Rorug07G0310000

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000476
Physical Location & Seq
Reverse (-)
31044208 .. 31048987
4780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0310000.1

Sequence Viewer

Length: 690 bp
ATGGATGTTAATCCCCATGGCTGTGGTGCCATGAATGCCACTTCCCATTTTCCTAACGCCATAATGGGTGATGTAGTCACAAATTTTGCTTCGAATAGCGCTTCAGAAGCTCAGGCCCAACCAAAATCTTCATTGGCTTTCCTTGTTGGTAAGGATTTTGGAGCTATGCCTGCATACATAGTAGCTGCTCTCCATCCTGATCGAGTAGCTGGTCTTATATCACTAGGTGTTCCTTTTATGCTACCAGGTCCGACTGCTGTCCAAAATCATCTTCTTCCTGAAGGTTTCTATGTATCAAGGTGGCAGGAGCCAGGGAGGGCAGAAGCAGATTTTGGCCGCTTTGATGTCAAGTCGGTGGTAAGGAACATCTACATTCTCTTCTCCAGAAGTGAGGTTCCAATAGCTGCTAAGGATCAAGAAATCATGGATTTGTTTGATCCAGCTATTCCTCTACCGCTAGGGTTCTCAGAGGAAGATCTTTCAGTCTATGCATCTCCGTATGAGAAGTCTGGATTCCGTTTTCCTTTGAGAGTTCCATATAGGAGTTTAACAGTGGATTGTGGTTATACTGATCCAAAAGTCTCAGCTCCAACACTGCTTATCCAGGAAGGGGGTCACTTTGTGCAAGAACAACTTCCAGAGAAAATTAATGAGCTAATCCTCACTTTCCTCAACAAACATGGTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

229

Amino Acids

25.02

Weight (kDa)

5.19

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10420 AT5G44050 AT5G65380
fragaria_vesca FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36170 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_7g30730 FvH4_7g30730
malus_domestica MD01G1032800.v1.1 MD08G1190900.v1.1 MD08G1191000.v1.1 MD15G1378200.v1.1 MD15G1378900.v1.1 MD15G1379100.v1.1
prunus_persica Prupe.1G524800_v2.0.a1 Prupe.1G525000_v2.0.a1 Prupe.1G525200_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.6G195500_v2.0.a1
pyrus_communis pycom01g06450 pycom08g16390 pycom15g33900 pycom15g33930 pycom15g33950
rosa_chinensis RchiOBHm_Chr2g0112071 RchiOBHm_Chr7g0237941 RchiOBHm_Chr7g0237951 RchiOBHm_Chr7g0237971 RchiOBHm_Chr7g0238021
rosa_laevigata RLG00000000946 RLG00000000947 RLG00000000949 RLG00000017947
rosa_multiflora Rmu_co8087868.1_g000001 Rmu_co8407183.1_g000001 Rmu_co8459217.1_g000001 Rmu_sc0001339.1_g000020 Rmu_sc0002041.1_g000021 Rmu_sc0002586.1_g000009 Rmu_sc0002877.1_g000026 Rmu_sc0002877.1_g000032
rosa_roxburghii Rroxscaffold_2G00131800 Rroxscaffold_3G00223450 Rroxscaffold_3G00223470 Rroxscaffold_3G00223480
rosa_rugosa Rorug02G0178300 Rorug07G0309600 Rorug07G0309700.1 Rorug07G0309800.1 Rorug07G0309900.1 Rorug07G0310000 Rorug07G0310100
rosa_samantha Rh2AG230300 Rh2BG243500 Rh2DG238200 Rh7AG464600 Rh7AG464700 Rh7AG464900 Rh7BG435300 Rh7BG435600 Rh7CG482800 Rh7CG483100 Rh7CG483500 Rh7DG451500 Rh7DG451700 Rh7DG451800
rosa_wichuraiana Rw2G017840 Rw2G017890 Rw7G038490 Rw7G038500 Rw7G038510 Rw7G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 26
AciI CCGC 2 cut(s) 337, 455
AclWI GGATC 3 cut(s) 420, 431, 566
AcoI YGGCCR 1 cut(s) 334
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 2 cut(s) 87, 300
AdeI CACNNNGTG 2 cut(s) 227, 622
AfeI AGCGCT 1 cut(s) 100
AfiI CCNNNNNNNGG 1 cut(s) 610
AjnI CCWGG 3 cut(s) 244, 310, 603
AjuI GAANNNNNNNTTGG 4 cut(s) 255, 287, 315, 347
AluBI AGCT 8 cut(s) 110, 164, 185, 209, 404, 443, 587, 655
AluI AGCT 8 cut(s) 110, 164, 185, 209, 404, 443, 587, 655
Alw26I GTCTC 1 cut(s) 586
AlwI GGATC 3 cut(s) 420, 431, 566
Aor51HI AGCGCT 1 cut(s) 100
AoxI GGCC 2 cut(s) 114, 334
ApeKI GCWGC 2 cut(s) 185, 404
ApoI RAATTY 1 cut(s) 82
AseI ATTAAT 1 cut(s) 648
Asp700I GAANNNNTTC 1 cut(s) 633
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 115, 248
AsuHPI GGTGA 1 cut(s) 80
AsuII TTCGAA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 26
BbvI GCAGC 2 cut(s) 172, 391
BccI CCATC 1 cut(s) 201
BciT130I CCWGG 3 cut(s) 246, 312, 605
BcoDI GTCTC 1 cut(s) 586
BfaI CTAG 2 cut(s) 224, 458
BfoI RGCGCY 1 cut(s) 102
BglII AGATCT 1 cut(s) 475
BisI GCNGC 3 cut(s) 186, 337, 405
BlsI GCNGC 3 cut(s) 187, 338, 406
Bme1390I CCNGG 3 cut(s) 246, 312, 605
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 2 cut(s) 115, 248
BmiI GGNNCC 3 cut(s) 28, 309, 396
BmrFI CCNGG 3 cut(s) 246, 312, 605
BmsI GCATC 1 cut(s) 500
BoxI GACNNNNGTC 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 367
Bpu10I CCTNAGC 2 cut(s) 111, 408
Bpu14I TTCGAA 1 cut(s) 92
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 16, 311
Bsc4I CCNNNNNNNGG 1 cut(s) 610
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 3 cut(s) 246, 312, 605
BseDI CCNNGG 2 cut(s) 16, 311
BseGI GGATG 2 cut(s) 10, 193
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 610
BseMII CTCAG 3 cut(s) 125, 480, 597
BseXI GCAGC 2 cut(s) 172, 391
BshFI GGCC 2 cut(s) 116, 336
BshNI GGYRCC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 610
BsmAI GTCTC 1 cut(s) 586
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 2 cut(s) 116, 336
Bsp119I TTCGAA 1 cut(s) 92
Bsp143I GATC 5 cut(s) 199, 412, 436, 475, 571
Bsp19I CCATGG 1 cut(s) 16
BspACI CCGC 2 cut(s) 337, 455
BspANI GGCC 2 cut(s) 116, 336
BspCNI CTCAG 3 cut(s) 124, 479, 596
BspLI GGNNCC 3 cut(s) 28, 309, 396
BspPI GGATC 3 cut(s) 420, 431, 566
BspT104I TTCGAA 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 26
BssECI CCNNGG 2 cut(s) 16, 311
BssMI GATC 5 cut(s) 199, 412, 436, 475, 571
BssT1I CCWWGG 1 cut(s) 16
Bst2UI CCWGG 3 cut(s) 246, 312, 605
Bst4CI ACNGT 1 cut(s) 553
Bst6I CTCTTC 1 cut(s) 383
BstBI TTCGAA 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 4 cut(s) 111, 408, 466, 583
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 2 cut(s) 10, 193
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 5 cut(s) 202, 415, 439, 478, 574
BstMAI GTCTC 1 cut(s) 586
BstMBI GATC 5 cut(s) 199, 412, 436, 475, 571
BstMWI GCNNNNNNNGC 3 cut(s) 35, 107, 170
BstNI CCWGG 3 cut(s) 246, 312, 605
BstPAI GACNNNNGTC 1 cut(s) 257
BstSCI CCNGG 3 cut(s) 244, 310, 603
BstV1I GCAGC 2 cut(s) 172, 391
BstX2I RGATCY 1 cut(s) 475
BstXI CCANNNNNNTGG 1 cut(s) 23
BstYI RGATCY 1 cut(s) 475
BsuRI GGCC 2 cut(s) 116, 336
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 2 cut(s) 10, 193
BtsI GCAGTG 1 cut(s) 593
BtsIMutI CAGTG 2 cut(s) 558, 593
Cac8I GCNNGC 1 cut(s) 171
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 115, 248
CsiI ACCWGGT 1 cut(s) 244
CviAII CATG 4 cut(s) 17, 31, 424, 680
DdeI CTNAG 4 cut(s) 111, 408, 466, 583
DpnI GATC 5 cut(s) 201, 414, 438, 477, 573
DpnII GATC 5 cut(s) 199, 412, 436, 475, 571
DraIII CACNNNGTG 2 cut(s) 227, 622
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 383
Eco130I CCWWGG 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 248
Eco47III AGCGCT 1 cut(s) 100
Eco57I CTGAAG 2 cut(s) 87, 300
EcoRII CCWGG 3 cut(s) 244, 310, 603
EcoT14I CCWWGG 1 cut(s) 16
EcoT22I ATGCAT 1 cut(s) 493
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 4 cut(s) 20, 34, 427, 683
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FatI CATG 4 cut(s) 16, 30, 423, 679
Fnu4HI GCNGC 3 cut(s) 186, 337, 405
FokI GGATG 2 cut(s) 17, 180
Fsp4HI GCNGC 3 cut(s) 186, 337, 405
FspBI CTAG 2 cut(s) 224, 458
GlaI GCGC 1 cut(s) 100
GluI GCNGC 3 cut(s) 186, 337, 405
GsuI CTGGAG 1 cut(s) 367
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 2 cut(s) 116, 336
HhaI GCGC 1 cut(s) 101
Hin1II CATG 4 cut(s) 20, 34, 427, 683
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 1 cut(s) 513
HphI GGTGA 1 cut(s) 80
Hpy188I TCNGA 4 cut(s) 106, 252, 469, 689
Hpy188III TCNNGA 6 cut(s) 197, 278, 384, 416, 510, 638
HpyAV CCTTC 2 cut(s) 275, 602
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4V TGCA 3 cut(s) 173, 491, 625
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 107, 170
HpyF3I CTNAG 4 cut(s) 111, 408, 466, 583
Hsp92II CATG 4 cut(s) 20, 34, 427, 683
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 5 cut(s) 199, 412, 436, 475, 571
LmnI GCTCC 3 cut(s) 161, 307, 592
Lsp1109I GCAGC 2 cut(s) 172, 391
LweI GCATC 1 cut(s) 500
MabI ACCWGGT 1 cut(s) 244
MaeI CTAG 2 cut(s) 224, 458
MaeIII GTNAC 2 cut(s) 76, 614
MalI GATC 5 cut(s) 201, 414, 438, 477, 573
MboI GATC 5 cut(s) 199, 412, 436, 475, 571
MboII GAAGA 5 cut(s) 120, 263, 266, 370, 485
MflI RGATCY 1 cut(s) 475
MluCI AATT 2 cut(s) 82, 645
MmeI TCCRAC 2 cut(s) 275, 614
MnlI CCTC 6 cut(s) 309, 385, 459, 463, 671, 680
Mph1103I ATGCAT 1 cut(s) 493
MroXI GAANNNNTTC 1 cut(s) 633
MseI TTAA 3 cut(s) 9, 548, 648
MslI CAYNNNNRTG 1 cut(s) 21
MspR9I CCNGG 3 cut(s) 246, 312, 605
Mva1269I GAATGC 1 cut(s) 40
MvaI CCWGG 3 cut(s) 246, 312, 605
MwoI GCNNNNNNNGC 3 cut(s) 35, 107, 170
NcoI CCATGG 1 cut(s) 16
NdeII GATC 5 cut(s) 199, 412, 436, 475, 571
NlaIII CATG 4 cut(s) 20, 34, 427, 683
NlaIV GGNNCC 3 cut(s) 28, 309, 396
NmuCI GTSAC 2 cut(s) 76, 614
NsiI ATGCAT 1 cut(s) 493
NspV TTCGAA 1 cut(s) 92
PctI GAATGC 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 1 cut(s) 513
PfoI TCCNGGA 1 cut(s) 603
PkrI GCNGC 3 cut(s) 187, 338, 406
PshAI GACNNNNGTC 1 cut(s) 257
PshBI ATTAAT 1 cut(s) 648
Psp6I CCWGG 3 cut(s) 244, 310, 603
PspGI CCWGG 3 cut(s) 244, 310, 603
PspN4I GGNNCC 3 cut(s) 28, 309, 396
PspPI GGNCC 2 cut(s) 115, 248
PsuI RGATCY 1 cut(s) 475
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 3 cut(s) 9, 548, 648
SatI GCNGC 3 cut(s) 186, 337, 405
Sau3AI GATC 5 cut(s) 199, 412, 436, 475, 571
Sau96I GGNCC 2 cut(s) 115, 248
ScrFI CCNGG 3 cut(s) 246, 312, 605
SexAI ACCWGGT 1 cut(s) 244
SfaNI GCATC 1 cut(s) 500
SfuI TTCGAA 1 cut(s) 92
SinI GGWCC 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 21
Sse9I AATT 2 cut(s) 82, 645
SsiI CCGC 2 cut(s) 337, 455
SspMI CTAG 2 cut(s) 224, 458
StyD4I CCNGG 3 cut(s) 244, 310, 603
StyI CCWWGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 553
TaqI TCGA 2 cut(s) 92, 202
TasI AATT 2 cut(s) 82, 645
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 1 cut(s) 513
Tru1I TTAA 3 cut(s) 9, 548, 648
Tru9I TTAA 3 cut(s) 9, 548, 648
TscAI CASTG 2 cut(s) 558, 600
TseFI GTSAC 2 cut(s) 76, 614
TseI GCWGC 2 cut(s) 185, 404
Tsp45I GTSAC 2 cut(s) 76, 614
TspDTI ATGAA 2 cut(s) 47, 120
TspGWI ACGGA 2 cut(s) 486, 506
TspRI CASTG 2 cut(s) 558, 600
VpaK11BI GGWCC 1 cut(s) 248
VspI ATTAAT 1 cut(s) 648
XapI RAATTY 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 2 cut(s) 224, 458
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.