pycom01g06450

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
6772569 .. 6778451
5883 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g06450.1

Sequence Viewer

Length: 1482 bp
ATGCCAAGTAACAGTGCACTAGTGGAGGCAGAGGTTCCATTGTTGGATGATTTAGCTTCAACCGTCCGATTGAAAAGTGAACATAATGATGATGAAACTCAAGCTACTACTCTTGTAAGTAGATCTTTGATTGAATCAAAGAAGCTGTGGCACATAGTTGGTCCCGCAATCTTTAGCCGTGTAGCCTCGTATTCCATGTTGGTCATCACCCAAGCCTTCGCCGGCCACCTCGGCGACCTCGAGCTTGCTGCCATCTCGATTGCTAATAATGTCATTGTTGGTTTCGATTTTGGGCTCTTGTTAGGGATGGCAAGTGCTTTAGAAACACTATGTGGGCAAGCTTATGGAGCAAAGAAATACTACATGCTTGGAGTGTACATGCAAAGATCATGGATTGTTTTGTTTCTGTGCTGTATTCTTCTTCTACCAATCTATCTCTTTGCCTCTCCATTTTTGAAGCTTTTAGGGCAACCCACAGAAGTTGCAGAGTTGTCTGGCGTTGTGTCCATGGTCATGATTCCTCTTCACTTCAGCTTTGCGTTTCAATTTCCATTGCAGAGGTTCCTGCAGAGCCAGCTCAAAACAGCAGTGATTGCATGGGTTTCTCTGGTTGGCCTTGCAGTGCATGTGTTTGTGAGTTGGTTTTTTGTGTACAGACTTCAGTTTGGAGTGATTGGCACTGCAATTACCATAAACTTTTCTTGGTGGGTTTTGGTGTTTGGTCTTCTGGGTTACACTCTCTTTGGTGGCTGCCCCTTGACTTGGGCTGGTTTCTCCATTGAAGCATTCTCTGGCCTTTGGGAATTCACTAAACTCTCTGCTGCTTCTGGAGTCATGCTTTGCCTGGAGAATTGGTATTATAGAATACTAATTCTGATGACTGGGAATCTACAGAACGCAGAGATTGCTGTGGATGCTTTGTCTATATGCATGACGATAAATGGGTGGGAGATGATGATTCCTCTGGCCTTCTTTGCAGGAGCTGGAGTTAGGGTTGCAAATGAGCTTGGAGCTGGGAATGGGAAGGGAGCCAAGTTTGCGACAACAGTGGCAGTTGTGACATCTGTTATAATTGGCCTCTTCTTTTGGCTCTTGATTATGATGTTCCACAACGAGTTCGGCTACATATTTACAAATAGTGAACCTGTTCTTACTGAAGTTAGCAAACTCTCCCTTCTACTAGCCGTCACAATTTTGCTCAACAGTGTTCAACCAGTTCTCTCTGGTGTGGCCGTGGGATCTGGGTGGCAATCTTATGTGGCATACATAAACTTGGGCTGCTATTATCTGATTGGCGTGCCACTTGGGTTTTTAATGGGATGGTTCTTCCACCAAGGAGTGATGGGAATTTGGGCTGGAATGATCTTTGGTGGGACAGCAGTTCAAACCTTGATATTGGCCATTATCACAATTCGATGCGACTGGGATAAAGAGGCAGAGAAAGCAAGCATGCACGTATTGAGGTGGGCGGACAAGAACTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

494

Amino Acids

54.15

Weight (kDa)

5.77

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 55 - 214 1.4e-31 MatE
MatE PF01554 277 - 438 4.3e-27 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10420 AT5G44050 AT5G65380
fragaria_vesca FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36170 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_7g30730 FvH4_7g30730
malus_domestica MD01G1032800.v1.1 MD08G1190900.v1.1 MD08G1191000.v1.1 MD15G1378200.v1.1 MD15G1378900.v1.1 MD15G1379100.v1.1
prunus_persica Prupe.1G524800_v2.0.a1 Prupe.1G525000_v2.0.a1 Prupe.1G525200_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.6G195500_v2.0.a1
pyrus_communis pycom01g06450 pycom08g16390 pycom15g33900 pycom15g33930 pycom15g33950
rosa_chinensis RchiOBHm_Chr2g0112071 RchiOBHm_Chr7g0237941 RchiOBHm_Chr7g0237951 RchiOBHm_Chr7g0237971 RchiOBHm_Chr7g0238021
rosa_laevigata RLG00000000946 RLG00000000947 RLG00000000949 RLG00000017947
rosa_multiflora Rmu_co8087868.1_g000001 Rmu_co8407183.1_g000001 Rmu_co8459217.1_g000001 Rmu_sc0001339.1_g000020 Rmu_sc0002041.1_g000021 Rmu_sc0002586.1_g000009 Rmu_sc0002877.1_g000026 Rmu_sc0002877.1_g000032
rosa_roxburghii Rroxscaffold_2G00131800 Rroxscaffold_3G00223450 Rroxscaffold_3G00223470 Rroxscaffold_3G00223480
rosa_rugosa Rorug02G0178300 Rorug07G0309600 Rorug07G0309700.1 Rorug07G0309800.1 Rorug07G0309900.1 Rorug07G0310000 Rorug07G0310100
rosa_samantha Rh2AG230300 Rh2BG243500 Rh2DG238200 Rh7AG464600 Rh7AG464700 Rh7AG464900 Rh7BG435300 Rh7BG435600 Rh7CG482800 Rh7CG483100 Rh7CG483500 Rh7DG451500 Rh7DG451700 Rh7DG451800
rosa_wichuraiana Rw2G017840 Rw2G017890 Rw7G038490 Rw7G038500 Rw7G038510 Rw7G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1070
AciI CCGC 2 cut(s) 165, 1469
AclWI GGATC 1 cut(s) 1246
AcoI YGGCCR 3 cut(s) 223, 1230, 1398
AcsI RAATTY 2 cut(s) 803, 1347
AcuI CTGAAG 3 cut(s) 514, 644, 1176
AdeI CACNNNGTG 1 cut(s) 332
AfaI GTAC 2 cut(s) 377, 653
AfiI CCNNNNNNNGG 1 cut(s) 762
AgsI TTSAA 8 cut(s) 60, 73, 134, 457, 545, 782, 1211, 1385
AhlI ACTAGT 1 cut(s) 19
AjnI CCWGG 1 cut(s) 843
Alw21I GWGCWC 1 cut(s) 19
Alw44I GTGCAC 1 cut(s) 15
AlwI GGATC 1 cut(s) 1246
AlwNI CAGNNNCTG 1 cut(s) 983
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 7 cut(s) 223, 613, 793, 966, 1075, 1230, 1398
ApaLI GTGCAC 1 cut(s) 15
ApeKI GCWGC 4 cut(s) 248, 750, 821, 1278
ApoI RAATTY 2 cut(s) 803, 1347
Asp700I GAANNNNTTC 1 cut(s) 1146
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 19
BalI TGGCCA 1 cut(s) 1400
BanII GRGCYC 1 cut(s) 297
BbsI GAAGAC 1 cut(s) 716
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 4 cut(s) 235, 737, 808, 1265
BccI CCATC 4 cut(s) 260, 301, 1314, 1336
BceAI ACGGC 3 cut(s) 162, 1169, 1217
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BciT130I CCWGG 1 cut(s) 845
BcuI ACTAGT 1 cut(s) 19
BfaI CTAG 2 cut(s) 20, 1181
BfmI CTRYAG 2 cut(s) 566, 890
BglI GCCNNNNNGGC 1 cut(s) 231
BglII AGATCT 1 cut(s) 122
BisI GCNGC 4 cut(s) 249, 751, 822, 1279
BlsI GCNGC 4 cut(s) 250, 752, 823, 1280
Bme1390I CCNGG 1 cut(s) 845
Bme18I GGWCC 1 cut(s) 161
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 4 cut(s) 36, 163, 563, 1030
BmrFI CCNGG 1 cut(s) 845
BmrI ACTGGG 2 cut(s) 891, 1432
BmsI GCATC 2 cut(s) 904, 1406
BmuI ACTGGG 2 cut(s) 891, 1432
BpiI GAAGAC 1 cut(s) 716
BpmI CTGGAG 3 cut(s) 849, 866, 1005
BpuEI CTTGAG 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 1456
BsaJI CCNNGG 4 cut(s) 229, 507, 1233, 1333
BsaXI ACNNNNNCTCC 6 cut(s) 839, 869, 972, 978, 1002, 1008
Bsc4I CCNNNNNNNGG 1 cut(s) 762
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 3 cut(s) 886, 1214, 1427
Bse3DI GCAATG 1 cut(s) 551
BseBI CCWGG 1 cut(s) 845
BseDI CCNNGG 4 cut(s) 229, 507, 1233, 1333
BseGI GGATG 4 cut(s) 52, 312, 919, 1325
BseLI CCNNNNNNNGG 1 cut(s) 762
BseMI GCAATG 1 cut(s) 551
BseNI ACTGG 3 cut(s) 886, 1214, 1427
BseSI GKGCMC 1 cut(s) 19
BseXI GCAGC 4 cut(s) 235, 737, 808, 1265
BseYI CCCAGC 1 cut(s) 1013
BshFI GGCC 7 cut(s) 225, 615, 795, 968, 1077, 1232, 1400
BsiHKAI GWGCWC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 1 cut(s) 222
BslFI GGGAC 2 cut(s) 147, 1387
BslI CCNNNNNNNGG 1 cut(s) 762
BsmFI GGGAC 2 cut(s) 147, 1387
BsmI GAATGC 1 cut(s) 785
BsnI GGCC 7 cut(s) 225, 615, 795, 968, 1077, 1232, 1400
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 2 cut(s) 19, 297
Bsp1407I TGTACA 2 cut(s) 375, 651
Bsp143I GATC 4 cut(s) 122, 386, 1238, 1362
Bsp19I CCATGG 1 cut(s) 507
BspACI CCGC 2 cut(s) 165, 1469
BspANI GGCC 7 cut(s) 225, 615, 795, 968, 1077, 1232, 1400
BspHI TCATGA 1 cut(s) 513
BspLI GGNNCC 4 cut(s) 36, 163, 563, 1030
BspMAI CTGCAG 1 cut(s) 570
BspPI GGATC 1 cut(s) 1246
BsrDI GCAATG 1 cut(s) 551
BsrFI RCCGGY 1 cut(s) 221
BsrGI TGTACA 2 cut(s) 375, 651
BsrI ACTGG 3 cut(s) 886, 1214, 1427
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 4 cut(s) 229, 507, 1233, 1333
BssMI GATC 4 cut(s) 122, 386, 1238, 1362
BssT1I CCWWGG 2 cut(s) 507, 1333
Bst2UI CCWGG 1 cut(s) 845
Bst4CI ACNGT 4 cut(s) 14, 64, 1048, 1205
Bst6I CTCTTC 2 cut(s) 528, 1085
BstAPI GCANNNNNTGC 2 cut(s) 593, 905
BstAUI TGTACA 2 cut(s) 375, 651
BstBAI YACGTR 1 cut(s) 1456
BstC8I GCNNGC 7 cut(s) 223, 246, 339, 575, 1298, 1447, 1451
BstDSI CCRYGG 2 cut(s) 507, 1233
BstF5I GGATG 4 cut(s) 52, 312, 919, 1325
BstKTI GATC 4 cut(s) 125, 389, 1241, 1365
BstMBI GATC 4 cut(s) 122, 386, 1238, 1362
BstNI CCWGG 1 cut(s) 845
BstNSI RCATGY 4 cut(s) 367, 382, 629, 1453
BstSCI CCNGG 1 cut(s) 843
BstSFI CTRYAG 2 cut(s) 566, 890
BstSLI GKGCMC 1 cut(s) 19
BstV1I GCAGC 4 cut(s) 235, 737, 808, 1265
BstV2I GAAGAC 1 cut(s) 716
BstX2I RGATCY 2 cut(s) 122, 1238
BstYI RGATCY 2 cut(s) 122, 1238
BsuRI GGCC 7 cut(s) 225, 615, 795, 968, 1077, 1232, 1400
BtgI CCRYGG 2 cut(s) 507, 1233
BtsCI GGATG 4 cut(s) 52, 312, 919, 1325
BtsI GCAGTG 3 cut(s) 594, 627, 678
BtsIMutI CAGTG 6 cut(s) 19, 594, 627, 678, 1053, 1210
Cac8I GCNNGC 7 cut(s) 223, 246, 339, 575, 1298, 1447, 1451
CaiI CAGNNNCTG 1 cut(s) 983
CciI TCATGA 1 cut(s) 513
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 376, 652
CspCI CAANNNNNGTGG 2 cut(s) 463, 498
CviQI GTAC 2 cut(s) 376, 652
DpnI GATC 4 cut(s) 124, 388, 1240, 1364
DpnII GATC 4 cut(s) 122, 386, 1238, 1362
DraIII CACNNNGTG 1 cut(s) 332
EaeI YGGCCR 3 cut(s) 223, 1230, 1398
Eam1104I CTCTTC 2 cut(s) 528, 1085
EarI CTCTTC 2 cut(s) 528, 1085
Eco130I CCWWGG 2 cut(s) 507, 1333
Eco24I GRGCYC 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 161
Eco57I CTGAAG 3 cut(s) 514, 644, 1176
Eco88I CYCGRG 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 803
EcoRII CCWGG 1 cut(s) 843
EcoT14I CCWWGG 2 cut(s) 507, 1333
EcoT22I ATGCAT 1 cut(s) 932
EcoT38I GRGCYC 1 cut(s) 297
ErhI CCWWGG 2 cut(s) 507, 1333
FalI AAGNNNNNCTT 2 cut(s) 109, 141
FaqI GGGAC 2 cut(s) 147, 1387
FauI CCCGC 1 cut(s) 172
Fnu4HI GCNGC 4 cut(s) 249, 751, 822, 1279
FokI GGATG 4 cut(s) 59, 319, 926, 1332
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 4 cut(s) 249, 751, 822, 1279
FspBI CTAG 2 cut(s) 20, 1181
GluI GCNGC 4 cut(s) 249, 751, 822, 1279
GsaI CCCAGC 1 cut(s) 1017
GsuI CTGGAG 3 cut(s) 849, 866, 1005
HaeIII GGCC 7 cut(s) 225, 615, 795, 968, 1077, 1232, 1400
HapII CCGG 1 cut(s) 222
HindIII AAGCTT 2 cut(s) 339, 458
HinfI GANTC 5 cut(s) 134, 517, 831, 886, 958
HpaII CCGG 1 cut(s) 222
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 5 cut(s) 17, 80, 376, 652, 1142
Hpy188I TCNGA 3 cut(s) 68, 876, 1290
Hpy188III TCNNGA 4 cut(s) 256, 514, 828, 1093
Hpy8I GTNNAC 5 cut(s) 17, 80, 376, 652, 1142
HpyAV CCTTC 4 cut(s) 226, 979, 1018, 1184
HpyCH4III ACNGT 4 cut(s) 14, 64, 1048, 1205
HpyCH4IV ACGT 1 cut(s) 1455
HpySE526I ACGT 1 cut(s) 1455
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
Kzo9I GATC 4 cut(s) 122, 386, 1238, 1362
LmnI GCTCC 4 cut(s) 347, 980, 1010, 1028
Lsp1109I GCAGC 4 cut(s) 235, 737, 808, 1265
LweI GCATC 2 cut(s) 904, 1406
MaeI CTAG 2 cut(s) 20, 1181
MaeII ACGT 1 cut(s) 1455
MaeIII GTNAC 4 cut(s) 8, 731, 1057, 1186
MalI GATC 4 cut(s) 124, 388, 1240, 1364
MboI GATC 4 cut(s) 122, 386, 1238, 1362
MboII GAAGA 6 cut(s) 410, 413, 515, 716, 1072, 1318
MflI RGATCY 2 cut(s) 122, 1238
MhlI GDGCHC 2 cut(s) 19, 297
MlsI TGGCCA 1 cut(s) 1400
MluCI AATT 9 cut(s) 545, 684, 803, 850, 870, 1071, 1191, 1347, 1410
MluNI TGGCCA 1 cut(s) 1400
MlyI GAGTC 1 cut(s) 840
MmeI TCCRAC 1 cut(s) 24
Mox20I TGGCCA 1 cut(s) 1400
Mph1103I ATGCAT 1 cut(s) 932
MroNI GCCGGC 1 cut(s) 221
MroXI GAANNNNTTC 1 cut(s) 1146
MscI TGGCCA 1 cut(s) 1400
MseI TTAA 1 cut(s) 1313
MslI CAYNNNNRTG 2 cut(s) 87, 512
Msp20I TGGCCA 1 cut(s) 1400
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 845
Mva1269I GAATGC 1 cut(s) 785
MvaI CCWGG 1 cut(s) 845
NaeI GCCGGC 1 cut(s) 223
NcoI CCATGG 1 cut(s) 507
NdeII GATC 4 cut(s) 122, 386, 1238, 1362
NgoMIV GCCGGC 1 cut(s) 221
NlaIV GGNNCC 4 cut(s) 36, 163, 563, 1030
NmeAIII GCCGAG 1 cut(s) 210
NmuCI GTSAC 2 cut(s) 1057, 1186
NsiI ATGCAT 1 cut(s) 932
NspI RCATGY 4 cut(s) 367, 382, 629, 1453
PaeI GCATGC 1 cut(s) 1453
PaeR7I CTCGAG 1 cut(s) 239
PagI TCATGA 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PctI GAATGC 1 cut(s) 785
PdiI GCCGGC 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 1146
PfeI GAWTC 4 cut(s) 134, 517, 886, 958
PkrI GCNGC 4 cut(s) 250, 752, 823, 1280
PleI GAGTC 1 cut(s) 839
PpsI GAGTC 1 cut(s) 839
Ppu21I YACGTR 1 cut(s) 1456
PsiI TTATAA 1 cut(s) 1070
Psp6I CCWGG 1 cut(s) 843
PspFI CCCAGC 1 cut(s) 1013
PspGI CCWGG 1 cut(s) 843
PspN4I GGNNCC 4 cut(s) 36, 163, 563, 1030
PspPI GGNCC 1 cut(s) 161
PspXI VCTCGAGB 1 cut(s) 239
PstI CTGCAG 1 cut(s) 570
PstNI CAGNNNCTG 1 cut(s) 983
PsuI RGATCY 2 cut(s) 122, 1238
RsaI GTAC 2 cut(s) 377, 653
RsaNI GTAC 2 cut(s) 376, 652
RseI CAYNNNNRTG 2 cut(s) 87, 512
SaqAI TTAA 1 cut(s) 1313
SatI GCNGC 4 cut(s) 249, 751, 822, 1279
Sau3AI GATC 4 cut(s) 122, 386, 1238, 1362
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 1 cut(s) 840
ScrFI CCNGG 1 cut(s) 845
SduI GDGCHC 2 cut(s) 19, 297
SfaNI GCATC 2 cut(s) 904, 1406
SfcI CTRYAG 2 cut(s) 566, 890
Sfr274I CTCGAG 1 cut(s) 239
SinI GGWCC 1 cut(s) 161
SlaI CTCGAG 1 cut(s) 239
SmiMI CAYNNNNRTG 2 cut(s) 87, 512
SmlI CTYRAG 2 cut(s) 99, 239
SmoI CTYRAG 2 cut(s) 99, 239
SpeI ACTAGT 1 cut(s) 19
SphI GCATGC 1 cut(s) 1453
Sse9I AATT 9 cut(s) 545, 684, 803, 850, 870, 1071, 1191, 1347, 1410
SsiI CCGC 2 cut(s) 165, 1469
SspMI CTAG 2 cut(s) 20, 1181
StyD4I CCNGG 1 cut(s) 843
StyI CCWWGG 2 cut(s) 507, 1333
TaaI ACNGT 4 cut(s) 14, 64, 1048, 1205
TaiI ACGT 1 cut(s) 1458
TaqI TCGA 4 cut(s) 240, 257, 285, 1414
TasI AATT 9 cut(s) 545, 684, 803, 850, 870, 1071, 1191, 1347, 1410
TatI WGTACW 2 cut(s) 375, 651
TfiI GAWTC 4 cut(s) 134, 517, 886, 958
Tru1I TTAA 1 cut(s) 1313
Tru9I TTAA 1 cut(s) 1313
TscAI CASTG 6 cut(s) 19, 594, 627, 685, 1053, 1210
TseFI GTSAC 2 cut(s) 1057, 1186
TseI GCWGC 4 cut(s) 248, 750, 821, 1278
Tsp45I GTSAC 2 cut(s) 1057, 1186
TspDTI ATGAA 1 cut(s) 108
TspRI CASTG 6 cut(s) 19, 594, 627, 685, 1053, 1210
VneI GTGCAC 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 2 cut(s) 803, 1347
XceI RCATGY 4 cut(s) 367, 382, 629, 1453
XhoI CTCGAG 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 1146
XspI CTAG 2 cut(s) 20, 1181
Zsp2I ATGCAT 1 cut(s) 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.