RchiOBHm_Chr7g0237951

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000476
Physical Location & Seq
Forward (+)
63268628 .. 63270020
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21325

Sequence Viewer

Length: 372 bp
ATGATCTTTACCTCCAGCATTCCTGTTATTGCTATGGTCAATGATTTATCAGTCTTATTGGCATTCACTATTCTCCTCAGTTGCATTCAACCAGTGCTCTCAGGGGTAGCAATCGGATCTGGTCGGCAAGCAATAGTAGCTATTGTAAATATAGGTAGCTACTACCTGGTTGGCATGCCTGTTGGGGTTGTTTTAGGATGGTTGCTAGTGTTTGGTATCAAGGGTATGTGGGCTGGAATGATCTGTGGAATTGTGGTTCAAACCTTGATACTGATAATTATCACCATAAGATGTGATTGGGCAAAAGAGGCAGAGAGAGCTCGAATTCACATAACAAAGGATGCAGCTTCACCATTGATCTTTGCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

123

Amino Acids

13.14

Weight (kDa)

8.59

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10420 AT5G44050 AT5G65380
fragaria_vesca FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36170 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_7g30730 FvH4_7g30730
malus_domestica MD01G1032800.v1.1 MD08G1190900.v1.1 MD08G1191000.v1.1 MD15G1378200.v1.1 MD15G1378900.v1.1 MD15G1379100.v1.1
prunus_persica Prupe.1G524800_v2.0.a1 Prupe.1G525000_v2.0.a1 Prupe.1G525200_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.6G195500_v2.0.a1
pyrus_communis pycom01g06450 pycom08g16390 pycom15g33900 pycom15g33930 pycom15g33950
rosa_chinensis RchiOBHm_Chr2g0112071 RchiOBHm_Chr7g0237941 RchiOBHm_Chr7g0237951 RchiOBHm_Chr7g0237971 RchiOBHm_Chr7g0238021
rosa_laevigata RLG00000000946 RLG00000000947 RLG00000000949 RLG00000017947
rosa_multiflora Rmu_co8087868.1_g000001 Rmu_co8407183.1_g000001 Rmu_co8459217.1_g000001 Rmu_sc0001339.1_g000020 Rmu_sc0002041.1_g000021 Rmu_sc0002586.1_g000009 Rmu_sc0002877.1_g000026 Rmu_sc0002877.1_g000032
rosa_roxburghii Rroxscaffold_2G00131800 Rroxscaffold_3G00223450 Rroxscaffold_3G00223470 Rroxscaffold_3G00223480
rosa_rugosa Rorug02G0178300 Rorug07G0309600 Rorug07G0309700.1 Rorug07G0309800.1 Rorug07G0309900.1 Rorug07G0310000 Rorug07G0310100
rosa_samantha Rh2AG230300 Rh2BG243500 Rh2DG238200 Rh7AG464600 Rh7AG464700 Rh7AG464900 Rh7BG435300 Rh7BG435600 Rh7CG482800 Rh7CG483100 Rh7CG483500 Rh7DG451500 Rh7DG451700 Rh7DG451800
rosa_wichuraiana Rw2G017840 Rw2G017890 Rw7G038490 Rw7G038500 Rw7G038510 Rw7G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 324
AgsI TTSAA 2 cut(s) 89, 260
AjnI CCWGG 1 cut(s) 165
AloI GAACNNNNNNTCC 2 cut(s) 240, 272
AluBI AGCT 4 cut(s) 140, 159, 320, 347
AluI AGCT 4 cut(s) 140, 159, 320, 347
Alw21I GWGCWC 2 cut(s) 99, 322
AlwI GGATC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 324
AsuHPI GGTGA 2 cut(s) 274, 342
BanII GRGCYC 1 cut(s) 322
Bbv12I GWGCWC 2 cut(s) 99, 322
BbvI GCAGC 1 cut(s) 356
BccI CCATC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 167
BfaI CTAG 1 cut(s) 206
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 331
BsaBI GATNNNNATC 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 92
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 1 cut(s) 167
BseGI GGATG 2 cut(s) 203, 346
BseJI GATNNNNATC 1 cut(s) 278
BseMII CTCAG 2 cut(s) 91, 114
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 356
BsiHKAI GWGCWC 2 cut(s) 99, 322
BsmI GAATGC 3 cut(s) 18, 62, 84
Bsp1286I GDGCHC 2 cut(s) 99, 322
Bsp143I GATC 4 cut(s) 3, 116, 240, 357
BspCNI CTCAG 2 cut(s) 90, 113
BspPI GGATC 1 cut(s) 124
BsrI ACTGG 1 cut(s) 92
BssMI GATC 4 cut(s) 3, 116, 240, 357
Bst2UI CCWGG 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 129, 176
BstDEI CTNAG 2 cut(s) 77, 100
BstF5I GGATG 2 cut(s) 203, 346
BstKTI GATC 4 cut(s) 6, 119, 243, 360
BstMBI GATC 4 cut(s) 3, 116, 240, 357
BstMWI GCNNNNNNNGC 3 cut(s) 137, 308, 317
BstNI CCWGG 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 356
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BtsCI GGATG 2 cut(s) 203, 346
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 129, 176
CsiI ACCWGGT 1 cut(s) 165
CviAII CATG 1 cut(s) 175
CviJI RGCY 5 cut(s) 140, 159, 233, 320, 347
CviKI_1 RGCY 5 cut(s) 140, 159, 233, 320, 347
DdeI CTNAG 2 cut(s) 77, 100
DpnI GATC 4 cut(s) 5, 118, 242, 359
DpnII GATC 4 cut(s) 3, 116, 240, 357
Ecl136II GAGCTC 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 322
Eco53kI GAGCTC 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 320
EcoRI GAATTC 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 322
FaeI CATG 1 cut(s) 178
FaiI YATR 6 cut(s) 35, 152, 176, 227, 287, 332
FatI CATG 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 2 cut(s) 210, 353
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 1 cut(s) 345
FspBI CTAG 1 cut(s) 206
GluI GCNGC 1 cut(s) 345
Hin1II CATG 1 cut(s) 178
HphI GGTGA 2 cut(s) 274, 342
Hpy188I TCNGA 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 84, 344
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 308, 317
HpyF3I CTNAG 2 cut(s) 77, 100
Hsp92II CATG 1 cut(s) 178
Kzo9I GATC 4 cut(s) 3, 116, 240, 357
LpnPI CCDG 9 cut(s) 28, 36, 87, 105, 105, 152, 179, 192, 219
Lsp1109I GCAGC 1 cut(s) 356
LweI GCATC 1 cut(s) 331
MabI ACCWGGT 1 cut(s) 165
MaeI CTAG 1 cut(s) 206
MalI GATC 4 cut(s) 5, 118, 242, 359
MboI GATC 4 cut(s) 3, 116, 240, 357
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 2 cut(s) 99, 322
MluCI AATT 3 cut(s) 249, 276, 324
MnlI CCTC 3 cut(s) 22, 86, 301
MspR9I CCNGG 1 cut(s) 167
Mva1269I GAATGC 3 cut(s) 18, 62, 84
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 3 cut(s) 137, 308, 317
NdeII GATC 4 cut(s) 3, 116, 240, 357
NlaIII CATG 1 cut(s) 178
NspI RCATGY 1 cut(s) 178
PaeI GCATGC 1 cut(s) 178
PctI GAATGC 3 cut(s) 18, 62, 84
PkrI GCNGC 1 cut(s) 346
Psp124BI GAGCTC 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PsuI RGATCY 1 cut(s) 116
SacI GAGCTC 1 cut(s) 322
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 4 cut(s) 3, 116, 240, 357
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 2 cut(s) 99, 322
SetI ASST 8 cut(s) 14, 142, 157, 161, 168, 266, 322, 349
SexAI ACCWGGT 1 cut(s) 165
SfaNI GCATC 1 cut(s) 331
SphI GCATGC 1 cut(s) 178
Sse9I AATT 3 cut(s) 249, 276, 324
SspMI CTAG 1 cut(s) 206
SstI GAGCTC 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 165
TaqI TCGA 1 cut(s) 322
TasI AATT 3 cut(s) 249, 276, 324
TscAI CASTG 1 cut(s) 99
TseI GCWGC 1 cut(s) 344
TspRI CASTG 1 cut(s) 99
XapI RAATTY 1 cut(s) 324
XceI RCATGY 1 cut(s) 178
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.