RchiOBHm_Chr7g0237941

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000476
Physical Location & Seq
Forward (+)
63266597 .. 63268626
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21324

Sequence Viewer

Length: 1011 bp
ATGGCCATTCGATTAATTAACCCGAGGCAGACTCGAAAAAACAGAGTCGGAACAATGAGGGAAGATGAAGACGACCCTCTGGCTCTGTTAATCCCACACCATCAAGAAGACGGTAATCTGATCGAACGTACTTGGTCGGAGTCAAAAAAGCTATGGCAAGTAGCTGCCCCATCCATCTTCAGCCGCCTCGCTATGTTCTCCGTCACCGTCGTCACCCAATCTTTCGCTGGCCACCTCAGTGATCTCGACCTCGCCGCTATCTCCATCGCCACCACCGTCATCATCGCCATTACTTTCGGTTTCATGCTAGGCATGGCCAGCGCGCTCGAGACTCTGTGTGGTCAAGCCTACGGAGCTAAACAGTACCACATGCTGGGGACATATCTGCAGCGTTCTTGGGTAGTTCTATTTCTCTGCGCAGTGTTGCTTTTACCCCTATTTGTGTTTGCTACGCCATTGTTGAAACTCATGGGACAGTCCGAGGTCGTGGCCGAGCAGACTGGTTTAGTTGCCCTCTGGTTGATTCCATTTCACTTGAGCTTCCCATTTCAGCTGACACTGCAGAGATTCTTGCAGAGTCAGCGAAAGACTGGAGTGATTGCCTGGGTTTCTGGAGGGGTTTTGGCCCTCCATGTGTTTGTGAGTTGGGTTTTTGTGTATGAGTTGAGGATTGGGATTGTTGGAACTGCTCTTACTATTGGTTTTGCTTGGTGGCTATCGGTTTTGGGTTTGTTTGTGTGCACTGTTTGTGGTGGGTGTTCGGAAACATGGACTGGTTTTTCAGCTCAAGCTTTTGTTGGGCTCTGGGATTTCTTTAAGCTTTCTTTGGCTTCTGGGTTCATGCTCTTATTGGAGAATTTTTATTTTAGAGTTTTGGTGATAGTGTCTGGATATATACACAATACCGAGATTGCTGTTGATGCCCTTTCCATCTGCATGAGTATCTATGCTTGGGAGTCCATGATTCCACTAGGATTTTTGGCAGCAGTTGGAGTGCGGGTAGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

336

Amino Acids

37.23

Weight (kDa)

6.65

Isoelectric Point (pI)

32.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 57 - 217 8.5e-32 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10420 AT5G44050 AT5G65380
fragaria_vesca FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36170 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_7g30730 FvH4_7g30730
malus_domestica MD01G1032800.v1.1 MD08G1190900.v1.1 MD08G1191000.v1.1 MD15G1378200.v1.1 MD15G1378900.v1.1 MD15G1379100.v1.1
prunus_persica Prupe.1G524800_v2.0.a1 Prupe.1G525000_v2.0.a1 Prupe.1G525200_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.6G195500_v2.0.a1
pyrus_communis pycom01g06450 pycom08g16390 pycom15g33900 pycom15g33930 pycom15g33950
rosa_chinensis RchiOBHm_Chr2g0112071 RchiOBHm_Chr7g0237941 RchiOBHm_Chr7g0237951 RchiOBHm_Chr7g0237971 RchiOBHm_Chr7g0238021
rosa_laevigata RLG00000000946 RLG00000000947 RLG00000000949 RLG00000017947
rosa_multiflora Rmu_co8087868.1_g000001 Rmu_co8407183.1_g000001 Rmu_co8459217.1_g000001 Rmu_sc0001339.1_g000020 Rmu_sc0002041.1_g000021 Rmu_sc0002586.1_g000009 Rmu_sc0002877.1_g000026 Rmu_sc0002877.1_g000032
rosa_roxburghii Rroxscaffold_2G00131800 Rroxscaffold_3G00223450 Rroxscaffold_3G00223470 Rroxscaffold_3G00223480
rosa_rugosa Rorug02G0178300 Rorug07G0309600 Rorug07G0309700.1 Rorug07G0309800.1 Rorug07G0309900.1 Rorug07G0310000 Rorug07G0310100
rosa_samantha Rh2AG230300 Rh2BG243500 Rh2DG238200 Rh7AG464600 Rh7AG464700 Rh7AG464900 Rh7BG435300 Rh7BG435600 Rh7CG482800 Rh7CG483100 Rh7CG483500 Rh7DG451500 Rh7DG451700 Rh7DG451800
rosa_wichuraiana Rw2G017840 Rw2G017890 Rw7G038490 Rw7G038500 Rw7G038510 Rw7G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 418
AccB7I CCANNNNNTGG 1 cut(s) 373
AccII CGCG 1 cut(s) 323
AciI CCGC 3 cut(s) 184, 255, 997
AcoI YGGCCR 4 cut(s) 3, 229, 315, 489
AcsI RAATTY 1 cut(s) 856
AcuI CTGAAG 1 cut(s) 163
AfaI GTAC 2 cut(s) 130, 365
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 1 cut(s) 463
AjnI CCWGG 1 cut(s) 602
AleI CACNNNNGTG 1 cut(s) 237
AluBI AGCT 8 cut(s) 151, 164, 356, 540, 553, 785, 791, 820
AluI AGCT 8 cut(s) 151, 164, 356, 540, 553, 785, 791, 820
Alw21I GWGCWC 1 cut(s) 743
Alw26I GTCTC 1 cut(s) 323
Alw44I GTGCAC 1 cut(s) 739
Ama87I CYCGRG 2 cut(s) 22, 326
AoxI GGCC 5 cut(s) 3, 229, 315, 489, 624
ApaLI GTGCAC 1 cut(s) 739
ApeKI GCWGC 3 cut(s) 164, 388, 983
ApoI RAATTY 1 cut(s) 856
AseI ATTAAT 1 cut(s) 14
AspLEI GCGC 3 cut(s) 323, 325, 419
AspS9I GGNCC 1 cut(s) 625
AsuHPI GGTGA 3 cut(s) 196, 205, 889
AvaI CYCGRG 2 cut(s) 22, 326
BaeGI GKGCMC 1 cut(s) 743
BalI TGGCCA 3 cut(s) 5, 231, 317
BanII GRGCYC 1 cut(s) 804
BbsI GAAGAC 2 cut(s) 75, 114
Bbv12I GWGCWC 1 cut(s) 743
BbvI GCAGC 3 cut(s) 151, 400, 995
BccI CCATC 5 cut(s) 108, 178, 182, 272, 938
BciT130I CCWGG 1 cut(s) 604
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 2 cut(s) 308, 971
BfmI CTRYAG 2 cut(s) 386, 560
BisI GCNGC 5 cut(s) 165, 184, 255, 389, 984
BlsI GCNGC 5 cut(s) 166, 185, 256, 390, 985
Bme1390I CCNGG 1 cut(s) 604
BmeT110I CYCGRG 2 cut(s) 22, 326
BmgT120I GGNCC 1 cut(s) 625
BmrFI CCNGG 1 cut(s) 604
BmsI GCATC 1 cut(s) 910
BpiI GAAGAC 2 cut(s) 75, 114
BplI GAGNNNNNCTC 2 cut(s) 16, 48
BpmI CTGGAG 2 cut(s) 612, 633
BpuEI CTTGAG 2 cut(s) 556, 771
BsaJI CCNNGG 3 cut(s) 23, 480, 603
BsaXI ACNNNNNCTCC 1 cut(s) 984
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 3 cut(s) 505, 595, 778
BseBI CCWGG 1 cut(s) 604
BseDI CCNNGG 3 cut(s) 23, 480, 603
BseGI GGATG 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 250
BseNI ACTGG 3 cut(s) 505, 595, 778
BsePI GCGCGC 1 cut(s) 321
BseSI GKGCMC 1 cut(s) 743
BseXI GCAGC 3 cut(s) 151, 400, 995
BseYI CCCAGC 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 5 cut(s) 5, 231, 317, 491, 626
BsiHKAI GWGCWC 1 cut(s) 743
BsiHKCI CYCGRG 2 cut(s) 22, 326
BslFI GGGAC 2 cut(s) 391, 486
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 1 cut(s) 323
BsmFI GGGAC 2 cut(s) 391, 486
BsnI GGCC 5 cut(s) 5, 231, 317, 491, 626
BsoBI CYCGRG 2 cut(s) 22, 326
Bsp1286I GDGCHC 2 cut(s) 743, 804
Bsp143I GATC 2 cut(s) 120, 241
BspACI CCGC 3 cut(s) 184, 255, 997
BspANI GGCC 5 cut(s) 5, 231, 317, 491, 626
BspCNI CTCAG 1 cut(s) 249
BspFNI CGCG 1 cut(s) 323
BspMAI CTGCAG 2 cut(s) 390, 564
BsrI ACTGG 3 cut(s) 505, 595, 778
BssECI CCNNGG 3 cut(s) 23, 480, 603
BssHII GCGCGC 1 cut(s) 321
BssMI GATC 2 cut(s) 120, 241
Bst2UI CCWGG 1 cut(s) 604
Bst4CI ACNGT 6 cut(s) 113, 208, 277, 363, 477, 745
BstC8I GCNNGC 3 cut(s) 229, 319, 323
BstDEI CTNAG 1 cut(s) 236
BstF5I GGATG 1 cut(s) 170
BstFNI CGCG 1 cut(s) 323
BstHHI GCGC 3 cut(s) 323, 325, 419
BstKTI GATC 2 cut(s) 123, 244
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 2 cut(s) 120, 241
BstMWI GCNNNNNNNGC 5 cut(s) 318, 353, 559, 580, 920
BstNI CCWGG 1 cut(s) 604
BstNSI RCATGY 1 cut(s) 373
BstSCI CCNGG 1 cut(s) 602
BstSFI CTRYAG 2 cut(s) 386, 560
BstSLI GKGCMC 1 cut(s) 743
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 3 cut(s) 151, 400, 995
BstV2I GAAGAC 2 cut(s) 75, 114
BsuRI GGCC 5 cut(s) 5, 231, 317, 491, 626
BtgZI GCGATG 2 cut(s) 250, 268
BtsCI GGATG 1 cut(s) 170
BtsI GCAGTG 2 cut(s) 426, 557
BtsIMutI CAGTG 4 cut(s) 244, 426, 557, 741
Cac8I GCNNGC 3 cut(s) 229, 319, 323
CfoI GCGC 3 cut(s) 323, 325, 419
Cfr13I GGNCC 1 cut(s) 625
Csp6I GTAC 2 cut(s) 129, 364
CviAII CATG 9 cut(s) 304, 313, 370, 469, 632, 768, 841, 937, 961
CviQI GTAC 2 cut(s) 129, 364
DdeI CTNAG 1 cut(s) 236
DpnI GATC 2 cut(s) 122, 243
DpnII GATC 2 cut(s) 120, 241
EaeI YGGCCR 4 cut(s) 3, 229, 315, 489
Eco24I GRGCYC 1 cut(s) 804
Eco57I CTGAAG 1 cut(s) 163
Eco88I CYCGRG 2 cut(s) 22, 326
EcoRII CCWGG 1 cut(s) 602
EcoT38I GRGCYC 1 cut(s) 804
FaeI CATG 9 cut(s) 307, 316, 373, 472, 635, 771, 844, 940, 964
FaqI GGGAC 2 cut(s) 391, 486
FatI CATG 9 cut(s) 303, 312, 369, 468, 631, 767, 840, 936, 960
FauI CCCGC 1 cut(s) 990
Fnu4HI GCNGC 5 cut(s) 165, 184, 255, 389, 984
FokI GGATG 1 cut(s) 157
FriOI GRGCYC 1 cut(s) 804
Fsp4HI GCNGC 5 cut(s) 165, 184, 255, 389, 984
FspBI CTAG 2 cut(s) 308, 971
FspI TGCGCA 1 cut(s) 418
GlaI GCGC 3 cut(s) 322, 324, 418
GluI GCNGC 5 cut(s) 165, 184, 255, 389, 984
GsaI CCCAGC 1 cut(s) 377
GsuI CTGGAG 2 cut(s) 612, 633
HaeIII GGCC 5 cut(s) 5, 231, 317, 491, 626
HhaI GCGC 3 cut(s) 323, 325, 419
Hin1II CATG 9 cut(s) 307, 316, 373, 472, 635, 771, 844, 940, 964
Hin6I GCGC 3 cut(s) 321, 323, 417
HinP1I GCGC 3 cut(s) 321, 323, 417
HindIII AAGCTT 2 cut(s) 789, 818
HinfI GANTC 9 cut(s) 31, 45, 140, 331, 523, 567, 577, 956, 964
HphI GGTGA 3 cut(s) 196, 205, 889
Hpy166II GTNNAC 1 cut(s) 741
Hpy188I TCNGA 5 cut(s) 50, 120, 139, 481, 763
Hpy188III TCNNGA 5 cut(s) 104, 245, 328, 612, 888
Hpy8I GTNNAC 1 cut(s) 741
Hpy99I CGWCG 1 cut(s) 212
HpyCH4III ACNGT 6 cut(s) 113, 208, 277, 363, 477, 745
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 5 cut(s) 388, 562, 574, 741, 936
HpyF10VI GCNNNNNNNGC 5 cut(s) 318, 353, 559, 580, 920
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 9 cut(s) 307, 316, 373, 472, 635, 771, 844, 940, 964
HspAI GCGC 3 cut(s) 321, 323, 417
Kzo9I GATC 2 cut(s) 120, 241
LmnI GCTCC 1 cut(s) 353
Lsp1109I GCAGC 3 cut(s) 151, 400, 995
LweI GCATC 1 cut(s) 910
MaeI CTAG 2 cut(s) 308, 971
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 2 cut(s) 202, 211
MalI GATC 2 cut(s) 122, 243
MboI GATC 2 cut(s) 120, 241
MboII GAAGA 4 cut(s) 74, 80, 119, 169
MhlI GDGCHC 2 cut(s) 743, 804
MlsI TGGCCA 3 cut(s) 5, 231, 317
MluCI AATT 3 cut(s) 15, 856, 1006
MluNI TGGCCA 3 cut(s) 5, 231, 317
MlyI GAGTC 6 cut(s) 25, 54, 149, 325, 586, 965
MmeI TCCRAC 4 cut(s) 28, 117, 661, 970
Mox20I TGGCCA 3 cut(s) 5, 231, 317
MscI TGGCCA 3 cut(s) 5, 231, 317
MseI TTAA 5 cut(s) 14, 18, 89, 816, 1009
MslI CAYNNNNRTG 2 cut(s) 237, 935
Msp20I TGGCCA 3 cut(s) 5, 231, 317
MspA1I CMGCKG 1 cut(s) 553
MspR9I CCNGG 1 cut(s) 604
MvaI CCWGG 1 cut(s) 604
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 5 cut(s) 318, 353, 559, 580, 920
NdeII GATC 2 cut(s) 120, 241
NlaIII CATG 9 cut(s) 307, 316, 373, 472, 635, 771, 844, 940, 964
NmeAIII GCCGAG 1 cut(s) 517
NmuCI GTSAC 2 cut(s) 202, 211
NsbI TGCGCA 1 cut(s) 418
NspI RCATGY 1 cut(s) 373
OliI CACNNNNGTG 1 cut(s) 237
PacI TTAATTAA 1 cut(s) 18
PaeR7I CTCGAG 1 cut(s) 326
PauI GCGCGC 1 cut(s) 321
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PfeI GAWTC 3 cut(s) 523, 567, 964
PflMI CCANNNNNTGG 1 cut(s) 373
PkrI GCNGC 5 cut(s) 166, 185, 256, 390, 985
PleI GAGTC 6 cut(s) 25, 53, 148, 325, 585, 964
PpsI GAGTC 6 cut(s) 25, 53, 148, 325, 585, 964
PshBI ATTAAT 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 602
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 602
PspPI GGNCC 1 cut(s) 625
PsrI GAACNNNNNNTAC 2 cut(s) 676, 708
PstI CTGCAG 2 cut(s) 390, 564
PteI GCGCGC 1 cut(s) 321
PvuII CAGCTG 1 cut(s) 553
RsaI GTAC 2 cut(s) 130, 365
RsaNI GTAC 2 cut(s) 129, 364
RseI CAYNNNNRTG 2 cut(s) 237, 935
SaqAI TTAA 5 cut(s) 14, 18, 89, 816, 1009
SatI GCNGC 5 cut(s) 165, 184, 255, 389, 984
Sau3AI GATC 2 cut(s) 120, 241
Sau96I GGNCC 1 cut(s) 625
SchI GAGTC 6 cut(s) 25, 54, 149, 325, 586, 965
ScrFI CCNGG 1 cut(s) 604
SduI GDGCHC 2 cut(s) 743, 804
SfaNI GCATC 1 cut(s) 910
SfcI CTRYAG 2 cut(s) 386, 560
Sfr274I CTCGAG 1 cut(s) 326
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 2 cut(s) 237, 935
SmlI CTYRAG 3 cut(s) 326, 535, 786
SmoI CTYRAG 3 cut(s) 326, 535, 786
Sse9I AATT 3 cut(s) 15, 856, 1006
SsiI CCGC 3 cut(s) 184, 255, 997
SspMI CTAG 2 cut(s) 308, 971
StyD4I CCNGG 1 cut(s) 602
TaaI ACNGT 6 cut(s) 113, 208, 277, 363, 477, 745
TaiI ACGT 1 cut(s) 130
TaqI TCGA 5 cut(s) 10, 34, 123, 246, 327
TasI AATT 3 cut(s) 15, 856, 1006
TauI GCSGC 2 cut(s) 186, 257
TfiI GAWTC 3 cut(s) 523, 567, 964
Tru1I TTAA 5 cut(s) 14, 18, 89, 816, 1009
Tru9I TTAA 5 cut(s) 14, 18, 89, 816, 1009
TscAI CASTG 4 cut(s) 244, 426, 564, 748
TseFI GTSAC 2 cut(s) 202, 211
TseI GCWGC 3 cut(s) 164, 388, 983
Tsp45I GTSAC 2 cut(s) 202, 211
TspDTI ATGAA 3 cut(s) 81, 292, 829
TspGWI ACGGA 2 cut(s) 190, 366
TspRI CASTG 4 cut(s) 244, 426, 564, 748
Van91I CCANNNNNTGG 1 cut(s) 373
VneI GTGCAC 1 cut(s) 739
VspI ATTAAT 1 cut(s) 14
XapI RAATTY 1 cut(s) 856
XceI RCATGY 1 cut(s) 373
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XhoI CTCGAG 1 cut(s) 326
XspI CTAG 2 cut(s) 308, 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.