
Hsp92II CATG 6 cut(s) 814, 910, 1101, 1294, 1321, 1369
HspAI GCGC 1 cut(s) 1412
Kzo9I GATC 5 cut(s) 26, 211, 1101, 1214, 1368
LmnI GCTCC 3 cut(s) 323, 986, 1004
Lsp1109I GCAGC 2 cut(s) 370, 593
LweI GCATC 1 cut(s) 162
MaeI CTAG 2 cut(s) 641, 1157
MaeII ACGT 3 cut(s) 246, 535, 1233
MaeIII GTNAC 6 cut(s) 157, 247, 565, 1030, 1256, 1394
MalI GATC 5 cut(s) 28, 213, 1103, 1216, 1370
MboI GATC 5 cut(s) 26, 211, 1101, 1214, 1368
MflI RGATCY 1 cut(s) 1101
MhlI GDGCHC 1 cut(s) 1429
MluCI AATT 6 cut(s) 99, 434, 779, 826, 980, 1323
MlyI GAGTC 3 cut(s) 41, 654, 884
MmeI TCCRAC 2 cut(s) 276, 1192
MnlI CCTC 7 cut(s) 64, 69, 281, 763, 948, 1340, 1402
Mph1103I ATGCAT 1 cut(s) 908
MseI TTAA 9 cut(s) 240, 432, 636, 764, 786, 1176, 1305, 1373, 1434
MslI CAYNNNNRTG 1 cut(s) 905
MspA1I CMGCKG 2 cut(s) 584, 1355
MspCI CTTAAG 1 cut(s) 1372
MwoI GCNNNNNNNGC 8 cut(s) 323, 578, 587, 881, 950, 1013, 1075, 1418
NdeI CATATG 2 cut(s) 339, 902
NdeII GATC 5 cut(s) 26, 211, 1101, 1214, 1368
NheI GCTAGC 1 cut(s) 1156
NlaIII CATG 6 cut(s) 814, 910, 1101, 1294, 1321, 1369
NlaIV GGNNCC 2 cut(s) 958, 1351
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 3 cut(s) 247, 565, 1394
NsiI ATGCAT 1 cut(s) 908
PcsI WCGNNNNNNNCGW 2 cut(s) 167, 243
PfeI GAWTC 2 cut(s) 862, 879
Pfl23II CGTACG 1 cut(s) 1230
PflFI GACNNNGTC 1 cut(s) 1133
PinAI ACCGGT 2 cut(s) 959, 1189
PkrI GCNGC 4 cut(s) 226, 360, 580, 583
PleI GAGTC 3 cut(s) 40, 653, 884
PpsI GAGTC 3 cut(s) 40, 653, 884
Ppu21I YACGTR 1 cut(s) 1234
PsiI TTATAA 1 cut(s) 851
Psp1406I AACGTT 1 cut(s) 535
PspFI CCCAGC 1 cut(s) 1296
PspLI CGTACG 1 cut(s) 1230
PspN4I GGNNCC 2 cut(s) 958, 1351
PspPI GGNCC 3 cut(s) 137, 741, 1443
PsuI RGATCY 1 cut(s) 1101
PsyI GACNNNGTC 1 cut(s) 1133
RsaI GTAC 1 cut(s) 1232
RsaNI GTAC 1 cut(s) 1231
RseI CAYNNNNRTG 1 cut(s) 905
SaqAI TTAA 9 cut(s) 240, 432, 636, 764, 786, 1176, 1305, 1373, 1434
SatI GCNGC 4 cut(s) 225, 359, 579, 582
Sau3AI GATC 5 cut(s) 26, 211, 1101, 1214, 1368
Sau96I GGNCC 3 cut(s) 137, 741, 1443
SchI GAGTC 3 cut(s) 41, 654, 884
SduI GDGCHC 1 cut(s) 1429
SfaNI GCATC 1 cut(s) 162
SfcI CTRYAG 1 cut(s) 657
SinI GGWCC 3 cut(s) 137, 741, 1443
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 2 cut(s) 186, 1372
SmoI CTYRAG 2 cut(s) 186, 1372
Sse9I AATT 6 cut(s) 99, 434, 779, 826, 980, 1323
SsiI CCGC 8 cut(s) 68, 225, 497, 578, 584, 731, 1208, 1353
SspMI CTAG 2 cut(s) 641, 1157
TaaI ACNGT 5 cut(s) 48, 80, 253, 658, 1168
TaiI ACGT 3 cut(s) 249, 538, 1236
TaqI TCGA 4 cut(s) 154, 170, 877, 1112
TasI AATT 6 cut(s) 99, 434, 779, 826, 980, 1323
TauI GCSGC 2 cut(s) 227, 581
TfiI GAWTC 2 cut(s) 862, 879
Tru1I TTAA 9 cut(s) 240, 432, 636, 764, 786, 1176, 1305, 1373, 1434
Tru9I TTAA 9 cut(s) 240, 432, 636, 764, 786, 1176, 1305, 1373, 1434
TscAI CASTG 2 cut(s) 51, 551
TseFI GTSAC 3 cut(s) 247, 565, 1394
TseI GCWGC 2 cut(s) 358, 581
Tsp45I GTSAC 3 cut(s) 247, 565, 1394
TspDTI ATGAA 2 cut(s) 491, 590
TspGWI ACGGA 1 cut(s) 956
TspRI CASTG 2 cut(s) 51, 551
Tth111I GACNNNGTC 1 cut(s) 1133
Vha464I CTTAAG 1 cut(s) 1372
VpaK11BI GGWCC 3 cut(s) 137, 741, 1443
XapI RAATTY 4 cut(s) 99, 434, 779, 1323
XspI CTAG 2 cut(s) 641, 1157
Zsp2I ATGCAT 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.