Rh7BG435600

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
50015763 .. 50016351
589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG435600.1

Sequence Viewer

Length: 315 bp
ATGTTTGATCTCATGGAAACATTTACGGTCATATTTTGTTTAACAGGGGTAGCAATCGGATCTGGTCGGCAAGCAATAGTAGCTATTGTAAATATAGGTAGCTACTACCTGGTTGGCATGCCTGTTGGGGTTGTTTTAGGATGGTTGCTAATGTTTGGTATCAAGGGCATGTGGGCTGGAATGATCTGTGGAACTGTGGTTCAAACCTTGATACTGATCATTATCACCATGAGATGTGATTGGGAAAAAGAGGCAGAGAGAGCTCGAATTCACATAACAAAGGATGCAGCTTCACCATTGATCTTTGCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.4

Weight (kDa)

6.53

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10420 AT5G44050 AT5G65380
fragaria_vesca FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36170 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_7g30730 FvH4_7g30730
malus_domestica MD01G1032800.v1.1 MD08G1190900.v1.1 MD08G1191000.v1.1 MD15G1378200.v1.1 MD15G1378900.v1.1 MD15G1379100.v1.1
prunus_persica Prupe.1G524800_v2.0.a1 Prupe.1G525000_v2.0.a1 Prupe.1G525200_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.6G195500_v2.0.a1
pyrus_communis pycom01g06450 pycom08g16390 pycom15g33900 pycom15g33930 pycom15g33950
rosa_chinensis RchiOBHm_Chr2g0112071 RchiOBHm_Chr7g0237941 RchiOBHm_Chr7g0237951 RchiOBHm_Chr7g0237971 RchiOBHm_Chr7g0238021
rosa_laevigata RLG00000000946 RLG00000000947 RLG00000000949 RLG00000017947
rosa_multiflora Rmu_co8087868.1_g000001 Rmu_co8407183.1_g000001 Rmu_co8459217.1_g000001 Rmu_sc0001339.1_g000020 Rmu_sc0002041.1_g000021 Rmu_sc0002586.1_g000009 Rmu_sc0002877.1_g000026 Rmu_sc0002877.1_g000032
rosa_roxburghii Rroxscaffold_2G00131800 Rroxscaffold_3G00223450 Rroxscaffold_3G00223470 Rroxscaffold_3G00223480
rosa_rugosa Rorug02G0178300 Rorug07G0309600 Rorug07G0309700.1 Rorug07G0309800.1 Rorug07G0309900.1 Rorug07G0310000 Rorug07G0310100
rosa_samantha Rh2AG230300 Rh2BG243500 Rh2DG238200 Rh7AG464600 Rh7AG464700 Rh7AG464900 Rh7BG435300 Rh7BG435600 Rh7CG482800 Rh7CG483100 Rh7CG483500 Rh7DG451500 Rh7DG451700 Rh7DG451800
rosa_wichuraiana Rw2G017840 Rw2G017890 Rw7G038490 Rw7G038500 Rw7G038510 Rw7G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 67
AcsI RAATTY 1 cut(s) 267
AgsI TTSAA 1 cut(s) 203
AjnI CCWGG 1 cut(s) 108
AloI GAACNNNNNNTCC 2 cut(s) 183, 215
AluBI AGCT 4 cut(s) 83, 102, 263, 290
AluI AGCT 4 cut(s) 83, 102, 263, 290
Alw21I GWGCWC 1 cut(s) 265
AlwI GGATC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 267
AsuHPI GGTGA 2 cut(s) 217, 285
BanII GRGCYC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 299
BccI CCATC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 110
BclI TGATCA 1 cut(s) 216
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 1 cut(s) 274
BsaBI GATNNNNATC 2 cut(s) 215, 221
Bse8I GATNNNNATC 2 cut(s) 215, 221
BseBI CCWGG 1 cut(s) 110
BseGI GGATG 2 cut(s) 146, 289
BseJI GATNNNNATC 2 cut(s) 215, 221
BseXI GCAGC 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 5 cut(s) 7, 59, 183, 216, 300
BspPI GGATC 1 cut(s) 67
BssMI GATC 5 cut(s) 7, 59, 183, 216, 300
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 28, 196
BstC8I GCNNGC 2 cut(s) 72, 119
BstF5I GGATG 2 cut(s) 146, 289
BstKTI GATC 5 cut(s) 10, 62, 186, 219, 303
BstMBI GATC 5 cut(s) 7, 59, 183, 216, 300
BstMWI GCNNNNNNNGC 2 cut(s) 80, 260
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 2 cut(s) 121, 172
BstSCI CCNGG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
BtsCI GGATG 2 cut(s) 146, 289
Cac8I GCNNGC 2 cut(s) 72, 119
CsiI ACCWGGT 1 cut(s) 108
CviAII CATG 4 cut(s) 13, 118, 169, 229
CviJI RGCY 5 cut(s) 83, 102, 176, 263, 290
CviKI_1 RGCY 5 cut(s) 83, 102, 176, 263, 290
DpnI GATC 5 cut(s) 9, 61, 185, 218, 302
DpnII GATC 5 cut(s) 7, 59, 183, 216, 300
Ecl136II GAGCTC 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 265
FaeI CATG 4 cut(s) 16, 121, 172, 232
FaiI YATR 7 cut(s) 14, 32, 95, 119, 170, 230, 275
FatI CATG 4 cut(s) 12, 117, 168, 228
FbaI TGATCA 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 2 cut(s) 153, 296
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 288
Hin1II CATG 4 cut(s) 16, 121, 172, 232
HphI GGTGA 2 cut(s) 217, 285
Hpy188I TCNGA 1 cut(s) 59
HpyCH4III ACNGT 2 cut(s) 28, 196
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 260
Hsp92II CATG 4 cut(s) 16, 121, 172, 232
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 5 cut(s) 7, 59, 183, 216, 300
LpnPI CCDG 6 cut(s) 30, 48, 95, 122, 135, 162
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 274
MabI ACCWGGT 1 cut(s) 108
MalI GATC 5 cut(s) 9, 61, 185, 218, 302
MboI GATC 5 cut(s) 7, 59, 183, 216, 300
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 1 cut(s) 267
MnlI CCTC 1 cut(s) 244
MseI TTAA 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 80, 260
NdeII GATC 5 cut(s) 7, 59, 183, 216, 300
NlaIII CATG 4 cut(s) 16, 121, 172, 232
NspI RCATGY 2 cut(s) 121, 172
PaeI GCATGC 1 cut(s) 121
PkrI GCNGC 1 cut(s) 289
Psp124BI GAGCTC 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PsuI RGATCY 1 cut(s) 59
SacI GAGCTC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 5 cut(s) 7, 59, 183, 216, 300
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 265
SetI ASST 7 cut(s) 85, 100, 104, 111, 209, 265, 292
SexAI ACCWGGT 1 cut(s) 108
SfaNI GCATC 1 cut(s) 274
SphI GCATGC 1 cut(s) 121
Sse9I AATT 1 cut(s) 267
SstI GAGCTC 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 28, 196
TaqI TCGA 1 cut(s) 265
TasI AATT 1 cut(s) 267
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseI GCWGC 1 cut(s) 287
XapI RAATTY 1 cut(s) 267
XceI RCATGY 2 cut(s) 121, 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.