Rh7CG482800

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000476
Physical Location & Seq
Forward (+)
64949169 .. 64950495
1327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG482800.1

Sequence Viewer

Length: 582 bp
ATGCTTTGTCTTTGCAGCATGAGTATCTATGCTTGGGAGTCCATGATTCCACTAGGATTTTTGGCGGCAGTTGGAGTGCGGGTAGCAAATGAACTTGGCGCAAGCAACGCAAAAGGTGCAAAATTTGCAACCACAGTTTCAGTCTTGACCTCCCTAGCAGTGGGACTTCTATTTTGTTTAATAATAATAGTCTTCCATGAGAAGCTTGCAATGATCTTTACCTCCAGCATTCCTGTTATTGCTATGGTCAATGATTTATCAGTCTTGTTGGCATTCACTATTCTCCTCAATTGCATTCAACCAGTGCTCTCAGGGGTAGCAATCGGATCTGGTCGGCAAGCAATAGTAGCTATTGTAAATATAGGTAGCTACTACCTGGTTGGCATGCCTGTTGGGGTTGTTTTAGGATGGTTGCTAATGTTTGGTATCAAGGGCATGTGGGCTGGAATGATCTGTGGAACTGTGGTTCAAACCTTGATACTGATCATTATCACCATGAGATGTGATTGGGAAAAAGAGGCAGAGAGAGCTCGAATTCACATAACAAAGGATGCAGCTTCACCATTGATCTTTGCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

193

Amino Acids

20.62

Weight (kDa)

8.25

Isoelectric Point (pI)

28.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 7 - 133 2.3e-19 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10420 AT5G44050 AT5G65380
fragaria_vesca FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36170 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_7g30730 FvH4_7g30730
malus_domestica MD01G1032800.v1.1 MD08G1190900.v1.1 MD08G1191000.v1.1 MD15G1378200.v1.1 MD15G1378900.v1.1 MD15G1379100.v1.1
prunus_persica Prupe.1G524800_v2.0.a1 Prupe.1G525000_v2.0.a1 Prupe.1G525200_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.6G195500_v2.0.a1
pyrus_communis pycom01g06450 pycom08g16390 pycom15g33900 pycom15g33930 pycom15g33950
rosa_chinensis RchiOBHm_Chr2g0112071 RchiOBHm_Chr7g0237941 RchiOBHm_Chr7g0237951 RchiOBHm_Chr7g0237971 RchiOBHm_Chr7g0238021
rosa_laevigata RLG00000000946 RLG00000000947 RLG00000000949 RLG00000017947
rosa_multiflora Rmu_co8087868.1_g000001 Rmu_co8407183.1_g000001 Rmu_co8459217.1_g000001 Rmu_sc0001339.1_g000020 Rmu_sc0002041.1_g000021 Rmu_sc0002586.1_g000009 Rmu_sc0002877.1_g000026 Rmu_sc0002877.1_g000032
rosa_roxburghii Rroxscaffold_2G00131800 Rroxscaffold_3G00223450 Rroxscaffold_3G00223470 Rroxscaffold_3G00223480
rosa_rugosa Rorug02G0178300 Rorug07G0309600 Rorug07G0309700.1 Rorug07G0309800.1 Rorug07G0309900.1 Rorug07G0310000 Rorug07G0310100
rosa_samantha Rh2AG230300 Rh2BG243500 Rh2DG238200 Rh7AG464600 Rh7AG464700 Rh7AG464900 Rh7BG435300 Rh7BG435600 Rh7CG482800 Rh7CG483100 Rh7CG483500 Rh7DG451500 Rh7DG451700 Rh7DG451800
rosa_wichuraiana Rw2G017840 Rw2G017890 Rw7G038490 Rw7G038500 Rw7G038510 Rw7G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 65, 79
AclWI GGATC 1 cut(s) 334
AcsI RAATTY 2 cut(s) 122, 534
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 2 cut(s) 299, 470
AjnI CCWGG 1 cut(s) 375
AloI GAACNNNNNNTCC 2 cut(s) 450, 482
AluBI AGCT 5 cut(s) 205, 350, 369, 530, 557
AluI AGCT 5 cut(s) 205, 350, 369, 530, 557
Alw21I GWGCWC 2 cut(s) 309, 532
AlwI GGATC 1 cut(s) 334
ApeKI GCWGC 2 cut(s) 15, 554
ApoI RAATTY 2 cut(s) 122, 534
ArsI GACNNNNNNTTYG 2 cut(s) 156, 188
AspLEI GCGC 1 cut(s) 101
AsuHPI GGTGA 2 cut(s) 484, 552
BanII GRGCYC 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 184
Bbv12I GWGCWC 2 cut(s) 309, 532
BbvI GCAGC 2 cut(s) 27, 566
BccI CCATC 1 cut(s) 402
BciT130I CCWGG 1 cut(s) 377
BclI TGATCA 1 cut(s) 483
BfaI CTAG 2 cut(s) 53, 155
BisI GCNGC 3 cut(s) 16, 66, 555
BlsI GCNGC 3 cut(s) 17, 67, 556
Bme1390I CCNGG 1 cut(s) 377
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 1 cut(s) 541
BpiI GAAGAC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 208
BsaBI GATNNNNATC 2 cut(s) 482, 488
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 216
Bse8I GATNNNNATC 2 cut(s) 482, 488
BseBI CCWGG 1 cut(s) 377
BseGI GGATG 2 cut(s) 413, 556
BseJI GATNNNNATC 2 cut(s) 482, 488
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 302
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 27, 566
BsiHKAI GWGCWC 2 cut(s) 309, 532
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 177
BsmI GAATGC 3 cut(s) 228, 272, 294
Bsp1286I GDGCHC 2 cut(s) 309, 532
Bsp143I GATC 5 cut(s) 213, 326, 450, 483, 567
BspACI CCGC 2 cut(s) 65, 79
BspCNI CTCAG 1 cut(s) 323
BspPI GGATC 1 cut(s) 334
BsrDI GCAATG 1 cut(s) 216
BsrI ACTGG 1 cut(s) 302
BssMI GATC 5 cut(s) 213, 326, 450, 483, 567
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 2 cut(s) 136, 463
BstAPI GCANNNNNTGC 2 cut(s) 116, 125
BstC8I GCNNGC 4 cut(s) 103, 207, 339, 386
BstDEI CTNAG 1 cut(s) 310
BstF5I GGATG 2 cut(s) 413, 556
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 5 cut(s) 216, 329, 453, 486, 570
BstMBI GATC 5 cut(s) 213, 326, 450, 483, 567
BstMWI GCNNNNNNNGC 5 cut(s) 107, 116, 125, 347, 527
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 2 cut(s) 388, 439
BstSCI CCNGG 1 cut(s) 375
BstV1I GCAGC 2 cut(s) 27, 566
BstV2I GAAGAC 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BtsCI GGATG 2 cut(s) 413, 556
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 2 cut(s) 165, 309
Cac8I GCNNGC 4 cut(s) 103, 207, 339, 386
CfoI GCGC 1 cut(s) 101
CsiI ACCWGGT 1 cut(s) 375
CviAII CATG 6 cut(s) 19, 43, 197, 385, 436, 496
CviJI RGCY 6 cut(s) 205, 350, 369, 443, 530, 557
CviKI_1 RGCY 6 cut(s) 205, 350, 369, 443, 530, 557
DdeI CTNAG 1 cut(s) 310
DpnI GATC 5 cut(s) 215, 328, 452, 485, 569
DpnII GATC 5 cut(s) 213, 326, 450, 483, 567
Ecl136II GAGCTC 1 cut(s) 530
Eco24I GRGCYC 1 cut(s) 532
Eco53kI GAGCTC 1 cut(s) 530
EcoICRI GAGCTC 1 cut(s) 530
EcoRI GAATTC 1 cut(s) 534
EcoRII CCWGG 1 cut(s) 375
EcoT38I GRGCYC 1 cut(s) 532
FaeI CATG 6 cut(s) 22, 46, 200, 388, 439, 499
FaqI GGGAC 1 cut(s) 177
FatI CATG 6 cut(s) 18, 42, 196, 384, 435, 495
FauI CCCGC 1 cut(s) 72
FbaI TGATCA 1 cut(s) 483
Fnu4HI GCNGC 3 cut(s) 16, 66, 555
FokI GGATG 2 cut(s) 420, 563
FriOI GRGCYC 1 cut(s) 532
Fsp4HI GCNGC 3 cut(s) 16, 66, 555
FspBI CTAG 2 cut(s) 53, 155
GlaI GCGC 1 cut(s) 100
GluI GCNGC 3 cut(s) 16, 66, 555
GsuI CTGGAG 1 cut(s) 208
HhaI GCGC 1 cut(s) 101
Hin1II CATG 6 cut(s) 22, 46, 200, 388, 439, 499
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 2 cut(s) 38, 46
HphI GGTGA 2 cut(s) 484, 552
Hpy188I TCNGA 1 cut(s) 326
Hpy188III TCNNGA 1 cut(s) 145
HpyCH4III ACNGT 2 cut(s) 136, 463
HpyCH4V TGCA 6 cut(s) 15, 119, 128, 209, 294, 554
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 116, 125, 347, 527
HpyF3I CTNAG 1 cut(s) 310
Hsp92II CATG 6 cut(s) 22, 46, 200, 388, 439, 499
HspAI GCGC 1 cut(s) 99
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 5 cut(s) 213, 326, 450, 483, 567
LpnPI CCDG 9 cut(s) 238, 246, 297, 315, 315, 362, 389, 402, 429
Lsp1109I GCAGC 2 cut(s) 27, 566
LweI GCATC 1 cut(s) 541
MabI ACCWGGT 1 cut(s) 375
MaeI CTAG 2 cut(s) 53, 155
MalI GATC 5 cut(s) 215, 328, 452, 485, 569
MboI GATC 5 cut(s) 213, 326, 450, 483, 567
MboII GAAGA 1 cut(s) 184
MfeI CAATTG 1 cut(s) 289
MflI RGATCY 1 cut(s) 326
MhlI GDGCHC 2 cut(s) 309, 532
MluCI AATT 3 cut(s) 122, 289, 534
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 4 cut(s) 160, 232, 296, 511
MseI TTAA 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 377
MunI CAATTG 1 cut(s) 289
Mva1269I GAATGC 3 cut(s) 228, 272, 294
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 5 cut(s) 107, 116, 125, 347, 527
NdeII GATC 5 cut(s) 213, 326, 450, 483, 567
NlaIII CATG 6 cut(s) 22, 46, 200, 388, 439, 499
NspI RCATGY 2 cut(s) 388, 439
PaeI GCATGC 1 cut(s) 388
PctI GAATGC 3 cut(s) 228, 272, 294
PfeI GAWTC 1 cut(s) 46
PkrI GCNGC 3 cut(s) 17, 67, 556
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Psp124BI GAGCTC 1 cut(s) 532
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PsuI RGATCY 1 cut(s) 326
SacI GAGCTC 1 cut(s) 532
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 3 cut(s) 16, 66, 555
Sau3AI GATC 5 cut(s) 213, 326, 450, 483, 567
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 377
SduI GDGCHC 2 cut(s) 309, 532
SexAI ACCWGGT 1 cut(s) 375
SfaNI GCATC 1 cut(s) 541
SphI GCATGC 1 cut(s) 388
Sse9I AATT 3 cut(s) 122, 289, 534
SsiI CCGC 2 cut(s) 65, 79
SspMI CTAG 2 cut(s) 53, 155
SstI GAGCTC 1 cut(s) 532
StyD4I CCNGG 1 cut(s) 375
TaaI ACNGT 2 cut(s) 136, 463
TaqI TCGA 1 cut(s) 532
TasI AATT 3 cut(s) 122, 289, 534
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 1 cut(s) 46
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TscAI CASTG 2 cut(s) 165, 309
TseI GCWGC 2 cut(s) 15, 554
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 2 cut(s) 165, 309
XapI RAATTY 2 cut(s) 122, 534
XceI RCATGY 2 cut(s) 388, 439
XspI CTAG 2 cut(s) 53, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.