Rmu_co8459217.1_g000001

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8459217.1
Physical Location & Seq
Reverse (-)
1 .. 1552
1552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8459217.1_g000001.1.cds

Sequence Viewer

Length: 977 bp
atggaagcagaggctccgttgttggcggagtactcggcttcagacgtcggtttaaaacacgaaaatcacgatgttgagctcattgatgaagataatcaacgtcttggaaggagagtctggattgaatcaacgaagctttggcacatagtcggtcctgcaatctttagccgtgtggcctcctattccatgctggtgatcacccaagcttttgccggccacctcggcgacttagagctcgccgcaatctccattgccaataatgtcatcgttggtttcgatttcggcctcttgttgggaatggcgagtgctttggaaacactgtgtgggcaggcttttggtgcgaagaagtactatatgcttggagtgtacatgcaacgctcatggatagttctcttcttgtgttgtattctccttctaccgctctacctcttcgcctcgcctgtcctaaagctattaggccaaccgaccgacgtggccgagctctgtgggattgtgtccatggccatgataccgcttcacttcagcttcgcatttcagttcccgctgcagaggttcttgcagagccagctgaagacgggtgtgattgcctgggtgtctctggcggctctgattgttcatatctttgtgagttggttctttgtgtataggcttgagcttggagtggtcggaactgccatcaccttgaatttttcgtggtgggttttgactttcgggcttttcttttacactatttgtggtggctgtcctataacatggggtggattctccatcgaagcgttttctggtctttgggagttcatcaaactctctgctgcttctggagttatgctctgcctggagaattggtattatagaatactgatactgatgactggaaatctacaaaatgcaaagattgccgtggatgctttgtctatatgcatgaccattaacggctgggagttgatgattcctctggctttcttcgctgcaactgg
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

326

Amino Acids

36.19

Weight (kDa)

5.34

Isoelectric Point (pI)

30.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10420 AT5G44050 AT5G65380
fragaria_vesca FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36170 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_7g30730 FvH4_7g30730
malus_domestica MD01G1032800.v1.1 MD08G1190900.v1.1 MD08G1191000.v1.1 MD15G1378200.v1.1 MD15G1378900.v1.1 MD15G1379100.v1.1
prunus_persica Prupe.1G524800_v2.0.a1 Prupe.1G525000_v2.0.a1 Prupe.1G525200_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.6G195500_v2.0.a1
pyrus_communis pycom01g06450 pycom08g16390 pycom15g33900 pycom15g33930 pycom15g33950
rosa_chinensis RchiOBHm_Chr2g0112071 RchiOBHm_Chr7g0237941 RchiOBHm_Chr7g0237951 RchiOBHm_Chr7g0237971 RchiOBHm_Chr7g0238021
rosa_laevigata RLG00000000946 RLG00000000947 RLG00000000949 RLG00000017947
rosa_multiflora Rmu_co8087868.1_g000001 Rmu_co8407183.1_g000001 Rmu_co8459217.1_g000001 Rmu_sc0001339.1_g000020 Rmu_sc0002041.1_g000021 Rmu_sc0002586.1_g000009 Rmu_sc0002877.1_g000026 Rmu_sc0002877.1_g000032
rosa_roxburghii Rroxscaffold_2G00131800 Rroxscaffold_3G00223450 Rroxscaffold_3G00223470 Rroxscaffold_3G00223480
rosa_rugosa Rorug02G0178300 Rorug07G0309600 Rorug07G0309700.1 Rorug07G0309800.1 Rorug07G0309900.1 Rorug07G0310000 Rorug07G0310100
rosa_samantha Rh2AG230300 Rh2BG243500 Rh2DG238200 Rh7AG464600 Rh7AG464700 Rh7AG464900 Rh7BG435300 Rh7BG435600 Rh7CG482800 Rh7CG483100 Rh7CG483500 Rh7DG451500 Rh7DG451700 Rh7DG451800
rosa_wichuraiana Rw2G017840 Rw2G017890 Rw7G038490 Rw7G038500 Rw7G038510 Rw7G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 48
AccBSI CCGCTC 1 cut(s) 421
AciI CCGC 6 cut(s) 26, 240, 419, 512, 542, 602
AcoI YGGCCR 3 cut(s) 214, 474, 501
AcsI RAATTY 1 cut(s) 685
AcuI CTGAAG 3 cut(s) 24, 505, 590
AcyI GRCGYC 1 cut(s) 45
AdeI CACNNNGTG 1 cut(s) 323
AfaI GTAC 3 cut(s) 32, 350, 368
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 2 cut(s) 125, 685
AjiI CACGTC 1 cut(s) 472
AjnI CCWGG 2 cut(s) 587, 834
AluBI AGCT 9 cut(s) 79, 136, 206, 235, 451, 481, 525, 568, 655
AluI AGCT 9 cut(s) 79, 136, 206, 235, 451, 481, 525, 568, 655
Alw21I GWGCWC 3 cut(s) 81, 237, 483
Alw26I GTCTC 1 cut(s) 600
AoxI GGCC 6 cut(s) 174, 214, 283, 457, 474, 501
ApeKI GCWGC 3 cut(s) 544, 812, 968
ApoI RAATTY 1 cut(s) 685
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 3 cut(s) 190, 205, 670
AvaII GGWCC 1 cut(s) 152
BalI TGGCCA 1 cut(s) 503
BanII GRGCYC 3 cut(s) 81, 237, 483
BbsI GAAGAC 1 cut(s) 578
Bbv12I GWGCWC 3 cut(s) 81, 237, 483
BbvI GCAGC 3 cut(s) 531, 799, 955
BccI CCATC 2 cut(s) 683, 776
BceAI ACGGC 3 cut(s) 153, 884, 949
BciT130I CCWGG 2 cut(s) 589, 836
BclI TGATCA 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 600
BfmI CTRYAG 1 cut(s) 545
BglI GCCNNNNNGGC 1 cut(s) 222
BisI GCNGC 5 cut(s) 240, 545, 603, 813, 969
BlsI GCNGC 5 cut(s) 241, 546, 604, 814, 970
BmcAI AGTACT 2 cut(s) 32, 350
Bme1390I CCNGG 2 cut(s) 589, 836
Bme18I GGWCC 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 472
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 2 cut(s) 589, 836
BmsI GCATC 1 cut(s) 895
BpiI GAAGAC 1 cut(s) 578
BplI GAGNNNNNCTC 2 cut(s) 813, 845
BpmI CTGGAG 2 cut(s) 840, 857
BpuEI CTTGAG 1 cut(s) 671
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 4 cut(s) 220, 498, 588, 900
BsaXI ACNNNNNCTCC 2 cut(s) 830, 860
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 877
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 2 cut(s) 589, 836
BseDI CCNNGG 4 cut(s) 220, 498, 588, 900
BseGI GGATG 1 cut(s) 910
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMI GCAATG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 877
BseXI GCAGC 3 cut(s) 531, 799, 955
BseYI CCCAGC 1 cut(s) 936
Bsh1285I CGRYCG 1 cut(s) 468
BshFI GGCC 6 cut(s) 176, 216, 285, 459, 476, 503
BsiEI CGRYCG 1 cut(s) 468
BsiHKAI GWGCWC 3 cut(s) 81, 237, 483
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 1 cut(s) 600
BsnI GGCC 6 cut(s) 176, 216, 285, 459, 476, 503
Bsp1286I GDGCHC 3 cut(s) 81, 237, 483
Bsp1407I TGTACA 1 cut(s) 366
Bsp143I GATC 1 cut(s) 195
Bsp19I CCATGG 1 cut(s) 498
BspACI CCGC 6 cut(s) 26, 240, 419, 512, 542, 602
BspANI GGCC 6 cut(s) 176, 216, 285, 459, 476, 503
BspLI GGNNCC 1 cut(s) 15
BspMAI CTGCAG 1 cut(s) 549
BsrBI CCGCTC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 212
BsrGI TGTACA 1 cut(s) 366
BsrI ACTGG 1 cut(s) 877
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 4 cut(s) 220, 498, 588, 900
BssMI GATC 1 cut(s) 195
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 498
Bst2UI CCWGG 2 cut(s) 589, 836
Bst4CI ACNGT 1 cut(s) 321
Bst6I CTCTTC 2 cut(s) 398, 434
BstACI GRCGYC 1 cut(s) 45
BstAPI GCANNNNNTGC 1 cut(s) 896
BstAUI TGTACA 1 cut(s) 366
BstC8I GCNNGC 4 cut(s) 214, 237, 330, 566
BstDEI CTNAG 1 cut(s) 229
BstDSI CCRYGG 2 cut(s) 498, 900
BstF5I GGATG 1 cut(s) 910
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 600
BstMBI GATC 1 cut(s) 195
BstMCI CGRYCG 1 cut(s) 468
BstMWI GCNNNNNNNGC 6 cut(s) 222, 338, 565, 896, 905, 965
BstNI CCWGG 2 cut(s) 589, 836
BstNSI RCATGY 1 cut(s) 373
BstSCI CCNGG 2 cut(s) 587, 834
BstSFI CTRYAG 1 cut(s) 545
BstV1I GCAGC 3 cut(s) 531, 799, 955
BstV2I GAAGAC 1 cut(s) 578
BsuRI GGCC 6 cut(s) 176, 216, 285, 459, 476, 503
BtgI CCRYGG 2 cut(s) 498, 900
BtrI CACGTC 1 cut(s) 472
BtsCI GGATG 1 cut(s) 910
BtsIMutI CAGTG 1 cut(s) 317
Cac8I GCNNGC 4 cut(s) 214, 237, 330, 566
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 3 cut(s) 31, 349, 367
CviAII CATG 7 cut(s) 187, 370, 381, 499, 505, 753, 922
CviQI GTAC 3 cut(s) 31, 349, 367
DdeI CTNAG 1 cut(s) 229
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
DraI TTTAAA 1 cut(s) 54
DraIII CACNNNGTG 1 cut(s) 323
EaeI YGGCCR 3 cut(s) 214, 474, 501
Eam1104I CTCTTC 2 cut(s) 398, 434
EarI CTCTTC 2 cut(s) 398, 434
EciI GGCGGA 1 cut(s) 41
Ecl136II GAGCTC 3 cut(s) 79, 235, 481
Eco130I CCWWGG 1 cut(s) 498
Eco24I GRGCYC 3 cut(s) 81, 237, 483
Eco47I GGWCC 1 cut(s) 152
Eco53kI GAGCTC 3 cut(s) 79, 235, 481
Eco57I CTGAAG 3 cut(s) 24, 505, 590
EcoICRI GAGCTC 3 cut(s) 79, 235, 481
EcoRII CCWGG 2 cut(s) 587, 834
EcoT14I CCWWGG 1 cut(s) 498
EcoT22I ATGCAT 1 cut(s) 923
EcoT38I GRGCYC 3 cut(s) 81, 237, 483
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 7 cut(s) 190, 373, 384, 502, 508, 756, 925
FatI CATG 7 cut(s) 186, 369, 380, 498, 504, 752, 921
FauI CCCGC 1 cut(s) 549
FbaI TGATCA 1 cut(s) 195
Fnu4HI GCNGC 5 cut(s) 240, 545, 603, 813, 969
FokI GGATG 1 cut(s) 917
FriOI GRGCYC 3 cut(s) 81, 237, 483
Fsp4HI GCNGC 5 cut(s) 240, 545, 603, 813, 969
GluI GCNGC 5 cut(s) 240, 545, 603, 813, 969
GsaI CCCAGC 1 cut(s) 940
GsuI CTGGAG 2 cut(s) 840, 857
HaeIII GGCC 6 cut(s) 176, 216, 285, 459, 476, 503
HapII CCGG 1 cut(s) 213
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 7 cut(s) 190, 373, 384, 502, 508, 756, 925
HindIII AAGCTT 2 cut(s) 134, 204
HinfI GANTC 4 cut(s) 114, 125, 762, 949
HpaII CCGG 1 cut(s) 213
HphI GGTGA 3 cut(s) 190, 205, 670
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 3 cut(s) 43, 609, 668
Hpy188III TCNNGA 3 cut(s) 68, 118, 819
Hpy8I GTNNAC 1 cut(s) 367
Hpy99I CGWCG 2 cut(s) 50, 473
HpyAV CCTTC 2 cut(s) 102, 422
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4IV ACGT 3 cut(s) 45, 100, 471
HpyCH4V TGCA 7 cut(s) 158, 373, 547, 559, 890, 921, 971
HpyF10VI GCNNNNNNNGC 6 cut(s) 222, 338, 565, 896, 905, 965
HpyF3I CTNAG 1 cut(s) 229
HpySE526I ACGT 3 cut(s) 45, 100, 471
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 7 cut(s) 190, 373, 384, 502, 508, 756, 925
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 3 cut(s) 531, 799, 955
LweI GCATC 1 cut(s) 895
MaeII ACGT 3 cut(s) 45, 100, 471
MalI GATC 1 cut(s) 197
MbiI CCGCTC 1 cut(s) 421
MboI GATC 1 cut(s) 195
MboII GAAGA 6 cut(s) 101, 355, 385, 421, 583, 955
MhlI GDGCHC 3 cut(s) 81, 237, 483
MlsI TGGCCA 1 cut(s) 503
MluCI AATT 2 cut(s) 685, 841
MluNI TGGCCA 1 cut(s) 503
MlyI GAGTC 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 646
MnlI CCTC 8 cut(s) 4, 187, 230, 296, 437, 445, 543, 963
Mox20I TGGCCA 1 cut(s) 503
Mph1103I ATGCAT 1 cut(s) 923
MroNI GCCGGC 1 cut(s) 212
MscI TGGCCA 1 cut(s) 503
MseI TTAA 2 cut(s) 53, 930
MslI CAYNNNNRTG 2 cut(s) 191, 503
Msp20I TGGCCA 1 cut(s) 503
MspA1I CMGCKG 2 cut(s) 544, 568
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 2 cut(s) 589, 836
MvaI CCWGG 2 cut(s) 589, 836
MwoI GCNNNNNNNGC 6 cut(s) 222, 338, 565, 896, 905, 965
NaeI GCCGGC 1 cut(s) 214
NcoI CCATGG 1 cut(s) 498
NdeII GATC 1 cut(s) 195
NgoMIV GCCGGC 1 cut(s) 212
NlaIII CATG 7 cut(s) 190, 373, 384, 502, 508, 756, 925
NlaIV GGNNCC 1 cut(s) 15
NmeAIII GCCGAG 3 cut(s) 14, 201, 502
NsiI ATGCAT 1 cut(s) 923
NspI RCATGY 1 cut(s) 373
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 273
PdiI GCCGGC 1 cut(s) 214
PfeI GAWTC 3 cut(s) 125, 762, 949
PkrI GCNGC 5 cut(s) 241, 546, 604, 814, 970
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Psp124BI GAGCTC 3 cut(s) 81, 237, 483
Psp6I CCWGG 2 cut(s) 587, 834
PspFI CCCAGC 1 cut(s) 936
PspGI CCWGG 2 cut(s) 587, 834
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 152
PstI CTGCAG 1 cut(s) 549
PvuII CAGCTG 1 cut(s) 568
RsaI GTAC 3 cut(s) 32, 350, 368
RsaNI GTAC 3 cut(s) 31, 349, 367
RseI CAYNNNNRTG 2 cut(s) 191, 503
SacI GAGCTC 3 cut(s) 81, 237, 483
SaqAI TTAA 2 cut(s) 53, 930
SatI GCNGC 5 cut(s) 240, 545, 603, 813, 969
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 1 cut(s) 152
ScaI AGTACT 2 cut(s) 32, 350
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 2 cut(s) 589, 836
SduI GDGCHC 3 cut(s) 81, 237, 483
SfaNI GCATC 1 cut(s) 895
SfcI CTRYAG 1 cut(s) 545
SinI GGWCC 1 cut(s) 152
SmiMI CAYNNNNRTG 2 cut(s) 191, 503
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
Sse9I AATT 2 cut(s) 685, 841
SsiI CCGC 6 cut(s) 26, 240, 419, 512, 542, 602
SstI GAGCTC 3 cut(s) 81, 237, 483
StyD4I CCNGG 2 cut(s) 587, 834
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 1 cut(s) 321
TaiI ACGT 3 cut(s) 48, 103, 474
TaqI TCGA 2 cut(s) 276, 771
TaqII GACCGA 2 cut(s) 140, 482
TasI AATT 2 cut(s) 685, 841
TatI WGTACW 3 cut(s) 30, 348, 366
TauI GCSGC 2 cut(s) 242, 605
TfiI GAWTC 3 cut(s) 125, 762, 949
Tru1I TTAA 2 cut(s) 53, 930
Tru9I TTAA 2 cut(s) 53, 930
TscAI CASTG 1 cut(s) 324
TseI GCWGC 3 cut(s) 544, 812, 968
TspDTI ATGAA 3 cut(s) 102, 605, 787
TspGWI ACGGA 1 cut(s) 6
TspRI CASTG 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 1 cut(s) 685
XceI RCATGY 1 cut(s) 373
ZraI GACGTC 1 cut(s) 46
ZrmI AGTACT 2 cut(s) 32, 350
Zsp2I ATGCAT 1 cut(s) 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.