Rh7CG483100

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000476
Physical Location & Seq
Forward (+)
64971231 .. 64973720
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG483100.1

Sequence Viewer

Length: 816 bp
ATGGCAAGCGCCTTAGAAACGCTATGTGGGCAAGCCTTTGGAGCCAGAAGATACCACATGCTTGGGATATACCTCCAGAGGTCATGGATTGTGTTGTTCCTCTGTTGCTTTGCTCTGTTGCCATTTTATATTTTCGCTTCACCGATTCTTAAACTCATGGGACAAACGGATGAGGTGGCGGAGCAGTCGGGGCTGGTGGCTGTGTGGCTCATACCCTTGCACTTTAGCTTTGCATTCCAGTTTCCTATGCAGAGATTCTTGCAATGCCAGCTGAAGAACTCTATCATCGCTTGGGTATCGTTAGCGGGGTTGTTGGTTAATGTGTGCACAAGTTGGCTTCTAGTCTATGTGTTGGATTGTGGGGTTGTGGGTGCCGCTATTGCTTTGGATATCTCTTGGTGGTTTTTGGTCTTTGGGATGTACATATATATTGCTTGTGGTTGGTGCCCTCTCACTTGGACTGGTTTTTCTATGGAAGCCTTCTCTGGGCTTTGGCAATTCATCAAACTCTCTGCAGCTGCTGGAGTAGCTGTGGGATCAGGATGGCAAGCATGGGTGGCATATATAAATCTCTTCTGCTACTACATTGTTGGGCTCCCACTTGGGTTTGTAATGGGATGGGTCTTCAACTTAAGCATTGCGGGTATTTGGGGTGGAATGATCTTTGGTGGAACTGCTATGCAGACACTGATATTGTCCATCATAACTGTAAGACGAGATTGGAAAAAGGAGGCTGAGGATGCCAGCAAACGTGTGTCAAAGTGGTCGACGCCTAATCCAGAAGACAAGCCATCAGAACAGCTACTAGTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

271

Amino Acids

30.31

Weight (kDa)

7.48

Isoelectric Point (pI)

31.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 1 - 113 4.6e-20 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10420 AT5G44050 AT5G65380
fragaria_vesca FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36170 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_7g30730 FvH4_7g30730
malus_domestica MD01G1032800.v1.1 MD08G1190900.v1.1 MD08G1191000.v1.1 MD15G1378200.v1.1 MD15G1378900.v1.1 MD15G1379100.v1.1
prunus_persica Prupe.1G524800_v2.0.a1 Prupe.1G525000_v2.0.a1 Prupe.1G525200_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.6G195500_v2.0.a1
pyrus_communis pycom01g06450 pycom08g16390 pycom15g33900 pycom15g33930 pycom15g33950
rosa_chinensis RchiOBHm_Chr2g0112071 RchiOBHm_Chr7g0237941 RchiOBHm_Chr7g0237951 RchiOBHm_Chr7g0237971 RchiOBHm_Chr7g0238021
rosa_laevigata RLG00000000946 RLG00000000947 RLG00000000949 RLG00000017947
rosa_multiflora Rmu_co8087868.1_g000001 Rmu_co8407183.1_g000001 Rmu_co8459217.1_g000001 Rmu_sc0001339.1_g000020 Rmu_sc0002041.1_g000021 Rmu_sc0002586.1_g000009 Rmu_sc0002877.1_g000026 Rmu_sc0002877.1_g000032
rosa_roxburghii Rroxscaffold_2G00131800 Rroxscaffold_3G00223450 Rroxscaffold_3G00223470 Rroxscaffold_3G00223480
rosa_rugosa Rorug02G0178300 Rorug07G0309600 Rorug07G0309700.1 Rorug07G0309800.1 Rorug07G0309900.1 Rorug07G0310000 Rorug07G0310100
rosa_samantha Rh2AG230300 Rh2BG243500 Rh2DG238200 Rh7AG464600 Rh7AG464700 Rh7AG464900 Rh7BG435300 Rh7BG435600 Rh7CG482800 Rh7CG483100 Rh7CG483500 Rh7DG451500 Rh7DG451700 Rh7DG451800
rosa_wichuraiana Rw2G017840 Rw2G017890 Rw7G038490 Rw7G038500 Rw7G038510 Rw7G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 371, 444
AccI GTMKAC 1 cut(s) 767
AciI CCGC 4 cut(s) 179, 305, 375, 641
AclWI GGATC 1 cut(s) 544
AcuI CTGAAG 1 cut(s) 293
AcyI GRCGYC 1 cut(s) 770
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 1 cut(s) 486
AflII CTTAAG 1 cut(s) 631
AflIII ACRYGT 1 cut(s) 751
AgsI TTSAA 1 cut(s) 628
AhlI ACTAGT 1 cut(s) 805
AluBI AGCT 5 cut(s) 228, 271, 518, 530, 802
AluI AGCT 5 cut(s) 228, 271, 518, 530, 802
Alw21I GWGCWC 1 cut(s) 329
Alw44I GTGCAC 1 cut(s) 325
AlwI GGATC 1 cut(s) 544
AlwNI CAGNNNCTG 2 cut(s) 521, 688
ApaLI GTGCAC 1 cut(s) 325
ApeKI GCWGC 2 cut(s) 515, 518
AspLEI GCGC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 132
BaeGI GKGCMC 2 cut(s) 329, 449
BanI GGYRCC 2 cut(s) 371, 444
BanII GRGCYC 1 cut(s) 597
BbsI GAAGAC 2 cut(s) 616, 789
Bbv12I GWGCWC 1 cut(s) 329
BbvCI CCTCAGC 1 cut(s) 735
BbvI GCAGC 2 cut(s) 505, 527
BccI CCATC 4 cut(s) 537, 612, 707, 799
BcuI ACTAGT 1 cut(s) 805
BfaI CTAG 2 cut(s) 341, 806
BfmI CTRYAG 1 cut(s) 513
BfoI RGCGCY 1 cut(s) 12
BfrI CTTAAG 1 cut(s) 631
BisI GCNGC 3 cut(s) 375, 516, 519
BlsI GCNGC 3 cut(s) 376, 517, 520
BmiI GGNNCC 4 cut(s) 43, 373, 446, 596
BmsI GCATC 1 cut(s) 730
BpiI GAAGAC 2 cut(s) 616, 789
BpmI CTGGAG 2 cut(s) 59, 543
Bpu10I CCTNAGC 1 cut(s) 735
BsaHI GRCGYC 1 cut(s) 770
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 1 cut(s) 486
Bse1I ACTGG 2 cut(s) 238, 466
Bse3DI GCAATG 2 cut(s) 269, 636
BseGI GGATG 5 cut(s) 175, 423, 548, 623, 745
BseLI CCNNNNNNNGG 1 cut(s) 486
BseMI GCAATG 2 cut(s) 269, 636
BseMII CTCAG 1 cut(s) 726
BseNI ACTGG 2 cut(s) 238, 466
BseSI GKGCMC 2 cut(s) 329, 449
BseXI GCAGC 2 cut(s) 505, 527
BshNI GGYRCC 2 cut(s) 371, 444
BsiHKAI GWGCWC 1 cut(s) 329
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 486
BsmFI GGGAC 1 cut(s) 174
BsmI GAATGC 1 cut(s) 233
Bsp1286I GDGCHC 3 cut(s) 329, 449, 597
Bsp1407I TGTACA 1 cut(s) 420
Bsp143I GATC 2 cut(s) 536, 660
BspACI CCGC 4 cut(s) 179, 305, 375, 641
BspCNI CTCAG 1 cut(s) 727
BspLI GGNNCC 4 cut(s) 43, 373, 446, 596
BspMAI CTGCAG 1 cut(s) 517
BspPI GGATC 1 cut(s) 544
BspT107I GGYRCC 2 cut(s) 371, 444
BspTI CTTAAG 1 cut(s) 631
BsrDI GCAATG 2 cut(s) 269, 636
BsrGI TGTACA 1 cut(s) 420
BsrI ACTGG 2 cut(s) 238, 466
BssMI GATC 2 cut(s) 536, 660
BssNI GRCGYC 1 cut(s) 770
Bst4CI ACNGT 1 cut(s) 709
Bst6I CTCTTC 1 cut(s) 578
BstACI GRCGYC 1 cut(s) 770
BstAFI CTTAAG 1 cut(s) 631
BstAUI TGTACA 1 cut(s) 420
BstC8I GCNNGC 5 cut(s) 7, 33, 269, 549, 745
BstDEI CTNAG 2 cut(s) 13, 735
BstF5I GGATG 5 cut(s) 175, 423, 548, 623, 745
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 2 cut(s) 539, 663
BstMBI GATC 2 cut(s) 536, 660
BstMWI GCNNNNNNNGC 8 cut(s) 28, 41, 190, 268, 380, 527, 557, 740
BstNSI RCATGY 1 cut(s) 61
BstSFI CTRYAG 1 cut(s) 513
BstSLI GKGCMC 2 cut(s) 329, 449
BstV1I GCAGC 2 cut(s) 505, 527
BstV2I GAAGAC 2 cut(s) 616, 789
BstXI CCANNNNNNTGG 1 cut(s) 62
BtgZI GCGATG 1 cut(s) 271
BtsCI GGATG 5 cut(s) 175, 423, 548, 623, 745
BtsIMutI CAGTG 1 cut(s) 686
Cac8I GCNNGC 5 cut(s) 7, 33, 269, 549, 745
CaiI CAGNNNCTG 2 cut(s) 521, 688
CfoI GCGC 1 cut(s) 11
CseI GACGC 1 cut(s) 778
Csp6I GTAC 1 cut(s) 421
CviAII CATG 4 cut(s) 58, 84, 157, 552
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 2 cut(s) 13, 735
DpnI GATC 2 cut(s) 538, 662
DpnII GATC 2 cut(s) 536, 660
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
EciI GGCGGA 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 597
Eco32I GATATC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 293
EcoRV GATATC 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 597
FaeI CATG 4 cut(s) 61, 87, 160, 555
FaqI GGGAC 1 cut(s) 174
FatI CATG 4 cut(s) 57, 83, 156, 551
FauI CCCGC 2 cut(s) 298, 634
FblI GTMKAC 1 cut(s) 767
Fnu4HI GCNGC 3 cut(s) 375, 516, 519
FokI GGATG 5 cut(s) 182, 430, 555, 630, 752
FriOI GRGCYC 1 cut(s) 597
Fsp4HI GCNGC 3 cut(s) 375, 516, 519
FspBI CTAG 2 cut(s) 341, 806
GlaI GCGC 1 cut(s) 10
GluI GCNGC 3 cut(s) 375, 516, 519
GsuI CTGGAG 2 cut(s) 59, 543
HaeII RGCGCY 1 cut(s) 12
HgaI GACGC 1 cut(s) 778
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 770
Hin1II CATG 4 cut(s) 61, 87, 160, 555
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HincII GTYRAC 1 cut(s) 768
HindII GTYRAC 1 cut(s) 768
HinfI GANTC 2 cut(s) 145, 255
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 2 cut(s) 327, 768
Hpy188I TCNGA 1 cut(s) 796
Hpy188III TCNNGA 3 cut(s) 76, 540, 779
Hpy8I GTNNAC 2 cut(s) 327, 768
Hpy99I CGWCG 1 cut(s) 772
HpyAV CCTTC 1 cut(s) 490
HpyCH4III ACNGT 1 cut(s) 709
HpyCH4IV ACGT 1 cut(s) 751
HpyCH4V TGCA 7 cut(s) 220, 233, 250, 262, 327, 515, 682
HpyF10VI GCNNNNNNNGC 8 cut(s) 28, 41, 190, 268, 380, 527, 557, 740
HpyF3I CTNAG 2 cut(s) 13, 735
HpySE526I ACGT 1 cut(s) 751
Hsp92I GRCGYC 1 cut(s) 770
Hsp92II CATG 4 cut(s) 61, 87, 160, 555
HspAI GCGC 1 cut(s) 9
Kzo9I GATC 2 cut(s) 536, 660
LmnI GCTCC 3 cut(s) 41, 181, 600
Lsp1109I GCAGC 2 cut(s) 505, 527
LweI GCATC 1 cut(s) 730
MaeI CTAG 2 cut(s) 341, 806
MaeII ACGT 1 cut(s) 751
MalI GATC 2 cut(s) 538, 662
MboI GATC 2 cut(s) 536, 660
MboII GAAGA 5 cut(s) 60, 286, 565, 616, 794
MhlI GDGCHC 3 cut(s) 329, 449, 597
MluCI AATT 2 cut(s) 497, 811
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 7 cut(s) 72, 83, 110, 166, 459, 724, 730
MseI TTAA 3 cut(s) 150, 318, 632
MspA1I CMGCKG 2 cut(s) 271, 518
MspCI CTTAAG 1 cut(s) 631
Mva1269I GAATGC 1 cut(s) 233
MwoI GCNNNNNNNGC 8 cut(s) 28, 41, 190, 268, 380, 527, 557, 740
NdeII GATC 2 cut(s) 536, 660
NlaIII CATG 4 cut(s) 61, 87, 160, 555
NlaIV GGNNCC 4 cut(s) 43, 373, 446, 596
NspI RCATGY 1 cut(s) 61
PctI GAATGC 1 cut(s) 233
PfeI GAWTC 2 cut(s) 145, 255
PkrI GCNGC 3 cut(s) 376, 517, 520
PspN4I GGNNCC 4 cut(s) 43, 373, 446, 596
PstI CTGCAG 1 cut(s) 517
PstNI CAGNNNCTG 2 cut(s) 521, 688
PvuII CAGCTG 2 cut(s) 271, 518
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SalI GTCGAC 1 cut(s) 766
SaqAI TTAA 3 cut(s) 150, 318, 632
SatI GCNGC 3 cut(s) 375, 516, 519
Sau3AI GATC 2 cut(s) 536, 660
SduI GDGCHC 3 cut(s) 329, 449, 597
SetI ASST 9 cut(s) 75, 83, 177, 230, 273, 520, 532, 754, 804
SfaNI GCATC 1 cut(s) 730
SfcI CTRYAG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 631
SmoI CTYRAG 1 cut(s) 631
SpeI ACTAGT 1 cut(s) 805
Sse9I AATT 2 cut(s) 497, 811
SsiI CCGC 4 cut(s) 179, 305, 375, 641
SspMI CTAG 2 cut(s) 341, 806
TaaI ACNGT 1 cut(s) 709
TaiI ACGT 1 cut(s) 754
TaqI TCGA 1 cut(s) 767
TasI AATT 2 cut(s) 497, 811
TatI WGTACW 1 cut(s) 420
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 2 cut(s) 145, 255
Tru1I TTAA 3 cut(s) 150, 318, 632
Tru9I TTAA 3 cut(s) 150, 318, 632
TscAI CASTG 1 cut(s) 693
TseI GCWGC 2 cut(s) 515, 518
TspDTI ATGAA 1 cut(s) 490
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 1 cut(s) 693
Vha464I CTTAAG 1 cut(s) 631
VneI GTGCAC 1 cut(s) 325
XceI RCATGY 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 767
XspI CTAG 2 cut(s) 341, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.