Rmu_co8087868.1_g000001

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8087868.1
OG0000476
Physical Location & Seq
Forward (+)
269 .. 589
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8087868.1_g000001.1.cds

Sequence Viewer

Length: 240 bp
atgatctttacctccagcattcctgttattgctatggtcaatgatttatcagtcttgttggcattcactattctcctcagttgcattcaaccagtgctctcaggggtagcaatcggatctggtcggcaagcaatagtagctattgtaaatataggtagctactacctggttggcatgcctgttggggttgttttaggatggttgctagtgtttggtatcaaggtatgttccttccgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

79

Amino Acids

8.31

Weight (kDa)

8.84

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10420 AT5G44050 AT5G65380
fragaria_vesca FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36170 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_7g30730 FvH4_7g30730
malus_domestica MD01G1032800.v1.1 MD08G1190900.v1.1 MD08G1191000.v1.1 MD15G1378200.v1.1 MD15G1378900.v1.1 MD15G1379100.v1.1
prunus_persica Prupe.1G524800_v2.0.a1 Prupe.1G525000_v2.0.a1 Prupe.1G525200_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.6G195500_v2.0.a1
pyrus_communis pycom01g06450 pycom08g16390 pycom15g33900 pycom15g33930 pycom15g33950
rosa_chinensis RchiOBHm_Chr2g0112071 RchiOBHm_Chr7g0237941 RchiOBHm_Chr7g0237951 RchiOBHm_Chr7g0237971 RchiOBHm_Chr7g0238021
rosa_laevigata RLG00000000946 RLG00000000947 RLG00000000949 RLG00000017947
rosa_multiflora Rmu_co8087868.1_g000001 Rmu_co8407183.1_g000001 Rmu_co8459217.1_g000001 Rmu_sc0001339.1_g000020 Rmu_sc0002041.1_g000021 Rmu_sc0002586.1_g000009 Rmu_sc0002877.1_g000026 Rmu_sc0002877.1_g000032
rosa_roxburghii Rroxscaffold_2G00131800 Rroxscaffold_3G00223450 Rroxscaffold_3G00223470 Rroxscaffold_3G00223480
rosa_rugosa Rorug02G0178300 Rorug07G0309600 Rorug07G0309700.1 Rorug07G0309800.1 Rorug07G0309900.1 Rorug07G0310000 Rorug07G0310100
rosa_samantha Rh2AG230300 Rh2BG243500 Rh2DG238200 Rh7AG464600 Rh7AG464700 Rh7AG464900 Rh7BG435300 Rh7BG435600 Rh7CG482800 Rh7CG483100 Rh7CG483500 Rh7DG451500 Rh7DG451700 Rh7DG451800
rosa_wichuraiana Rw2G017840 Rw2G017890 Rw7G038490 Rw7G038500 Rw7G038510 Rw7G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 124
AgsI TTSAA 1 cut(s) 89
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 2 cut(s) 140, 159
AluI AGCT 2 cut(s) 140, 159
Alw21I GWGCWC 1 cut(s) 99
AlwI GGATC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 99
BccI CCATC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 167
BfaI CTAG 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 92
BseBI CCWGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 203
BseMII CTCAG 2 cut(s) 91, 114
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 99
BsmI GAATGC 3 cut(s) 18, 62, 84
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 2 cut(s) 3, 116
BspCNI CTCAG 2 cut(s) 90, 113
BspPI GGATC 1 cut(s) 124
BsrI ACTGG 1 cut(s) 92
BssMI GATC 2 cut(s) 3, 116
Bst2UI CCWGG 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 129, 176
BstDEI CTNAG 2 cut(s) 77, 100
BstF5I GGATG 1 cut(s) 203
BstKTI GATC 2 cut(s) 6, 119
BstMBI GATC 2 cut(s) 3, 116
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BtsCI GGATG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 129, 176
CsiI ACCWGGT 1 cut(s) 165
CviAII CATG 1 cut(s) 175
CviJI RGCY 2 cut(s) 140, 159
CviKI_1 RGCY 2 cut(s) 140, 159
DdeI CTNAG 2 cut(s) 77, 100
DpnI GATC 2 cut(s) 5, 118
DpnII GATC 2 cut(s) 3, 116
EcoRII CCWGG 1 cut(s) 165
FaeI CATG 1 cut(s) 178
FaiI YATR 4 cut(s) 35, 152, 176, 226
FatI CATG 1 cut(s) 174
FokI GGATG 1 cut(s) 210
FspBI CTAG 1 cut(s) 206
Hin1II CATG 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 77, 100
Hsp92II CATG 1 cut(s) 178
Kzo9I GATC 2 cut(s) 3, 116
LpnPI CCDG 8 cut(s) 28, 36, 87, 105, 105, 152, 179, 192
MabI ACCWGGT 1 cut(s) 165
MaeI CTAG 1 cut(s) 206
MalI GATC 2 cut(s) 5, 118
MboI GATC 2 cut(s) 3, 116
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 99
MnlI CCTC 2 cut(s) 22, 86
MseI TTAA 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 167
Mva1269I GAATGC 3 cut(s) 18, 62, 84
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 2 cut(s) 3, 116
NlaIII CATG 1 cut(s) 178
NspI RCATGY 1 cut(s) 178
PaeI GCATGC 1 cut(s) 178
PctI GAATGC 3 cut(s) 18, 62, 84
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PsuI RGATCY 1 cut(s) 116
SaqAI TTAA 1 cut(s) 238
Sau3AI GATC 2 cut(s) 3, 116
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 1 cut(s) 99
SetI ASST 6 cut(s) 14, 142, 157, 161, 168, 225
SexAI ACCWGGT 1 cut(s) 165
SphI GCATGC 1 cut(s) 178
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 165
Tru1I TTAA 1 cut(s) 238
Tru9I TTAA 1 cut(s) 238
TscAI CASTG 1 cut(s) 99
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 1 cut(s) 99
XceI RCATGY 1 cut(s) 178
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.