Prupe.1G524800_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000476
Physical Location & Seq
Reverse (-)
43009679 .. 43011951
2273 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G524800.1

Sequence Viewer

Length: 1224 bp
ATGGCAAGTGCGCTAGAGACACTATGTGGGCAGGCTTTTGGGGCAAAGAGGCACCGCATGTTGGGGATATACCTACAAAGGTCATGGATTGTGTTGTTTTTCTGCTGCATTCTGCTGTTACCTATATACATTTTCGCCTCTCCGATCCTGAAACTGTTAGGGCAGGCCGATGACGTGGCGGAGCAAACTGGGGTGGTGTCTTTGTGGCTTCTGCCCTTGCACTTCAGCTATGCGTTTTTGTTCCCACTGCAGAGATTCTTGCAGAGCCAGCTGAAGAACTTTGTGACTTTGTGGGTTTCCTTGGTGGTTTTGGTGTTTCATGCGTTGATAAGTTGGCTTTTTGTGTATGTTTTGGACTTTGGGGTTGTGGGTGCTGCTGTTGCTTTAGATATCTCATGGTGGGTTTTGTGCTTTGGGCTGCTTGGCTATGTTACATGTGGTTGGTGTCCACTGAGCTGGACTGGTTTCTCCATGGAAGCCTTTTATGGGCTTTGGGAATTCGTCAAACTTTCTACTGCTTCTGGTGTCATGCTCTGGTATTACATCTCTCTCTTTTTTATTTCTTTCTTTGTTTTCTTAATCTTGATATTGATGACTGGATACTTACAGAACGCGACTCTTGCTGTGGATGCCTTATCAATTTGCATGACTATAAATGGGTGGGAGCTCATGATTCATCTAGCCTTCTTTGCTGGAACAGGAGTAAGGGTAGCAAATGAGCTGGGAGCTGGAAATGGTCAGGCAGCAAAATTTGCAGCAAAAGTTTCTGCTGCGGAATCCACCTTAATTGCCCTATTCTTCTGCATACTTATTATTATATTCCGTGATCAGTTTGGGTACATATTCACTTCCAGCACTGATGTCCTCCAATCAGTTAGTGAAATGTCTTACCTCTTGGCCGTCACAATTCTACTTAACGGTGTTCAACCCGTCTTATCAGGAGTGGCTGTGGGCTCAGGATGGCAAGCATGGGTGGCATATATAAATCTCTTCTGCTACTACATTATTGGGCTCCCACTTGGATTTGTAATGGGATGGGTCGCCAACTTAGGTGTTATGGGTATATGGGGTGGGATGATCCTTGGTGGAACTGCTGTCCAAACAGTGCTGTTGGCCATCGTGACAACACGACGTGATTGGGAAAAGGAGGCTCAAGAGGCCAGCCAGCGTGTAAATAAGTGGTCAACTCCTAACCCAGATGATCAAACAGAGGAACAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

408

Amino Acids

45.21

Weight (kDa)

5.21

Isoelectric Point (pI)

32.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10420 AT5G44050 AT5G65380
fragaria_vesca FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36170 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_7g30730 FvH4_7g30730
malus_domestica MD01G1032800.v1.1 MD08G1190900.v1.1 MD08G1191000.v1.1 MD15G1378200.v1.1 MD15G1378900.v1.1 MD15G1379100.v1.1
prunus_persica Prupe.1G524800_v2.0.a1 Prupe.1G525000_v2.0.a1 Prupe.1G525200_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.6G195500_v2.0.a1
pyrus_communis pycom01g06450 pycom08g16390 pycom15g33900 pycom15g33930 pycom15g33950
rosa_chinensis RchiOBHm_Chr2g0112071 RchiOBHm_Chr7g0237941 RchiOBHm_Chr7g0237951 RchiOBHm_Chr7g0237971 RchiOBHm_Chr7g0238021
rosa_laevigata RLG00000000946 RLG00000000947 RLG00000000949 RLG00000017947
rosa_multiflora Rmu_co8087868.1_g000001 Rmu_co8407183.1_g000001 Rmu_co8459217.1_g000001 Rmu_sc0001339.1_g000020 Rmu_sc0002041.1_g000021 Rmu_sc0002586.1_g000009 Rmu_sc0002877.1_g000026 Rmu_sc0002877.1_g000032
rosa_roxburghii Rroxscaffold_2G00131800 Rroxscaffold_3G00223450 Rroxscaffold_3G00223470 Rroxscaffold_3G00223480
rosa_rugosa Rorug02G0178300 Rorug07G0309600 Rorug07G0309700.1 Rorug07G0309800.1 Rorug07G0309900.1 Rorug07G0310000 Rorug07G0310100
rosa_samantha Rh2AG230300 Rh2BG243500 Rh2DG238200 Rh7AG464600 Rh7AG464700 Rh7AG464900 Rh7BG435300 Rh7BG435600 Rh7CG482800 Rh7CG483100 Rh7CG483500 Rh7DG451500 Rh7DG451700 Rh7DG451800
rosa_wichuraiana Rw2G017840 Rw2G017890 Rw7G038490 Rw7G038500 Rw7G038510 Rw7G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 51
AccII CGCG 1 cut(s) 614
AciI CCGC 3 cut(s) 55, 179, 773
AclWI GGATC 2 cut(s) 139, 1072
AcoI YGGCCR 2 cut(s) 897, 1113
AcsI RAATTY 2 cut(s) 497, 749
AcuI CTGAAG 2 cut(s) 208, 293
AdeI CACNNNGTG 2 cut(s) 26, 1133
AfaI GTAC 1 cut(s) 839
AfiI CCNNNNNNNGG 2 cut(s) 61, 486
AflIII ACRYGT 1 cut(s) 434
AgsI TTSAA 1 cut(s) 926
AjiI CACGTC 2 cut(s) 175, 1133
AluBI AGCT 6 cut(s) 228, 271, 456, 667, 721, 728
AluI AGCT 6 cut(s) 228, 271, 456, 667, 721, 728
Alw21I GWGCWC 1 cut(s) 669
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 2 cut(s) 139, 1072
AoxI GGCC 4 cut(s) 165, 897, 1113, 1158
ApeKI GCWGC 6 cut(s) 105, 374, 418, 743, 755, 770
ApoI RAATTY 2 cut(s) 497, 749
AspLEI GCGC 1 cut(s) 13
BalI TGGCCA 1 cut(s) 1115
BanI GGYRCC 1 cut(s) 51
BanII GRGCYC 3 cut(s) 669, 956, 1014
Bbv12I GWGCWC 1 cut(s) 669
BbvI GCAGC 6 cut(s) 92, 361, 405, 755, 757, 767
BccI CCATC 3 cut(s) 954, 1029, 1124
BceAI ACGGC 1 cut(s) 884
BciVI GTATCC 1 cut(s) 593
BclI TGATCA 2 cut(s) 826, 1201
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 2 cut(s) 14, 680
BfmI CTRYAG 1 cut(s) 248
BfuI GTATCC 1 cut(s) 593
BisI GCNGC 6 cut(s) 106, 375, 419, 744, 756, 771
BlsI GCNGC 6 cut(s) 107, 376, 420, 745, 757, 772
BmgBI CACGTC 2 cut(s) 175, 1133
BmiI GGNNCC 2 cut(s) 53, 1013
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 1 cut(s) 619
BmuI ACTGGG 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 955
BpuEI CTTGAG 1 cut(s) 1137
BsaJI CCNNGG 3 cut(s) 300, 471, 1081
BsaXI ACNNNNNCTCC 4 cut(s) 693, 723, 933, 963
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 486
Bse1I ACTGG 3 cut(s) 193, 466, 601
BseDI CCNNGG 3 cut(s) 300, 471, 1081
BseGI GGATG 4 cut(s) 634, 965, 1040, 1080
BseLI CCNNNNNNNGG 2 cut(s) 61, 486
BseMII CTCAG 2 cut(s) 443, 969
BseNI ACTGG 3 cut(s) 193, 466, 601
BseXI GCAGC 6 cut(s) 92, 361, 405, 755, 757, 767
BseYI CCCAGC 1 cut(s) 721
Bsh1236I CGCG 1 cut(s) 614
BshFI GGCC 4 cut(s) 167, 899, 1115, 1160
BshNI GGYRCC 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 669
BslI CCNNNNNNNGG 2 cut(s) 61, 486
BsmAI GTCTC 1 cut(s) 11
BsmI GAATGC 1 cut(s) 108
BsnI GGCC 4 cut(s) 167, 899, 1115, 1160
Bsp1286I GDGCHC 3 cut(s) 669, 956, 1014
Bsp143I GATC 4 cut(s) 144, 826, 1077, 1201
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 3 cut(s) 55, 179, 773
BspANI GGCC 4 cut(s) 167, 899, 1115, 1160
BspCNI CTCAG 2 cut(s) 444, 968
BspFNI CGCG 1 cut(s) 614
BspHI TCATGA 1 cut(s) 669
BspLI GGNNCC 2 cut(s) 53, 1013
BspMAI CTGCAG 1 cut(s) 252
BspPI GGATC 2 cut(s) 139, 1072
BspT107I GGYRCC 1 cut(s) 51
BsrI ACTGG 3 cut(s) 193, 466, 601
BssECI CCNNGG 3 cut(s) 300, 471, 1081
BssMI GATC 4 cut(s) 144, 826, 1077, 1201
BssT1I CCWWGG 3 cut(s) 300, 471, 1081
Bst4CI ACNGT 3 cut(s) 156, 920, 1105
Bst6I CTCTTC 1 cut(s) 995
BstAPI GCANNNNNTGC 1 cut(s) 752
BstC8I GCNNGC 6 cut(s) 33, 165, 269, 966, 1162, 1166
BstDEI CTNAG 3 cut(s) 452, 955, 1048
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 4 cut(s) 634, 965, 1040, 1080
BstFNI CGCG 1 cut(s) 614
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 4 cut(s) 147, 829, 1080, 1204
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 4 cut(s) 144, 826, 1077, 1201
BstMWI GCNNNNNNNGC 9 cut(s) 41, 268, 380, 620, 629, 689, 752, 974, 1157
BstNSI RCATGY 2 cut(s) 61, 438
BstSFI CTRYAG 1 cut(s) 248
BstUI CGCG 1 cut(s) 614
BstV1I GCAGC 6 cut(s) 92, 361, 405, 755, 757, 767
BstXI CCANNNNNNTGG 1 cut(s) 456
BsuI GTATCC 1 cut(s) 593
BsuRI GGCC 4 cut(s) 167, 899, 1115, 1160
BtgI CCRYGG 1 cut(s) 471
BtrI CACGTC 2 cut(s) 175, 1133
BtsCI GGATG 4 cut(s) 634, 965, 1040, 1080
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 4 cut(s) 245, 449, 855, 1110
Cac8I GCNNGC 6 cut(s) 33, 165, 269, 966, 1162, 1166
CciI TCATGA 1 cut(s) 669
CfoI GCGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 838
CspCI CAANNNNNGTGG 2 cut(s) 769, 804
CviQI GTAC 1 cut(s) 838
DdeI CTNAG 3 cut(s) 452, 955, 1048
DpnI GATC 4 cut(s) 146, 828, 1079, 1203
DpnII GATC 4 cut(s) 144, 826, 1077, 1201
DraIII CACNNNGTG 2 cut(s) 26, 1133
EaeI YGGCCR 2 cut(s) 897, 1113
Eam1104I CTCTTC 1 cut(s) 995
EarI CTCTTC 1 cut(s) 995
EciI GGCGGA 1 cut(s) 194
Ecl136II GAGCTC 1 cut(s) 667
Eco130I CCWWGG 3 cut(s) 300, 471, 1081
Eco24I GRGCYC 3 cut(s) 669, 956, 1014
Eco32I GATATC 1 cut(s) 391
Eco53kI GAGCTC 1 cut(s) 667
Eco57I CTGAAG 2 cut(s) 208, 293
EcoICRI GAGCTC 1 cut(s) 667
EcoRI GAATTC 1 cut(s) 497
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 3 cut(s) 300, 471, 1081
EcoT38I GRGCYC 3 cut(s) 669, 956, 1014
ErhI CCWWGG 3 cut(s) 300, 471, 1081
FbaI TGATCA 2 cut(s) 826, 1201
Fnu4HI GCNGC 6 cut(s) 106, 375, 419, 744, 756, 771
FokI GGATG 4 cut(s) 641, 972, 1047, 1087
FriOI GRGCYC 3 cut(s) 669, 956, 1014
Fsp4HI GCNGC 6 cut(s) 106, 375, 419, 744, 756, 771
FspBI CTAG 2 cut(s) 14, 680
GlaI GCGC 1 cut(s) 12
GluI GCNGC 6 cut(s) 106, 375, 419, 744, 756, 771
GsaI CCCAGC 1 cut(s) 725
HaeIII GGCC 4 cut(s) 167, 899, 1115, 1160
HhaI GCGC 1 cut(s) 13
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HincII GTYRAC 1 cut(s) 1185
HindII GTYRAC 1 cut(s) 1185
HinfI GANTC 4 cut(s) 255, 616, 673, 776
Hpy166II GTNNAC 2 cut(s) 449, 1185
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 7 cut(s) 148, 583, 670, 939, 957, 1120, 1154
Hpy8I GTNNAC 2 cut(s) 449, 1185
Hpy99I CGWCG 1 cut(s) 1134
HpyAV CCTTC 1 cut(s) 694
HpyCH4III ACNGT 3 cut(s) 156, 920, 1105
HpyCH4IV ACGT 2 cut(s) 174, 1132
HpyCH4V TGCA 7 cut(s) 108, 220, 250, 262, 645, 755, 804
HpyF10VI GCNNNNNNNGC 9 cut(s) 41, 268, 380, 620, 629, 689, 752, 974, 1157
HpyF3I CTNAG 3 cut(s) 452, 955, 1048
HpySE526I ACGT 2 cut(s) 174, 1132
HspAI GCGC 1 cut(s) 11
Ksp22I TGATCA 2 cut(s) 826, 1201
Kzo9I GATC 4 cut(s) 144, 826, 1077, 1201
LmnI GCTCC 4 cut(s) 181, 664, 725, 1017
Lsp1109I GCAGC 6 cut(s) 92, 361, 405, 755, 757, 767
LweI GCATC 1 cut(s) 619
MaeI CTAG 2 cut(s) 14, 680
MaeII ACGT 2 cut(s) 174, 1132
MaeIII GTNAC 5 cut(s) 117, 283, 430, 901, 1120
MalI GATC 4 cut(s) 146, 828, 1079, 1203
MboI GATC 4 cut(s) 144, 826, 1077, 1201
MboII GAAGA 3 cut(s) 286, 790, 982
MhlI GDGCHC 3 cut(s) 669, 956, 1014
MlsI TGGCCA 1 cut(s) 1115
MluCI AATT 5 cut(s) 497, 639, 749, 786, 906
MluNI TGGCCA 1 cut(s) 1115
MlyI GAGTC 1 cut(s) 610
MnlI CCTC 7 cut(s) 42, 148, 875, 902, 1141, 1150, 1204
Mox20I TGGCCA 1 cut(s) 1115
MscI TGGCCA 1 cut(s) 1115
MseI TTAA 3 cut(s) 578, 785, 915
Msp20I TGGCCA 1 cut(s) 1115
MspA1I CMGCKG 1 cut(s) 271
Mva1269I GAATGC 1 cut(s) 108
MvnI CGCG 1 cut(s) 614
MwoI GCNNNNNNNGC 9 cut(s) 41, 268, 380, 620, 629, 689, 752, 974, 1157
NcoI CCATGG 1 cut(s) 471
NdeII GATC 4 cut(s) 144, 826, 1077, 1201
NlaIV GGNNCC 2 cut(s) 53, 1013
NmuCI GTSAC 3 cut(s) 283, 901, 1120
NspI RCATGY 2 cut(s) 61, 438
PagI TCATGA 1 cut(s) 669
PciI ACATGT 1 cut(s) 434
PctI GAATGC 1 cut(s) 108
PfeI GAWTC 3 cut(s) 255, 673, 776
PkrI GCNGC 6 cut(s) 107, 376, 420, 745, 757, 772
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
PscI ACATGT 1 cut(s) 434
Psp124BI GAGCTC 1 cut(s) 669
PspFI CCCAGC 1 cut(s) 721
PspN4I GGNNCC 2 cut(s) 53, 1013
PstI CTGCAG 1 cut(s) 252
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 1 cut(s) 839
RsaNI GTAC 1 cut(s) 838
SacI GAGCTC 1 cut(s) 669
SaqAI TTAA 3 cut(s) 578, 785, 915
SatI GCNGC 6 cut(s) 106, 375, 419, 744, 756, 771
Sau3AI GATC 4 cut(s) 144, 826, 1077, 1201
SchI GAGTC 1 cut(s) 610
SduI GDGCHC 3 cut(s) 669, 956, 1014
SfaNI GCATC 1 cut(s) 619
SfcI CTRYAG 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 1152
SmoI CTYRAG 1 cut(s) 1152
Sse9I AATT 5 cut(s) 497, 639, 749, 786, 906
SsiI CCGC 3 cut(s) 55, 179, 773
SspMI CTAG 2 cut(s) 14, 680
SstI GAGCTC 1 cut(s) 669
StyI CCWWGG 3 cut(s) 300, 471, 1081
TaaI ACNGT 3 cut(s) 156, 920, 1105
TaiI ACGT 2 cut(s) 177, 1135
TasI AATT 5 cut(s) 497, 639, 749, 786, 906
TfiI GAWTC 3 cut(s) 255, 673, 776
Tru1I TTAA 3 cut(s) 578, 785, 915
Tru9I TTAA 3 cut(s) 578, 785, 915
TscAI CASTG 4 cut(s) 252, 456, 862, 1110
TseFI GTSAC 3 cut(s) 283, 901, 1120
TseI GCWGC 6 cut(s) 105, 374, 418, 743, 755, 770
Tsp45I GTSAC 3 cut(s) 283, 901, 1120
TspDTI ATGAA 2 cut(s) 308, 665
TspGWI ACGGA 1 cut(s) 812
TspRI CASTG 4 cut(s) 252, 456, 862, 1110
XapI RAATTY 2 cut(s) 497, 749
XceI RCATGY 2 cut(s) 61, 438
XspI CTAG 2 cut(s) 14, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.