Rh7BG435300

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000476
Physical Location & Seq
Forward (+)
49990679 .. 49992039
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG435300.1

Sequence Viewer

Length: 633 bp
ATGGACAACACATATATGTATTACAGCATTAGTAATGCTTTGTCTTTGCAGCATGAGTATCTATGCTTGGGAGTCCATGATTCCACTAGGATTTTTGGCAGCAGTTGGGTATGTGGTCACTGGTTAGTGCGGGTAGCAAATGAACTTGGCGCAAGCAACGCAAAAGGTGCAAAATTTGCAACCACAGTTTCAGTCTTGACCTCCCTAGCAGTGGGACTTCTATTTTGTTTAATAATAATAGTCTTCCATGAGAAGCTTGCAATGATCTTTACGTCCAGCATTCCTGTTATTGCTATGGTCAATGATTTATCAGTCTTGTTGGCATTCACTATTCTCCTCAATTGCATTCAACCAGTGCTCTCAGGGGTAGCAATCGGATCTGGTCGGCAAGCAATAGTAGCTATTGTAAATATAGGTAGCTACTACCTGGTTGGCATGCCTGTTGGGGTTGTTTTAGGATGGTTGCTAATGTTTGGTATCAAGGGCATGTGGGCTGGAATGATCTGTGGAACTGTGGTTCAAACCTTGATACTGATCATTATCACCATGAGATGTGATTGGGAAAAAGAGGCAGAGAGAGCTCGAATTCACATAACAAAGGATGCAGCTTCACCATTGATCTTTGCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

210

Amino Acids

22.81

Weight (kDa)

7.64

Isoelectric Point (pI)

30.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 43 - 150 3.3e-16 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10420 AT5G44050 AT5G65380
fragaria_vesca FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36170 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_7g30730 FvH4_7g30730
malus_domestica MD01G1032800.v1.1 MD08G1190900.v1.1 MD08G1191000.v1.1 MD15G1378200.v1.1 MD15G1378900.v1.1 MD15G1379100.v1.1
prunus_persica Prupe.1G524800_v2.0.a1 Prupe.1G525000_v2.0.a1 Prupe.1G525200_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.6G195500_v2.0.a1
pyrus_communis pycom01g06450 pycom08g16390 pycom15g33900 pycom15g33930 pycom15g33950
rosa_chinensis RchiOBHm_Chr2g0112071 RchiOBHm_Chr7g0237941 RchiOBHm_Chr7g0237951 RchiOBHm_Chr7g0237971 RchiOBHm_Chr7g0238021
rosa_laevigata RLG00000000946 RLG00000000947 RLG00000000949 RLG00000017947
rosa_multiflora Rmu_co8087868.1_g000001 Rmu_co8407183.1_g000001 Rmu_co8459217.1_g000001 Rmu_sc0001339.1_g000020 Rmu_sc0002041.1_g000021 Rmu_sc0002586.1_g000009 Rmu_sc0002877.1_g000026 Rmu_sc0002877.1_g000032
rosa_roxburghii Rroxscaffold_2G00131800 Rroxscaffold_3G00223450 Rroxscaffold_3G00223470 Rroxscaffold_3G00223480
rosa_rugosa Rorug02G0178300 Rorug07G0309600 Rorug07G0309700.1 Rorug07G0309800.1 Rorug07G0309900.1 Rorug07G0310000 Rorug07G0310100
rosa_samantha Rh2AG230300 Rh2BG243500 Rh2DG238200 Rh7AG464600 Rh7AG464700 Rh7AG464900 Rh7BG435300 Rh7BG435600 Rh7CG482800 Rh7CG483100 Rh7CG483500 Rh7DG451500 Rh7DG451700 Rh7DG451800
rosa_wichuraiana Rw2G017840 Rw2G017890 Rw7G038490 Rw7G038500 Rw7G038510 Rw7G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 130
AclWI GGATC 1 cut(s) 385
AcsI RAATTY 2 cut(s) 173, 585
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 2 cut(s) 350, 521
AjnI CCWGG 1 cut(s) 426
AloI GAACNNNNNNTCC 2 cut(s) 501, 533
AluBI AGCT 5 cut(s) 256, 401, 420, 581, 608
AluI AGCT 5 cut(s) 256, 401, 420, 581, 608
Alw21I GWGCWC 2 cut(s) 360, 583
AlwI GGATC 1 cut(s) 385
ApeKI GCWGC 3 cut(s) 49, 99, 605
ApoI RAATTY 2 cut(s) 173, 585
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AspLEI GCGC 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 535, 603
BanII GRGCYC 1 cut(s) 583
BbsI GAAGAC 1 cut(s) 235
Bbv12I GWGCWC 2 cut(s) 360, 583
BbvI GCAGC 3 cut(s) 61, 111, 617
BccI CCATC 1 cut(s) 453
BciT130I CCWGG 1 cut(s) 428
BclI TGATCA 1 cut(s) 534
BfaI CTAG 2 cut(s) 87, 206
BisI GCNGC 3 cut(s) 50, 100, 606
BlsI GCNGC 3 cut(s) 51, 101, 607
Bme1390I CCNGG 1 cut(s) 428
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 1 cut(s) 592
BpiI GAAGAC 1 cut(s) 235
BsaBI GATNNNNATC 2 cut(s) 533, 539
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse1I ACTGG 2 cut(s) 125, 353
Bse3DI GCAATG 1 cut(s) 267
Bse8I GATNNNNATC 2 cut(s) 533, 539
BseBI CCWGG 1 cut(s) 428
BseGI GGATG 2 cut(s) 464, 607
BseJI GATNNNNATC 2 cut(s) 533, 539
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 2 cut(s) 125, 353
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 3 cut(s) 61, 111, 617
BsiHKAI GWGCWC 2 cut(s) 360, 583
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 228
BsmI GAATGC 3 cut(s) 279, 323, 345
Bsp1286I GDGCHC 2 cut(s) 360, 583
Bsp143I GATC 5 cut(s) 264, 377, 501, 534, 618
BspACI CCGC 1 cut(s) 130
BspCNI CTCAG 1 cut(s) 374
BspPI GGATC 1 cut(s) 385
BsrDI GCAATG 1 cut(s) 267
BsrI ACTGG 2 cut(s) 125, 353
BssMI GATC 5 cut(s) 264, 377, 501, 534, 618
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 2 cut(s) 187, 514
BstAPI GCANNNNNTGC 2 cut(s) 167, 176
BstC8I GCNNGC 4 cut(s) 154, 258, 390, 437
BstDEI CTNAG 1 cut(s) 361
BstF5I GGATG 2 cut(s) 464, 607
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 5 cut(s) 267, 380, 504, 537, 621
BstMBI GATC 5 cut(s) 264, 377, 501, 534, 618
BstMWI GCNNNNNNNGC 5 cut(s) 158, 167, 176, 398, 578
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 2 cut(s) 439, 490
BstSCI CCNGG 1 cut(s) 426
BstV1I GCAGC 3 cut(s) 61, 111, 617
BstV2I GAAGAC 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
BtsCI GGATG 2 cut(s) 464, 607
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 3 cut(s) 118, 216, 360
Cac8I GCNNGC 4 cut(s) 154, 258, 390, 437
CfoI GCGC 1 cut(s) 152
CsiI ACCWGGT 1 cut(s) 426
CviAII CATG 6 cut(s) 53, 77, 248, 436, 487, 547
CviJI RGCY 6 cut(s) 256, 401, 420, 494, 581, 608
CviKI_1 RGCY 6 cut(s) 256, 401, 420, 494, 581, 608
DdeI CTNAG 1 cut(s) 361
DpnI GATC 5 cut(s) 266, 379, 503, 536, 620
DpnII GATC 5 cut(s) 264, 377, 501, 534, 618
Ecl136II GAGCTC 1 cut(s) 581
Eco24I GRGCYC 1 cut(s) 583
Eco53kI GAGCTC 1 cut(s) 581
EcoICRI GAGCTC 1 cut(s) 581
EcoRI GAATTC 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 583
FaeI CATG 6 cut(s) 56, 80, 251, 439, 490, 550
FaqI GGGAC 1 cut(s) 228
FatI CATG 6 cut(s) 52, 76, 247, 435, 486, 546
FauI CCCGC 1 cut(s) 123
FbaI TGATCA 1 cut(s) 534
Fnu4HI GCNGC 3 cut(s) 50, 100, 606
FokI GGATG 2 cut(s) 471, 614
FriOI GRGCYC 1 cut(s) 583
Fsp4HI GCNGC 3 cut(s) 50, 100, 606
FspBI CTAG 2 cut(s) 87, 206
GlaI GCGC 1 cut(s) 151
GluI GCNGC 3 cut(s) 50, 100, 606
HhaI GCGC 1 cut(s) 152
Hin1II CATG 6 cut(s) 56, 80, 251, 439, 490, 550
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 2 cut(s) 72, 80
HphI GGTGA 2 cut(s) 535, 603
Hpy188I TCNGA 1 cut(s) 377
Hpy188III TCNNGA 1 cut(s) 196
HpyCH4III ACNGT 2 cut(s) 187, 514
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 6 cut(s) 49, 170, 179, 260, 345, 605
HpyF10VI GCNNNNNNNGC 5 cut(s) 158, 167, 176, 398, 578
HpyF3I CTNAG 1 cut(s) 361
HpySE526I ACGT 1 cut(s) 272
Hsp92II CATG 6 cut(s) 56, 80, 251, 439, 490, 550
HspAI GCGC 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 534
Kzo9I GATC 5 cut(s) 264, 377, 501, 534, 618
Lsp1109I GCAGC 3 cut(s) 61, 111, 617
LweI GCATC 1 cut(s) 592
MabI ACCWGGT 1 cut(s) 426
MaeI CTAG 2 cut(s) 87, 206
MaeII ACGT 1 cut(s) 272
MaeIII GTNAC 1 cut(s) 116
MalI GATC 5 cut(s) 266, 379, 503, 536, 620
MboI GATC 5 cut(s) 264, 377, 501, 534, 618
MboII GAAGA 1 cut(s) 235
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 2 cut(s) 360, 583
MluCI AATT 3 cut(s) 173, 340, 585
MlyI GAGTC 1 cut(s) 81
MnlI CCTC 3 cut(s) 211, 347, 562
MseI TTAA 1 cut(s) 230
MslI CAYNNNNRTG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 428
MunI CAATTG 1 cut(s) 340
Mva1269I GAATGC 3 cut(s) 279, 323, 345
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 5 cut(s) 158, 167, 176, 398, 578
NdeII GATC 5 cut(s) 264, 377, 501, 534, 618
NlaIII CATG 6 cut(s) 56, 80, 251, 439, 490, 550
NmuCI GTSAC 1 cut(s) 116
NspI RCATGY 2 cut(s) 439, 490
PaeI GCATGC 1 cut(s) 439
PctI GAATGC 3 cut(s) 279, 323, 345
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 51, 101, 607
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 583
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PsuI RGATCY 1 cut(s) 377
RseI CAYNNNNRTG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 583
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 3 cut(s) 50, 100, 606
Sau3AI GATC 5 cut(s) 264, 377, 501, 534, 618
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 2 cut(s) 360, 583
SexAI ACCWGGT 1 cut(s) 426
SfaNI GCATC 1 cut(s) 592
SmiMI CAYNNNNRTG 1 cut(s) 14
SphI GCATGC 1 cut(s) 439
Sse9I AATT 3 cut(s) 173, 340, 585
SsiI CCGC 1 cut(s) 130
SspMI CTAG 2 cut(s) 87, 206
SstI GAGCTC 1 cut(s) 583
StyD4I CCNGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 187, 514
TaiI ACGT 1 cut(s) 275
TaqI TCGA 1 cut(s) 583
TasI AATT 3 cut(s) 173, 340, 585
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 3 cut(s) 125, 216, 360
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 3 cut(s) 49, 99, 605
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 156
TspRI CASTG 3 cut(s) 125, 216, 360
XapI RAATTY 2 cut(s) 173, 585
XceI RCATGY 2 cut(s) 439, 490
XspI CTAG 2 cut(s) 87, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.