Rorug07G0310100

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000476
Physical Location & Seq
Reverse (-)
31051255 .. 31052086
832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0310100.1

Sequence Viewer

Length: 384 bp
ATGATGATCCTTGATGAAATTCCTCCTGCTACTACTCTGTCACAGGCAGGAATTAAATTTGAAAGTGGCTCCCTTGATAGCGAAAGCATACTGAACATACAATTCAAACGTGGAGTTCTTACTATTCCACAGCTTGAAATTGGAGAACTGACCGAGCCATTGTTCAGGAACCTTATTGCGTTTGAGCAATGCTACCATGGTCGTTCTCATCACATAACTTCTTATGCTGTCTTAAGGGATAAACTCGTCGGTTCGAGCAGGGATATGGAGTTTCTTTGTGAGAAGAGAATAATAGGTAACTGGCTGAGAGCTGAAGATGGTTCTCAGTTCTTCAACAAGCTTTACAATGACATGCACGTCCCTTCTCAAAAAGTTCTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

127

Amino Acids

14.5

Weight (kDa)

5.77

Isoelectric Point (pI)

61.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 7 - 121 3.1e-33 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10420 AT5G44050 AT5G65380
fragaria_vesca FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36170 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_7g30730 FvH4_7g30730
malus_domestica MD01G1032800.v1.1 MD08G1190900.v1.1 MD08G1191000.v1.1 MD15G1378200.v1.1 MD15G1378900.v1.1 MD15G1379100.v1.1
prunus_persica Prupe.1G524800_v2.0.a1 Prupe.1G525000_v2.0.a1 Prupe.1G525200_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.6G195500_v2.0.a1
pyrus_communis pycom01g06450 pycom08g16390 pycom15g33900 pycom15g33930 pycom15g33950
rosa_chinensis RchiOBHm_Chr2g0112071 RchiOBHm_Chr7g0237941 RchiOBHm_Chr7g0237951 RchiOBHm_Chr7g0237971 RchiOBHm_Chr7g0238021
rosa_laevigata RLG00000000946 RLG00000000947 RLG00000000949 RLG00000017947
rosa_multiflora Rmu_co8087868.1_g000001 Rmu_co8407183.1_g000001 Rmu_co8459217.1_g000001 Rmu_sc0001339.1_g000020 Rmu_sc0002041.1_g000021 Rmu_sc0002586.1_g000009 Rmu_sc0002877.1_g000026 Rmu_sc0002877.1_g000032
rosa_roxburghii Rroxscaffold_2G00131800 Rroxscaffold_3G00223450 Rroxscaffold_3G00223470 Rroxscaffold_3G00223480
rosa_rugosa Rorug02G0178300 Rorug07G0309600 Rorug07G0309700.1 Rorug07G0309800.1 Rorug07G0309900.1 Rorug07G0310000 Rorug07G0310100
rosa_samantha Rh2AG230300 Rh2BG243500 Rh2DG238200 Rh7AG464600 Rh7AG464700 Rh7AG464900 Rh7BG435300 Rh7BG435600 Rh7CG482800 Rh7CG483100 Rh7CG483500 Rh7DG451500 Rh7DG451700 Rh7DG451800
rosa_wichuraiana Rw2G017840 Rw2G017890 Rw7G038490 Rw7G038500 Rw7G038510 Rw7G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 356
AcsI RAATTY 2 cut(s) 18, 56
AcuI CTGAAG 1 cut(s) 333
AflII CTTAAG 1 cut(s) 232
AgsI TTSAA 4 cut(s) 62, 106, 137, 334
AjiI CACGTC 1 cut(s) 358
AluBI AGCT 3 cut(s) 133, 311, 340
AluI AGCT 3 cut(s) 133, 311, 340
ApoI RAATTY 2 cut(s) 18, 56
BccI CCATC 1 cut(s) 311
BfrI CTTAAG 1 cut(s) 232
BmgBI CACGTC 1 cut(s) 358
BmiI GGNNCC 2 cut(s) 70, 170
BsaJI CCNNGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 2 cut(s) 296, 338
BseNI ACTGG 1 cut(s) 305
BslFI GGGAC 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 344
Bsp143I GATC 1 cut(s) 6
Bsp19I CCATGG 1 cut(s) 196
BspCNI CTCAG 2 cut(s) 297, 337
BspLI GGNNCC 2 cut(s) 70, 170
BspTI CTTAAG 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 194
BsrI ACTGG 1 cut(s) 305
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 278
BstAFI CTTAAG 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 305, 324
BstDSI CCRYGG 1 cut(s) 196
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstNSI RCATGY 1 cut(s) 355
BtgI CCRYGG 1 cut(s) 196
BtrI CACGTC 1 cut(s) 358
CviAII CATG 2 cut(s) 197, 352
CviJI RGCY 6 cut(s) 69, 133, 157, 304, 311, 340
CviKI_1 RGCY 6 cut(s) 69, 133, 157, 304, 311, 340
DdeI CTNAG 2 cut(s) 305, 324
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
DrdI GACNNNNNNGTC 1 cut(s) 356
DseDI GACNNNNNNGTC 1 cut(s) 356
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 2 cut(s) 200, 355
FaiI YATR 8 cut(s) 89, 98, 198, 215, 225, 266, 353, 382
FaqI GGGAC 1 cut(s) 344
FatI CATG 2 cut(s) 196, 351
Hin1II CATG 2 cut(s) 200, 355
HindIII AAGCTT 1 cut(s) 338
Hpy188III TCNNGA 1 cut(s) 166
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 372
HpyCH4IV ACGT 2 cut(s) 109, 357
HpyCH4V TGCA 1 cut(s) 355
HpyF3I CTNAG 2 cut(s) 305, 324
HpySE526I ACGT 2 cut(s) 109, 357
Hsp92II CATG 2 cut(s) 200, 355
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 6 cut(s) 29, 33, 39, 151, 244, 286
MaeII ACGT 2 cut(s) 109, 357
MaeIII GTNAC 2 cut(s) 39, 296
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 4 cut(s) 295, 322, 326, 368
MluCI AATT 5 cut(s) 18, 51, 56, 101, 138
MnlI CCTC 1 cut(s) 33
MseI TTAA 2 cut(s) 54, 233
MspCI CTTAAG 1 cut(s) 232
NcoI CCATGG 1 cut(s) 196
NdeII GATC 1 cut(s) 6
NlaIII CATG 2 cut(s) 200, 355
NlaIV GGNNCC 2 cut(s) 70, 170
NmuCI GTSAC 1 cut(s) 39
NspI RCATGY 1 cut(s) 355
PspN4I GGNNCC 2 cut(s) 70, 170
SaqAI TTAA 2 cut(s) 54, 233
Sau3AI GATC 1 cut(s) 6
SetI ASST 7 cut(s) 112, 135, 174, 298, 313, 342, 360
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 5 cut(s) 18, 51, 56, 101, 138
StyI CCWWGG 1 cut(s) 196
TaiI ACGT 2 cut(s) 112, 360
TaqI TCGA 1 cut(s) 254
TaqII GACCGA 1 cut(s) 167
TasI AATT 5 cut(s) 18, 51, 56, 101, 138
Tru1I TTAA 2 cut(s) 54, 233
Tru9I TTAA 2 cut(s) 54, 233
TseFI GTSAC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 30
Vha464I CTTAAG 1 cut(s) 232
XapI RAATTY 2 cut(s) 18, 56
XceI RCATGY 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.