FvH4_1g20090

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000476
Physical Location & Seq
Forward (+)
12269195 .. 12279784
10590 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20090.t5

Sequence Viewer

Length: 1038 bp
ATGCCCGATAATACAAACAGTAGTGCGTTAGCGGAAGCAGAGGCTCCGTTGTTGGCGGCGTACTCAGCTTCAGACGACGTCGGTTTAAAACACGAACGTCACAATGTTGAGCTCATTGATGAAGATGACGATCAACGTCTTGGAAGGAGAGTCTGGATTGAATCAAAGAAGCTTTGGCACATAGTCGGTCCGGCTATCTTTAGCCGTGTCGCCTCCTATTCCATGGTGGTCATCACCCAAGCTTTCGCCGGCCACCTCGGCGAACTAGAGCTCGCCGCAATCTCCATCGCCAACAATGTCATCGTCGGTTTCGATTTAGGCCTCTTGTTAGGAATGGCGAGTGCTTTGGAAACACTATGTGGGCAAGCTTATGGTGCCAAGAAGTACTATATGCTTGGAGTGTACATGCAACGCTCACGGATAGTTCTCTTCTTGTGTTGTATTCTCCTCCTGCCGCTCTACCTCTTCGCCTCGCCGTTCCTAAAGGTTTTAGGTCAGCCAACAGACGTGGCCGAGCTCTGTGGGCTTGTGTCCATGACCATGATACCGATTCACTTCAGCTTCAGCTTTCAGTTCCCGCTGCAGAGGTTCCTACAGAGCCAGTTGAAGACTGGTGTGATTGCTTGGGTGTCTCTGGTGGCTCTTATTTTCCATATCTTTGTGAGTTGGTTCTTTGTGTACAGGCTTGAGCTTGGAGTGATCGGAACCGCCGTTACCTTGAGCCTTTCGTGGTGGGTGTTAACTTTTGGGCTTTTCTTTTACACTATATGCGGTGGCTGTCCTTTAACTTGGAGTGGATTCTCCATTGAAGCGTTTTCTGGTCTTTGGGAGTTCATCAAACTCTCTGCTGCTTCTGGAGTTATGCTCTGCCTGGAGAATTGGTATTATAGAATACTAATACTGATGACAGGAAATCTGCAAAATGCAAAGATTGCTGTGGATGCTTTGTCTATATGCATGACCATAAACGGCTGGGAGATGATGATTCCTCTGGCTTTCTTCGCTGCAACTGGTCTGCAGAGTTCGGGTTGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

346

Amino Acids

38.27

Weight (kDa)

5.51

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 64 - 223 1.8e-28 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10420 AT5G44050 AT5G65380
fragaria_vesca FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36170 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_7g30730 FvH4_7g30730
malus_domestica MD01G1032800.v1.1 MD08G1190900.v1.1 MD08G1191000.v1.1 MD15G1378200.v1.1 MD15G1378900.v1.1 MD15G1379100.v1.1
prunus_persica Prupe.1G524800_v2.0.a1 Prupe.1G525000_v2.0.a1 Prupe.1G525200_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.6G195500_v2.0.a1
pyrus_communis pycom01g06450 pycom08g16390 pycom15g33900 pycom15g33930 pycom15g33950
rosa_chinensis RchiOBHm_Chr2g0112071 RchiOBHm_Chr7g0237941 RchiOBHm_Chr7g0237951 RchiOBHm_Chr7g0237971 RchiOBHm_Chr7g0238021
rosa_laevigata RLG00000000946 RLG00000000947 RLG00000000949 RLG00000017947
rosa_multiflora Rmu_co8087868.1_g000001 Rmu_co8407183.1_g000001 Rmu_co8459217.1_g000001 Rmu_sc0001339.1_g000020 Rmu_sc0002041.1_g000021 Rmu_sc0002586.1_g000009 Rmu_sc0002877.1_g000026 Rmu_sc0002877.1_g000032
rosa_roxburghii Rroxscaffold_2G00131800 Rroxscaffold_3G00223450 Rroxscaffold_3G00223470 Rroxscaffold_3G00223480
rosa_rugosa Rorug02G0178300 Rorug07G0309600 Rorug07G0309700.1 Rorug07G0309800.1 Rorug07G0309900.1 Rorug07G0310000 Rorug07G0310100
rosa_samantha Rh2AG230300 Rh2BG243500 Rh2DG238200 Rh7AG464600 Rh7AG464700 Rh7AG464900 Rh7BG435300 Rh7BG435600 Rh7CG482800 Rh7CG483100 Rh7CG483500 Rh7DG451500 Rh7DG451700 Rh7DG451800
rosa_wichuraiana Rw2G017840 Rw2G017890 Rw7G038490 Rw7G038500 Rw7G038510 Rw7G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
AccB1I GGYRCC 1 cut(s) 374
AccBSI CCGCTC 1 cut(s) 457
AciI CCGC 7 cut(s) 32, 56, 276, 455, 578, 708, 771
AcoI YGGCCR 2 cut(s) 250, 510
AcuI CTGAAG 3 cut(s) 54, 541, 547
AcyI GRCGYC 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 359
AfaI GTAC 4 cut(s) 62, 386, 404, 680
AgsI TTSAA 3 cut(s) 161, 607, 809
AjiI CACGTC 1 cut(s) 508
AjnI CCWGG 1 cut(s) 870
Alw21I GWGCWC 3 cut(s) 114, 273, 519
Alw26I GTCTC 1 cut(s) 636
AoxI GGCC 3 cut(s) 250, 319, 510
ApeKI GCWGC 3 cut(s) 580, 848, 1004
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 226
AvaII GGWCC 1 cut(s) 188
BanI GGYRCC 1 cut(s) 374
BanII GRGCYC 3 cut(s) 114, 273, 519
BbsI GAAGAC 1 cut(s) 614
Bbv12I GWGCWC 3 cut(s) 114, 273, 519
BbvI GCAGC 3 cut(s) 567, 835, 991
BccI CCATC 1 cut(s) 293
BceAI ACGGC 4 cut(s) 189, 460, 695, 985
BciT130I CCWGG 1 cut(s) 872
BcoDI GTCTC 1 cut(s) 636
BfaI CTAG 2 cut(s) 266, 1036
BfmI CTRYAG 3 cut(s) 581, 593, 1016
BglI GCCNNNNNGGC 1 cut(s) 258
BisI GCNGC 6 cut(s) 57, 276, 455, 581, 849, 1005
BlsI GCNGC 6 cut(s) 58, 277, 456, 582, 850, 1006
BmcAI AGTACT 1 cut(s) 386
Bme1390I CCNGG 1 cut(s) 872
Bme18I GGWCC 1 cut(s) 188
BmgBI CACGTC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 4 cut(s) 45, 376, 590, 706
BmrFI CCNGG 1 cut(s) 872
BmsI GCATC 1 cut(s) 931
BpiI GAAGAC 1 cut(s) 614
BplI GAGNNNNNCTC 2 cut(s) 849, 881
BpmI CTGGAG 2 cut(s) 876, 893
BpuEI CTTGAG 2 cut(s) 707, 739
BsaBI GATNNNNATC 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 222, 256
BsaXI ACNNNNNCTCC 2 cut(s) 866, 896
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 3 cut(s) 601, 616, 1015
Bse8I GATNNNNATC 1 cut(s) 129
BseBI CCWGG 1 cut(s) 872
BseDI CCNNGG 2 cut(s) 222, 256
BseGI GGATG 1 cut(s) 946
BseJI GATNNNNATC 1 cut(s) 129
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 3 cut(s) 601, 616, 1015
BseRI GAGGAG 1 cut(s) 437
BseXI GCAGC 3 cut(s) 567, 835, 991
BseYI CCCAGC 1 cut(s) 972
BshFI GGCC 3 cut(s) 252, 321, 512
BshNI GGYRCC 1 cut(s) 374
BsiHKAI GWGCWC 3 cut(s) 114, 273, 519
BsiSI CCGG 2 cut(s) 191, 249
BsmAI GTCTC 1 cut(s) 636
BsnI GGCC 3 cut(s) 252, 321, 512
Bsp1286I GDGCHC 3 cut(s) 114, 273, 519
Bsp1407I TGTACA 2 cut(s) 402, 678
Bsp143I GATC 3 cut(s) 130, 699, 1032
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 7 cut(s) 32, 56, 276, 455, 578, 708, 771
BspANI GGCC 3 cut(s) 252, 321, 512
BspCNI CTCAG 1 cut(s) 77
BspLI GGNNCC 4 cut(s) 45, 376, 590, 706
BspMAI CTGCAG 2 cut(s) 585, 1020
BspT107I GGYRCC 1 cut(s) 374
BsrBI CCGCTC 1 cut(s) 457
BsrFI RCCGGY 1 cut(s) 248
BsrGI TGTACA 2 cut(s) 402, 678
BsrI ACTGG 3 cut(s) 601, 616, 1015
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 222, 256
BssMI GATC 3 cut(s) 130, 699, 1032
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 872
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 2 cut(s) 434, 470
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 932
BstAUI TGTACA 2 cut(s) 402, 678
BstC8I GCNNGC 3 cut(s) 250, 273, 366
BstDEI CTNAG 1 cut(s) 64
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 946
BstKTI GATC 3 cut(s) 133, 702, 1035
BstMAI GTCTC 1 cut(s) 636
BstMBI GATC 3 cut(s) 130, 699, 1032
BstMWI GCNNNNNNNGC 7 cut(s) 65, 258, 374, 523, 932, 941, 1001
BstNI CCWGG 1 cut(s) 872
BstNSI RCATGY 1 cut(s) 409
BstSCI CCNGG 1 cut(s) 870
BstSFI CTRYAG 3 cut(s) 581, 593, 1016
BstV1I GCAGC 3 cut(s) 567, 835, 991
BstV2I GAAGAC 1 cut(s) 614
BstX2I RGATCY 1 cut(s) 1032
BstYI RGATCY 1 cut(s) 1032
BsuRI GGCC 3 cut(s) 252, 321, 512
BtgI CCRYGG 1 cut(s) 222
BtgZI GCGATG 1 cut(s) 271
BtrI CACGTC 1 cut(s) 508
BtsCI GGATG 1 cut(s) 946
Cac8I GCNNGC 3 cut(s) 250, 273, 366
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 188
CpoI CGGWCCG 1 cut(s) 188
Csp6I GTAC 4 cut(s) 61, 385, 403, 679
CspCI CAANNNNNGTGG 2 cut(s) 489, 524
CspI CGGWCCG 1 cut(s) 188
CviAII CATG 5 cut(s) 223, 406, 535, 541, 958
CviQI GTAC 4 cut(s) 61, 385, 403, 679
DdeI CTNAG 1 cut(s) 64
DpnI GATC 3 cut(s) 132, 701, 1034
DpnII GATC 3 cut(s) 130, 699, 1032
DraI TTTAAA 1 cut(s) 87
DraIII CACNNNGTG 1 cut(s) 359
EaeI YGGCCR 2 cut(s) 250, 510
Eam1104I CTCTTC 2 cut(s) 434, 470
EarI CTCTTC 2 cut(s) 434, 470
Ecl136II GAGCTC 3 cut(s) 112, 271, 517
Eco130I CCWWGG 1 cut(s) 222
Eco147I AGGCCT 1 cut(s) 321
Eco24I GRGCYC 3 cut(s) 114, 273, 519
Eco47I GGWCC 1 cut(s) 188
Eco53kI GAGCTC 3 cut(s) 112, 271, 517
Eco57I CTGAAG 3 cut(s) 54, 541, 547
EcoICRI GAGCTC 3 cut(s) 112, 271, 517
EcoRII CCWGG 1 cut(s) 870
EcoT14I CCWWGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 959
EcoT38I GRGCYC 3 cut(s) 114, 273, 519
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 5 cut(s) 226, 409, 538, 544, 961
FatI CATG 5 cut(s) 222, 405, 534, 540, 957
FauI CCCGC 1 cut(s) 585
Fnu4HI GCNGC 6 cut(s) 57, 276, 455, 581, 849, 1005
FokI GGATG 1 cut(s) 953
FriOI GRGCYC 3 cut(s) 114, 273, 519
Fsp4HI GCNGC 6 cut(s) 57, 276, 455, 581, 849, 1005
FspBI CTAG 2 cut(s) 266, 1036
GluI GCNGC 6 cut(s) 57, 276, 455, 581, 849, 1005
GsaI CCCAGC 1 cut(s) 976
GsuI CTGGAG 2 cut(s) 876, 893
HaeIII GGCC 3 cut(s) 252, 321, 512
HapII CCGG 2 cut(s) 191, 249
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 5 cut(s) 226, 409, 538, 544, 961
HincII GTYRAC 1 cut(s) 741
HindII GTYRAC 1 cut(s) 741
HindIII AAGCTT 3 cut(s) 170, 240, 366
HinfI GANTC 5 cut(s) 150, 161, 550, 798, 985
HpaI GTTAAC 1 cut(s) 741
HpaII CCGG 2 cut(s) 191, 249
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 3 cut(s) 403, 679, 741
Hpy188I TCNGA 2 cut(s) 73, 704
Hpy188III TCNNGA 2 cut(s) 154, 855
Hpy8I GTNNAC 3 cut(s) 403, 679, 741
Hpy99I CGWCG 3 cut(s) 80, 83, 308
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 4 cut(s) 78, 97, 136, 507
HpyCH4V TGCA 7 cut(s) 409, 583, 919, 926, 957, 1007, 1018
HpyF10VI GCNNNNNNNGC 7 cut(s) 65, 258, 374, 523, 932, 941, 1001
HpyF3I CTNAG 1 cut(s) 64
HpySE526I ACGT 4 cut(s) 78, 97, 136, 507
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 5 cut(s) 226, 409, 538, 544, 961
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
KspAI GTTAAC 1 cut(s) 741
Kzo9I GATC 3 cut(s) 130, 699, 1032
LmnI GCTCC 1 cut(s) 49
Lsp1109I GCAGC 3 cut(s) 567, 835, 991
LweI GCATC 1 cut(s) 931
MaeI CTAG 2 cut(s) 266, 1036
MaeII ACGT 4 cut(s) 78, 97, 136, 507
MaeIII GTNAC 2 cut(s) 98, 712
MalI GATC 3 cut(s) 132, 701, 1034
MbiI CCGCTC 1 cut(s) 457
MboI GATC 3 cut(s) 130, 699, 1032
MboII GAAGA 5 cut(s) 134, 421, 457, 619, 991
MflI RGATCY 1 cut(s) 1032
MhlI GDGCHC 3 cut(s) 114, 273, 519
MluCI AATT 1 cut(s) 877
MlyI GAGTC 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 1010
MnlI CCTC 9 cut(s) 34, 223, 266, 332, 458, 473, 481, 579, 999
Mph1103I ATGCAT 1 cut(s) 959
MroNI GCCGGC 1 cut(s) 248
MseI TTAA 3 cut(s) 86, 740, 785
MslI CAYNNNNRTG 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 580
MspI CCGG 2 cut(s) 191, 249
MspR9I CCNGG 1 cut(s) 872
MvaI CCWGG 1 cut(s) 872
MwoI GCNNNNNNNGC 7 cut(s) 65, 258, 374, 523, 932, 941, 1001
NaeI GCCGGC 1 cut(s) 250
NcoI CCATGG 1 cut(s) 222
NdeII GATC 3 cut(s) 130, 699, 1032
NgoMIV GCCGGC 1 cut(s) 248
NlaIII CATG 5 cut(s) 226, 409, 538, 544, 961
NlaIV GGNNCC 4 cut(s) 45, 376, 590, 706
NmeAIII GCCGAG 2 cut(s) 237, 538
NmuCI GTSAC 1 cut(s) 98
NsiI ATGCAT 1 cut(s) 959
NspI RCATGY 1 cut(s) 409
PceI AGGCCT 1 cut(s) 321
PcsI WCGNNNNNNNCGW 2 cut(s) 309, 708
PdiI GCCGGC 1 cut(s) 250
PfeI GAWTC 4 cut(s) 161, 550, 798, 985
PflFI GACNNNGTC 1 cut(s) 77
PkrI GCNGC 6 cut(s) 58, 277, 456, 582, 850, 1006
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
Psp124BI GAGCTC 3 cut(s) 114, 273, 519
Psp6I CCWGG 1 cut(s) 870
PspFI CCCAGC 1 cut(s) 972
PspGI CCWGG 1 cut(s) 870
PspN4I GGNNCC 4 cut(s) 45, 376, 590, 706
PspPI GGNCC 1 cut(s) 188
PsrI GAACNNNNNNTAC 2 cut(s) 697, 729
PstI CTGCAG 2 cut(s) 585, 1020
PsuI RGATCY 1 cut(s) 1032
PsyI GACNNNGTC 1 cut(s) 77
RsaI GTAC 4 cut(s) 62, 386, 404, 680
RsaNI GTAC 4 cut(s) 61, 385, 403, 679
RseI CAYNNNNRTG 1 cut(s) 539
Rsr2I CGGWCCG 1 cut(s) 188
RsrII CGGWCCG 1 cut(s) 188
SacI GAGCTC 3 cut(s) 114, 273, 519
SaqAI TTAA 3 cut(s) 86, 740, 785
SatI GCNGC 6 cut(s) 57, 276, 455, 581, 849, 1005
Sau3AI GATC 3 cut(s) 130, 699, 1032
Sau96I GGNCC 1 cut(s) 188
ScaI AGTACT 1 cut(s) 386
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 872
SduI GDGCHC 3 cut(s) 114, 273, 519
SfaNI GCATC 1 cut(s) 931
SfcI CTRYAG 3 cut(s) 581, 593, 1016
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 2 cut(s) 686, 718
SmoI CTYRAG 2 cut(s) 686, 718
Sse9I AATT 1 cut(s) 877
SseBI AGGCCT 1 cut(s) 321
SsiI CCGC 7 cut(s) 32, 56, 276, 455, 578, 708, 771
SspMI CTAG 2 cut(s) 266, 1036
SstI GAGCTC 3 cut(s) 114, 273, 519
StuI AGGCCT 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 870
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 4 cut(s) 81, 100, 139, 510
TaqI TCGA 1 cut(s) 312
TaqII GACCGA 1 cut(s) 176
TasI AATT 1 cut(s) 877
TatI WGTACW 3 cut(s) 384, 402, 678
TauI GCSGC 3 cut(s) 59, 278, 457
TfiI GAWTC 4 cut(s) 161, 550, 798, 985
Tru1I TTAA 3 cut(s) 86, 740, 785
Tru9I TTAA 3 cut(s) 86, 740, 785
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 3 cut(s) 580, 848, 1004
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 135, 823
TspGWI ACGGA 2 cut(s) 36, 433
Tth111I GACNNNGTC 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 188
XceI RCATGY 1 cut(s) 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 608
XspI CTAG 2 cut(s) 266, 1036
ZraI GACGTC 1 cut(s) 79
ZrmI AGTACT 1 cut(s) 386
Zsp2I ATGCAT 1 cut(s) 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.