Rmu_sc0002877.1_g000026

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002877.1
OG0000476
Physical Location & Seq
Forward (+)
66327 .. 68603
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002877.1_g000026.1.cds

Sequence Viewer

Length: 1308 bp
atgttctccgtcaccgtcgtcacccaatccttcgctggccacctcagtgacctcgacctcgccgccatctccatcgccaccaccgtcatcatcgccattactttcggtttcatgctaggcatggccagcgcgctcgagactctgtgtggtcaagcctacggagctaaacagtaccacatgctggggacatatctgcagcgttcttgggtagttctatttctctgcgcagtgttgcttttacccctattggtgtttgctacgccattgttgaaactcatgggactgtccgaggtcgtggccgagcagactggtttagttgccctctggttgattccatttcacttgagcttcccatttcagctgacactgcagagattcttgcagagtcagcgaaagactggagtgattgcctgggtttctggaggggttttggccctccatgtgtttgtgagttgggtttttgtgtatgagttgaggattgggattgttgggactgctcttactattggttttgcttggtggctatcggttttgggtttgtttgtgtacactgtttgtggtgggtgtttggaaacatggactggtttttcagctcaagcttttgttgggctctgggatttctttaagctttctttggcttctgggttcatgctcttagtggagaatttttattttagagttttggtgatagtgtctggatatatgcacaataccgagattgctgttgatgccctttccatctgcatgagtatctatgcttgggagtccatgattccactaggatttttggcagcagttggagtgcgggtagcaaatgaacttggcgcaagcaacgcaaaaggtgcaaaatttgcaaccacagtttcagtcttgacctccctagcagtgggacttctattttgtttaataattatagtcttccatgagaagcttgcaatgatctttacctccagcattcctgttattgctatggtcaatgatttatcagtcttgttggcattcactattctcctcagttgcattcaaccagtgctctcaggggtagcaatcggatctggtcggcaagcaatagtagctattgtaaatataggtagctactacctggttggcatgcctgttggggttgttttaggatggttgctagtgtttggtatcaagggtatgtgggctggaatgatctgtggaattgtggttcaaaccttgatactgataattatcaccatgagatgtgattgggaaaaagaggcagagagagctcgaattcacgtaacaaaggatgcagcttcaccattgatctttgctcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

435

Amino Acids

47.15

Weight (kDa)

7.02

Isoelectric Point (pI)

28.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10420 AT5G44050 AT5G65380
fragaria_vesca FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36170 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_7g30730 FvH4_7g30730
malus_domestica MD01G1032800.v1.1 MD08G1190900.v1.1 MD08G1191000.v1.1 MD15G1378200.v1.1 MD15G1378900.v1.1 MD15G1379100.v1.1
prunus_persica Prupe.1G524800_v2.0.a1 Prupe.1G525000_v2.0.a1 Prupe.1G525200_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.6G195500_v2.0.a1
pyrus_communis pycom01g06450 pycom08g16390 pycom15g33900 pycom15g33930 pycom15g33950
rosa_chinensis RchiOBHm_Chr2g0112071 RchiOBHm_Chr7g0237941 RchiOBHm_Chr7g0237951 RchiOBHm_Chr7g0237971 RchiOBHm_Chr7g0238021
rosa_laevigata RLG00000000946 RLG00000000947 RLG00000000949 RLG00000017947
rosa_multiflora Rmu_co8087868.1_g000001 Rmu_co8407183.1_g000001 Rmu_co8459217.1_g000001 Rmu_sc0001339.1_g000020 Rmu_sc0002041.1_g000021 Rmu_sc0002586.1_g000009 Rmu_sc0002877.1_g000026 Rmu_sc0002877.1_g000032
rosa_roxburghii Rroxscaffold_2G00131800 Rroxscaffold_3G00223450 Rroxscaffold_3G00223470 Rroxscaffold_3G00223480
rosa_rugosa Rorug02G0178300 Rorug07G0309600 Rorug07G0309700.1 Rorug07G0309800.1 Rorug07G0309900.1 Rorug07G0310000 Rorug07G0310100
rosa_samantha Rh2AG230300 Rh2BG243500 Rh2DG238200 Rh7AG464600 Rh7AG464700 Rh7AG464900 Rh7BG435300 Rh7BG435600 Rh7CG482800 Rh7CG483100 Rh7CG483500 Rh7DG451500 Rh7DG451700 Rh7DG451800
rosa_wichuraiana Rw2G017840 Rw2G017890 Rw7G038490 Rw7G038500 Rw7G038510 Rw7G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 226
AccB7I CCANNNNNTGG 1 cut(s) 181
AccII CGCG 1 cut(s) 131
AciI CCGC 2 cut(s) 63, 805
AclWI GGATC 1 cut(s) 1060
AcoI YGGCCR 3 cut(s) 37, 123, 297
AcsI RAATTY 3 cut(s) 664, 848, 1260
AfaI GTAC 2 cut(s) 173, 548
AfiI CCNNNNNNNGG 2 cut(s) 181, 886
AgsI TTSAA 3 cut(s) 271, 1025, 1196
AjnI CCWGG 2 cut(s) 410, 1101
AleI CACNNNNGTG 1 cut(s) 45
AloI GAACNNNNNNTCC 2 cut(s) 1176, 1208
Alw21I GWGCWC 2 cut(s) 1035, 1258
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 1 cut(s) 1060
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 4 cut(s) 37, 123, 297, 432
ApeKI GCWGC 3 cut(s) 196, 791, 1280
ApoI RAATTY 3 cut(s) 664, 848, 1260
ArsI GACNNNNNNTTYG 2 cut(s) 882, 914
AspLEI GCGC 4 cut(s) 131, 133, 227, 827
AspS9I GGNCC 1 cut(s) 433
AsuHPI GGTGA 5 cut(s) 4, 13, 697, 1210, 1278
AvaI CYCGRG 1 cut(s) 134
BalI TGGCCA 2 cut(s) 39, 125
BanII GRGCYC 2 cut(s) 612, 1258
BbsI GAAGAC 1 cut(s) 910
Bbv12I GWGCWC 2 cut(s) 1035, 1258
BbvI GCAGC 3 cut(s) 208, 803, 1292
BccI CCATC 4 cut(s) 74, 80, 746, 1128
BciT130I CCWGG 2 cut(s) 412, 1103
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 4 cut(s) 116, 779, 881, 1142
BfmI CTRYAG 2 cut(s) 194, 368
BisI GCNGC 4 cut(s) 63, 197, 792, 1281
BlsI GCNGC 4 cut(s) 64, 198, 793, 1282
Bme1390I CCNGG 2 cut(s) 412, 1103
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 433
BmrFI CCNGG 2 cut(s) 412, 1103
BmsI GCATC 2 cut(s) 718, 1267
BpiI GAAGAC 1 cut(s) 910
BpmI CTGGAG 3 cut(s) 420, 441, 934
BpuEI CTTGAG 2 cut(s) 364, 579
BsaAI YACGTR 1 cut(s) 1267
BsaBI GATNNNNATC 1 cut(s) 1214
BsaJI CCNNGG 2 cut(s) 288, 411
BsaXI ACNNNNNCTCC 2 cut(s) 792, 822
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 886
Bse1I ACTGG 4 cut(s) 313, 403, 586, 1028
Bse3DI GCAATG 1 cut(s) 942
Bse8I GATNNNNATC 1 cut(s) 1214
BseBI CCWGG 2 cut(s) 412, 1103
BseDI CCNNGG 2 cut(s) 288, 411
BseGI GGATG 2 cut(s) 1139, 1282
BseJI GATNNNNATC 1 cut(s) 1214
BseLI CCNNNNNNNGG 2 cut(s) 181, 886
BseMI GCAATG 1 cut(s) 942
BseMII CTCAG 3 cut(s) 58, 1027, 1050
BseNI ACTGG 4 cut(s) 313, 403, 586, 1028
BsePI GCGCGC 1 cut(s) 129
BseRI GAGGAG 1 cut(s) 1001
BseXI GCAGC 3 cut(s) 208, 803, 1292
BseYI CCCAGC 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 4 cut(s) 39, 125, 299, 434
BsiHKAI GWGCWC 2 cut(s) 1035, 1258
BsiHKCI CYCGRG 1 cut(s) 134
BslFI GGGAC 4 cut(s) 199, 294, 505, 903
BslI CCNNNNNNNGG 2 cut(s) 181, 886
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 4 cut(s) 199, 294, 505, 903
BsmI GAATGC 3 cut(s) 954, 998, 1020
BsnI GGCC 4 cut(s) 39, 125, 299, 434
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 3 cut(s) 612, 1035, 1258
Bsp1407I TGTACA 1 cut(s) 546
Bsp143I GATC 4 cut(s) 939, 1052, 1176, 1293
BspACI CCGC 2 cut(s) 63, 805
BspANI GGCC 4 cut(s) 39, 125, 299, 434
BspCNI CTCAG 3 cut(s) 57, 1026, 1049
BspFNI CGCG 1 cut(s) 131
BspMAI CTGCAG 2 cut(s) 198, 372
BspPI GGATC 1 cut(s) 1060
BsrDI GCAATG 1 cut(s) 942
BsrGI TGTACA 1 cut(s) 546
BsrI ACTGG 4 cut(s) 313, 403, 586, 1028
BssECI CCNNGG 2 cut(s) 288, 411
BssHII GCGCGC 1 cut(s) 129
BssMI GATC 4 cut(s) 939, 1052, 1176, 1293
Bst2UI CCWGG 2 cut(s) 412, 1103
Bst4CI ACNGT 6 cut(s) 16, 85, 171, 285, 553, 862
BstAPI GCANNNNNTGC 2 cut(s) 842, 851
BstAUI TGTACA 1 cut(s) 546
BstBAI YACGTR 1 cut(s) 1267
BstC8I GCNNGC 7 cut(s) 37, 127, 131, 829, 933, 1065, 1112
BstDEI CTNAG 4 cut(s) 44, 655, 1013, 1036
BstF5I GGATG 2 cut(s) 1139, 1282
BstFNI CGCG 1 cut(s) 131
BstHHI GCGC 4 cut(s) 131, 133, 227, 827
BstKTI GATC 4 cut(s) 942, 1055, 1179, 1296
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 4 cut(s) 939, 1052, 1176, 1293
BstNI CCWGG 2 cut(s) 412, 1103
BstNSI RCATGY 2 cut(s) 181, 1114
BstSCI CCNGG 2 cut(s) 410, 1101
BstSFI CTRYAG 2 cut(s) 194, 368
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 3 cut(s) 208, 803, 1292
BstV2I GAAGAC 1 cut(s) 910
BstX2I RGATCY 1 cut(s) 1052
BstYI RGATCY 1 cut(s) 1052
BsuRI GGCC 4 cut(s) 39, 125, 299, 434
BtgZI GCGATG 2 cut(s) 58, 76
BtsCI GGATG 2 cut(s) 1139, 1282
BtsI GCAGTG 3 cut(s) 234, 365, 891
BtsIMutI CAGTG 6 cut(s) 52, 234, 365, 549, 891, 1035
Cac8I GCNNGC 7 cut(s) 37, 127, 131, 829, 933, 1065, 1112
CfoI GCGC 4 cut(s) 131, 133, 227, 827
Cfr13I GGNCC 1 cut(s) 433
CsiI ACCWGGT 1 cut(s) 1101
Csp6I GTAC 2 cut(s) 172, 547
CviQI GTAC 2 cut(s) 172, 547
DdeI CTNAG 4 cut(s) 44, 655, 1013, 1036
DpnI GATC 4 cut(s) 941, 1054, 1178, 1295
DpnII GATC 4 cut(s) 939, 1052, 1176, 1293
EaeI YGGCCR 3 cut(s) 37, 123, 297
Ecl136II GAGCTC 1 cut(s) 1256
Eco24I GRGCYC 2 cut(s) 612, 1258
Eco53kI GAGCTC 1 cut(s) 1256
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 1256
EcoRI GAATTC 1 cut(s) 1260
EcoRII CCWGG 2 cut(s) 410, 1101
EcoT38I GRGCYC 2 cut(s) 612, 1258
FaqI GGGAC 4 cut(s) 199, 294, 505, 903
FauI CCCGC 1 cut(s) 798
Fnu4HI GCNGC 4 cut(s) 63, 197, 792, 1281
FokI GGATG 2 cut(s) 1146, 1289
FriOI GRGCYC 2 cut(s) 612, 1258
Fsp4HI GCNGC 4 cut(s) 63, 197, 792, 1281
FspBI CTAG 4 cut(s) 116, 779, 881, 1142
FspI TGCGCA 1 cut(s) 226
GlaI GCGC 4 cut(s) 130, 132, 226, 826
GluI GCNGC 4 cut(s) 63, 197, 792, 1281
GsaI CCCAGC 1 cut(s) 185
GsuI CTGGAG 3 cut(s) 420, 441, 934
HaeIII GGCC 4 cut(s) 39, 125, 299, 434
HhaI GCGC 4 cut(s) 131, 133, 227, 827
Hin6I GCGC 4 cut(s) 129, 131, 225, 825
HinP1I GCGC 4 cut(s) 129, 131, 225, 825
HindIII AAGCTT 3 cut(s) 597, 626, 929
HinfI GANTC 6 cut(s) 139, 331, 375, 385, 764, 772
HphI GGTGA 5 cut(s) 4, 13, 697, 1210, 1278
Hpy166II GTNNAC 2 cut(s) 547, 549
Hpy188I TCNGA 2 cut(s) 289, 1052
Hpy188III TCNNGA 4 cut(s) 136, 420, 696, 871
Hpy8I GTNNAC 2 cut(s) 547, 549
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 6 cut(s) 16, 85, 171, 285, 553, 862
HpyCH4IV ACGT 1 cut(s) 1266
HpyF3I CTNAG 4 cut(s) 44, 655, 1013, 1036
HpySE526I ACGT 1 cut(s) 1266
HspAI GCGC 4 cut(s) 129, 131, 225, 825
Kzo9I GATC 4 cut(s) 939, 1052, 1176, 1293
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 3 cut(s) 208, 803, 1292
LweI GCATC 2 cut(s) 718, 1267
MabI ACCWGGT 1 cut(s) 1101
MaeI CTAG 4 cut(s) 116, 779, 881, 1142
MaeII ACGT 1 cut(s) 1266
MaeIII GTNAC 4 cut(s) 10, 19, 47, 1267
MalI GATC 4 cut(s) 941, 1054, 1178, 1295
MboI GATC 4 cut(s) 939, 1052, 1176, 1293
MboII GAAGA 1 cut(s) 910
MflI RGATCY 1 cut(s) 1052
MhlI GDGCHC 3 cut(s) 612, 1035, 1258
MlsI TGGCCA 2 cut(s) 39, 125
MluCI AATT 6 cut(s) 664, 848, 909, 1185, 1212, 1260
MluNI TGGCCA 2 cut(s) 39, 125
MlyI GAGTC 3 cut(s) 133, 394, 773
MmeI TCCRAC 1 cut(s) 778
Mox20I TGGCCA 2 cut(s) 39, 125
MscI TGGCCA 2 cut(s) 39, 125
MseI TTAA 2 cut(s) 624, 905
MslI CAYNNNNRTG 2 cut(s) 45, 743
Msp20I TGGCCA 2 cut(s) 39, 125
MspA1I CMGCKG 1 cut(s) 361
MspR9I CCNGG 2 cut(s) 412, 1103
Mva1269I GAATGC 3 cut(s) 954, 998, 1020
MvaI CCWGG 2 cut(s) 412, 1103
MvnI CGCG 1 cut(s) 131
NdeII GATC 4 cut(s) 939, 1052, 1176, 1293
NmeAIII GCCGAG 1 cut(s) 325
NmuCI GTSAC 3 cut(s) 10, 19, 47
NsbI TGCGCA 1 cut(s) 226
NspI RCATGY 2 cut(s) 181, 1114
OliI CACNNNNGTG 1 cut(s) 45
PaeI GCATGC 1 cut(s) 1114
PaeR7I CTCGAG 1 cut(s) 134
PauI GCGCGC 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 3 cut(s) 954, 998, 1020
PfeI GAWTC 3 cut(s) 331, 375, 772
PflMI CCANNNNNTGG 1 cut(s) 181
PkrI GCNGC 4 cut(s) 64, 198, 793, 1282
PleI GAGTC 3 cut(s) 133, 393, 772
PpsI GAGTC 3 cut(s) 133, 393, 772
Ppu21I YACGTR 1 cut(s) 1267
Psp124BI GAGCTC 1 cut(s) 1258
Psp6I CCWGG 2 cut(s) 410, 1101
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 2 cut(s) 410, 1101
PspPI GGNCC 1 cut(s) 433
PstI CTGCAG 2 cut(s) 198, 372
PsuI RGATCY 1 cut(s) 1052
PteI GCGCGC 1 cut(s) 129
PvuII CAGCTG 1 cut(s) 361
RsaI GTAC 2 cut(s) 173, 548
RsaNI GTAC 2 cut(s) 172, 547
RseI CAYNNNNRTG 2 cut(s) 45, 743
SacI GAGCTC 1 cut(s) 1258
SaqAI TTAA 2 cut(s) 624, 905
SatI GCNGC 4 cut(s) 63, 197, 792, 1281
Sau3AI GATC 4 cut(s) 939, 1052, 1176, 1293
Sau96I GGNCC 1 cut(s) 433
SchI GAGTC 3 cut(s) 133, 394, 773
ScrFI CCNGG 2 cut(s) 412, 1103
SduI GDGCHC 3 cut(s) 612, 1035, 1258
SexAI ACCWGGT 1 cut(s) 1101
SfaNI GCATC 2 cut(s) 718, 1267
SfcI CTRYAG 2 cut(s) 194, 368
Sfr274I CTCGAG 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 134
SmiMI CAYNNNNRTG 2 cut(s) 45, 743
SmlI CTYRAG 3 cut(s) 134, 343, 594
SmoI CTYRAG 3 cut(s) 134, 343, 594
SphI GCATGC 1 cut(s) 1114
Sse9I AATT 6 cut(s) 664, 848, 909, 1185, 1212, 1260
SsiI CCGC 2 cut(s) 63, 805
SspMI CTAG 4 cut(s) 116, 779, 881, 1142
SstI GAGCTC 1 cut(s) 1258
StyD4I CCNGG 2 cut(s) 410, 1101
TaaI ACNGT 6 cut(s) 16, 85, 171, 285, 553, 862
TaiI ACGT 1 cut(s) 1269
TaqI TCGA 3 cut(s) 54, 135, 1258
TasI AATT 6 cut(s) 664, 848, 909, 1185, 1212, 1260
TatI WGTACW 1 cut(s) 546
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 3 cut(s) 331, 375, 772
Tru1I TTAA 2 cut(s) 624, 905
Tru9I TTAA 2 cut(s) 624, 905
TscAI CASTG 6 cut(s) 52, 234, 372, 556, 891, 1035
TseFI GTSAC 3 cut(s) 10, 19, 47
TseI GCWGC 3 cut(s) 196, 791, 1280
Tsp45I GTSAC 3 cut(s) 10, 19, 47
TspDTI ATGAA 3 cut(s) 100, 637, 831
TspGWI ACGGA 1 cut(s) 174
TspRI CASTG 6 cut(s) 52, 234, 372, 556, 891, 1035
Van91I CCANNNNNTGG 1 cut(s) 181
XapI RAATTY 3 cut(s) 664, 848, 1260
XceI RCATGY 2 cut(s) 181, 1114
XcmI CCANNNNNNNNNTGG 1 cut(s) 32
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 4 cut(s) 116, 779, 881, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.