Prupe.6G195500_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
20307213 .. 20314159
6947 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G195500.1

Sequence Viewer

Length: 1479 bp
ATGGCAAGCAACAGTGCACTAGTGGAGGCGGAGGTTCCTTTGTTGGATGATATAGCTTCAACCGTCCGATCAAAACATGAACACAGTGATGATGAAGATCAAGGCACTCTTGCAAGGAGATCTTGGATTGAGTCAAAGAAGTTGTGGCACATAGTTGGTCCAGCAATCTTTAGCCGTGTTGCGTCTTATTCCATGCTGGTTATAACTCAAGCCTTTGCTGGTCATCTTGGTGACCTTGAGCTTGCTGCAATCTCCATTGCCAATAATGTCATAGTTGGTTTTGATTTTGGTCTCTTGTTGGGGATGGCAAGTGCTTTAGAAACACTATGTGGGCAAGCTTATGGGGCCAAGAGGTACTATATGCTTGGAGTTTACATGCAAAGATCATGGATCGTTTTGTTCTTGTGCTGTATTCTGCTTTTGCCAATTTATCTGTTTGCCTCTCCATTTCTAAAGCTTTTGGGGCAACCCACAGAAGTAGCAGAGCTATCTGGGATTGTGGCCATGAGCATGATTCCACTTCACTTCAGCTTTGCTTTTCAGTTCCCATTGCAGAGGTTCTTACAGAGCCAGCTGAAGACAGGCGTGATTGCTTGGGTGTCTCTGCTTGCTCTTGCAGTGCATGTGTTTGTGAGCTGGTTTTTTGTGTATAGGCTTCACTTTGGTGTGATTGGTACTGCAATTACCATAAACTTTTCTTGGTGGGTTTTGGTGTTTGGGCTTCTGGGTTACACTGTTTGTGGTGGTTGCCCCTTGACTTGGGCTGGTTTCTCCATGGAAGCTTTTTCTGGTCTCTGGGAATTTACCAAACTTTCTGCTGCTTCTGGTGTTATGCTCTGCCTGGAGAGTTGGTACTACAGAATACTGATCTTGATGACTGGGAATCTACAGAATGCAGAGATAGCTGTGGATGCTTTGTCTATATGCATGACGATCAATGGCTGGGAGATGATGATTCCTCTGGCTTTTTTCGCAGGAACTGGAGTGAGGGTTGCAAATGAGCTTGGAGCTGGGAGTGGGAAGAGAGCCAAGTTTGCCACCAAAGTGGCAGTTGTTACATCAATTATAATTGGCCTCTTCTTCTGGCTCCTGATCATGATGTTCCACAAAGAGGTCGGCTATATATTTACAACTAGTGAAGCTGTACTTACTGAAGTCAGCAGCCTCTCCCTCCTATTAGCCTTCACAATTCTCCTCAACAGTGTTCAACCAGTTCTCTCTGGAGTAGCTGTGGGGTCCGGTTGGCAATCTTATGTGGCATACATAAACTTGGGTTGCTATTATCTCATTGGGGTTCCTCTTGGGTTTTTAATGGGATGGGCTTTCCATCAAGGAGTTATGGGAATTTGGGCTGGAATGATCTTTGGAGGGACAGCAGTCCAAACCTTGATATTGGCCATTATCACCATTCGATGCGACTGGGAAAAAGAGGCAGAGAAAGCAACCATGCACATATTGAAGTGGACAGACAAAAAATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

493

Amino Acids

54.16

Weight (kDa)

6.37

Isoelectric Point (pI)

31.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10420 AT5G44050 AT5G65380
fragaria_vesca FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36170 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_7g30730 FvH4_7g30730
malus_domestica MD01G1032800.v1.1 MD08G1190900.v1.1 MD08G1191000.v1.1 MD15G1378200.v1.1 MD15G1378900.v1.1 MD15G1379100.v1.1
prunus_persica Prupe.1G524800_v2.0.a1 Prupe.1G525000_v2.0.a1 Prupe.1G525200_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.6G195500_v2.0.a1
pyrus_communis pycom01g06450 pycom08g16390 pycom15g33900 pycom15g33930 pycom15g33950
rosa_chinensis RchiOBHm_Chr2g0112071 RchiOBHm_Chr7g0237941 RchiOBHm_Chr7g0237951 RchiOBHm_Chr7g0237971 RchiOBHm_Chr7g0238021
rosa_laevigata RLG00000000946 RLG00000000947 RLG00000000949 RLG00000017947
rosa_multiflora Rmu_co8087868.1_g000001 Rmu_co8407183.1_g000001 Rmu_co8459217.1_g000001 Rmu_sc0001339.1_g000020 Rmu_sc0002041.1_g000021 Rmu_sc0002586.1_g000009 Rmu_sc0002877.1_g000026 Rmu_sc0002877.1_g000032
rosa_roxburghii Rroxscaffold_2G00131800 Rroxscaffold_3G00223450 Rroxscaffold_3G00223470 Rroxscaffold_3G00223480
rosa_rugosa Rorug02G0178300 Rorug07G0309600 Rorug07G0309700.1 Rorug07G0309800.1 Rorug07G0309900.1 Rorug07G0310000 Rorug07G0310100
rosa_samantha Rh2AG230300 Rh2BG243500 Rh2DG238200 Rh7AG464600 Rh7AG464700 Rh7AG464900 Rh7BG435300 Rh7BG435600 Rh7CG482800 Rh7CG483100 Rh7CG483500 Rh7DG451500 Rh7DG451700 Rh7DG451800
rosa_wichuraiana Rw2G017840 Rw2G017890 Rw7G038490 Rw7G038500 Rw7G038510 Rw7G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 203, 1067
AciI CCGC 1 cut(s) 29
AclWI GGATC 1 cut(s) 398
AcoI YGGCCR 2 cut(s) 501, 1395
AcsI RAATTY 2 cut(s) 800, 1344
AcuI CTGAAG 3 cut(s) 511, 596, 1173
AdeI CACNNNGTG 1 cut(s) 329
AfaI GTAC 4 cut(s) 356, 676, 854, 1146
AfiI CCNNNNNNNGG 2 cut(s) 759, 1111
AgsI TTSAA 3 cut(s) 60, 1208, 1459
AhlI ACTAGT 2 cut(s) 19, 1133
AjnI CCWGG 1 cut(s) 840
AleI CACNNNNGTG 2 cut(s) 663, 1043
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 3 cut(s) 296, 606, 797
Alw44I GTGCAC 1 cut(s) 15
AlwI GGATC 1 cut(s) 398
AlwNI CAGNNNCTG 1 cut(s) 980
AoxI GGCC 4 cut(s) 345, 501, 1072, 1395
ApaLI GTGCAC 1 cut(s) 15
ApeKI GCWGC 3 cut(s) 245, 818, 1161
ApoI RAATTY 2 cut(s) 800, 1344
AspS9I GGNCC 3 cut(s) 158, 345, 1236
AsuHPI GGTGA 2 cut(s) 242, 1396
AvaII GGWCC 2 cut(s) 158, 1236
BaeGI GKGCMC 1 cut(s) 19
BalI TGGCCA 2 cut(s) 503, 1397
BbsI GAAGAC 1 cut(s) 584
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 3 cut(s) 232, 805, 1173
BccI CCATC 3 cut(s) 298, 1311, 1335
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 842
BclI TGATCA 1 cut(s) 1092
BcoDI GTCTC 3 cut(s) 296, 606, 797
BcuI ACTAGT 2 cut(s) 19, 1133
BfaI CTAG 2 cut(s) 20, 1134
BfmI CTRYAG 2 cut(s) 856, 887
BglII AGATCT 1 cut(s) 119
BisI GCNGC 3 cut(s) 246, 819, 1162
BlsI GCNGC 3 cut(s) 247, 820, 1163
Bme1390I CCNGG 1 cut(s) 842
Bme18I GGWCC 2 cut(s) 158, 1236
BmgT120I GGNCC 3 cut(s) 158, 345, 1236
BmiI GGNNCC 5 cut(s) 36, 346, 1088, 1237, 1296
BmrFI CCNGG 1 cut(s) 842
BmrI ACTGGG 2 cut(s) 888, 1429
BmsI GCATC 2 cut(s) 901, 1403
BmuI ACTGGG 2 cut(s) 888, 1429
BoxI GACNNNNGTC 1 cut(s) 1376
BpiI GAAGAC 1 cut(s) 584
BpmI CTGGAG 3 cut(s) 863, 1002, 1242
BpuEI CTTGAG 2 cut(s) 192, 257
BsaBI GATNNNNATC 1 cut(s) 96
BsaI GGTCTC 2 cut(s) 296, 797
BsaJI CCNNGG 1 cut(s) 774
BsaWI WCCGGW 1 cut(s) 1238
BsaXI ACNNNNNCTCC 6 cut(s) 836, 866, 975, 1005, 1215, 1245
Bsc4I CCNNNNNNNGG 2 cut(s) 759, 1111
Bse1I ACTGG 4 cut(s) 883, 985, 1211, 1424
Bse3DI GCAATG 2 cut(s) 255, 548
Bse8I GATNNNNATC 1 cut(s) 96
BseBI CCWGG 1 cut(s) 842
BseDI CCNNGG 1 cut(s) 774
BseGI GGATG 4 cut(s) 52, 309, 916, 1322
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 759, 1111
BseMI GCAATG 2 cut(s) 255, 548
BseNI ACTGG 4 cut(s) 883, 985, 1211, 1424
BseRI GAGGAG 1 cut(s) 1184
BseSI GKGCMC 1 cut(s) 19
BseXI GCAGC 3 cut(s) 232, 805, 1173
BseYI CCCAGC 2 cut(s) 942, 1010
BshFI GGCC 4 cut(s) 347, 503, 1074, 1397
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 1239
BslFI GGGAC 1 cut(s) 1384
BslI CCNNNNNNNGG 2 cut(s) 759, 1111
BsmAI GTCTC 3 cut(s) 296, 606, 797
BsmFI GGGAC 1 cut(s) 1384
BsmI GAATGC 1 cut(s) 898
BsnI GGCC 4 cut(s) 347, 503, 1074, 1397
Bso31I GGTCTC 2 cut(s) 296, 797
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 9 cut(s) 68, 97, 119, 383, 390, 867, 933, 1092, 1359
Bsp19I CCATGG 1 cut(s) 774
BspACI CCGC 1 cut(s) 29
BspANI GGCC 4 cut(s) 347, 503, 1074, 1397
BspHI TCATGA 1 cut(s) 1095
BspLI GGNNCC 5 cut(s) 36, 346, 1088, 1237, 1296
BspPI GGATC 1 cut(s) 398
BspTNI GGTCTC 2 cut(s) 296, 797
BsrDI GCAATG 2 cut(s) 255, 548
BsrI ACTGG 4 cut(s) 883, 985, 1211, 1424
BssECI CCNNGG 1 cut(s) 774
BssMI GATC 9 cut(s) 68, 97, 119, 383, 390, 867, 933, 1092, 1359
BssT1I CCWWGG 1 cut(s) 774
Bst2UI CCWGG 1 cut(s) 842
Bst4CI ACNGT 5 cut(s) 14, 64, 86, 736, 1202
Bst6I CTCTTC 2 cut(s) 1016, 1082
BstC8I GCNNGC 5 cut(s) 7, 243, 336, 572, 609
BstDSI CCRYGG 1 cut(s) 774
BstEII GGTNACC 1 cut(s) 230
BstF5I GGATG 4 cut(s) 52, 309, 916, 1322
BstKTI GATC 9 cut(s) 71, 100, 122, 386, 393, 870, 936, 1095, 1362
BstMAI GTCTC 3 cut(s) 296, 606, 797
BstMBI GATC 9 cut(s) 68, 97, 119, 383, 390, 867, 933, 1092, 1359
BstMWI GCNNNNNNNGC 7 cut(s) 344, 463, 902, 911, 971, 1034, 1439
BstNI CCWGG 1 cut(s) 842
BstNSI RCATGY 2 cut(s) 379, 626
BstPAI GACNNNNGTC 1 cut(s) 1376
BstPI GGTNACC 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 840
BstSFI CTRYAG 2 cut(s) 856, 887
BstSLI GKGCMC 1 cut(s) 19
BstV1I GCAGC 3 cut(s) 232, 805, 1173
BstV2I GAAGAC 1 cut(s) 584
BstX2I RGATCY 1 cut(s) 119
BstXI CCANNNNNNTGG 1 cut(s) 1045
BstYI RGATCY 1 cut(s) 119
BsuRI GGCC 4 cut(s) 347, 503, 1074, 1397
BtgI CCRYGG 1 cut(s) 774
BtsCI GGATG 4 cut(s) 52, 309, 916, 1322
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 5 cut(s) 19, 91, 624, 732, 1207
Cac8I GCNNGC 5 cut(s) 7, 243, 336, 572, 609
CaiI CAGNNNCTG 1 cut(s) 980
CciI TCATGA 1 cut(s) 1095
Cfr13I GGNCC 3 cut(s) 158, 345, 1236
CseI GACGC 1 cut(s) 171
Csp6I GTAC 4 cut(s) 355, 675, 853, 1145
CviQI GTAC 4 cut(s) 355, 675, 853, 1145
DpnI GATC 9 cut(s) 70, 99, 121, 385, 392, 869, 935, 1094, 1361
DpnII GATC 9 cut(s) 68, 97, 119, 383, 390, 867, 933, 1092, 1359
DraIII CACNNNGTG 1 cut(s) 329
EaeI YGGCCR 2 cut(s) 501, 1395
Eam1104I CTCTTC 2 cut(s) 1016, 1082
EarI CTCTTC 2 cut(s) 1016, 1082
EciI GGCGGA 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 774
Eco31I GGTCTC 2 cut(s) 296, 797
Eco47I GGWCC 2 cut(s) 158, 1236
Eco57I CTGAAG 3 cut(s) 511, 596, 1173
Eco91I GGTNACC 1 cut(s) 230
EcoO65I GGTNACC 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 840
EcoT14I CCWWGG 1 cut(s) 774
EcoT22I ATGCAT 1 cut(s) 929
ErhI CCWWGG 1 cut(s) 774
FalI AAGNNNNNCTT 6 cut(s) 93, 125, 106, 138, 1131, 1163
FaqI GGGAC 1 cut(s) 1384
FbaI TGATCA 1 cut(s) 1092
Fnu4HI GCNGC 3 cut(s) 246, 819, 1162
FokI GGATG 4 cut(s) 59, 316, 923, 1329
Fsp4HI GCNGC 3 cut(s) 246, 819, 1162
FspBI CTAG 2 cut(s) 20, 1134
GluI GCNGC 3 cut(s) 246, 819, 1162
GsaI CCCAGC 2 cut(s) 946, 1014
GsuI CTGGAG 3 cut(s) 863, 1002, 1242
HaeIII GGCC 4 cut(s) 347, 503, 1074, 1397
HapII CCGG 1 cut(s) 1239
HgaI GACGC 1 cut(s) 171
HindIII AAGCTT 3 cut(s) 336, 455, 780
HinfI GANTC 4 cut(s) 131, 514, 883, 955
HpaII CCGG 1 cut(s) 1239
HphI GGTGA 2 cut(s) 242, 1396
Hpy166II GTNNAC 3 cut(s) 17, 373, 1464
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 4 cut(s) 871, 1090, 1096, 1221
Hpy8I GTNNAC 3 cut(s) 17, 373, 1464
HpyAV CCTTC 1 cut(s) 1192
HpyCH4III ACNGT 5 cut(s) 14, 64, 86, 736, 1202
HpyF10VI GCNNNNNNNGC 7 cut(s) 344, 463, 902, 911, 971, 1034, 1439
Ksp22I TGATCA 1 cut(s) 1092
Kzo9I GATC 9 cut(s) 68, 97, 119, 383, 390, 867, 933, 1092, 1359
LmnI GCTCC 2 cut(s) 1007, 1092
Lsp1109I GCAGC 3 cut(s) 232, 805, 1173
LweI GCATC 2 cut(s) 901, 1403
MaeI CTAG 2 cut(s) 20, 1134
MaeIII GTNAC 3 cut(s) 230, 728, 1054
MalI GATC 9 cut(s) 70, 99, 121, 385, 392, 869, 935, 1094, 1361
MboI GATC 9 cut(s) 68, 97, 119, 383, 390, 867, 933, 1092, 1359
MboII GAAGA 5 cut(s) 107, 589, 1033, 1069, 1072
MflI RGATCY 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 19
MlsI TGGCCA 2 cut(s) 503, 1397
MluCI AATT 7 cut(s) 426, 681, 800, 1062, 1068, 1188, 1344
MluNI TGGCCA 2 cut(s) 503, 1397
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 24
Mox20I TGGCCA 2 cut(s) 503, 1397
Mph1103I ATGCAT 1 cut(s) 929
MscI TGGCCA 2 cut(s) 503, 1397
MseI TTAA 1 cut(s) 1310
MslI CAYNNNNRTG 5 cut(s) 87, 228, 509, 663, 1043
Msp20I TGGCCA 2 cut(s) 503, 1397
MspA1I CMGCKG 1 cut(s) 574
MspI CCGG 1 cut(s) 1239
MspR9I CCNGG 1 cut(s) 842
Mva1269I GAATGC 1 cut(s) 898
MvaI CCWGG 1 cut(s) 842
MwoI GCNNNNNNNGC 7 cut(s) 344, 463, 902, 911, 971, 1034, 1439
NcoI CCATGG 1 cut(s) 774
NdeII GATC 9 cut(s) 68, 97, 119, 383, 390, 867, 933, 1092, 1359
NlaIV GGNNCC 5 cut(s) 36, 346, 1088, 1237, 1296
NmuCI GTSAC 1 cut(s) 230
NsiI ATGCAT 1 cut(s) 929
NspI RCATGY 2 cut(s) 379, 626
OliI CACNNNNGTG 2 cut(s) 663, 1043
PagI TCATGA 1 cut(s) 1095
PctI GAATGC 1 cut(s) 898
PfeI GAWTC 3 cut(s) 514, 883, 955
PkrI GCNGC 3 cut(s) 247, 820, 1163
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PshAI GACNNNNGTC 1 cut(s) 1376
PsiI TTATAA 2 cut(s) 203, 1067
Psp6I CCWGG 1 cut(s) 840
PspEI GGTNACC 1 cut(s) 230
PspFI CCCAGC 2 cut(s) 942, 1010
PspGI CCWGG 1 cut(s) 840
PspN4I GGNNCC 5 cut(s) 36, 346, 1088, 1237, 1296
PspPI GGNCC 3 cut(s) 158, 345, 1236
PstNI CAGNNNCTG 1 cut(s) 980
PsuI RGATCY 1 cut(s) 119
PvuII CAGCTG 1 cut(s) 574
RsaI GTAC 4 cut(s) 356, 676, 854, 1146
RsaNI GTAC 4 cut(s) 355, 675, 853, 1145
RseI CAYNNNNRTG 5 cut(s) 87, 228, 509, 663, 1043
SaqAI TTAA 1 cut(s) 1310
SatI GCNGC 3 cut(s) 246, 819, 1162
Sau3AI GATC 9 cut(s) 68, 97, 119, 383, 390, 867, 933, 1092, 1359
Sau96I GGNCC 3 cut(s) 158, 345, 1236
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 842
SduI GDGCHC 1 cut(s) 19
SfaNI GCATC 2 cut(s) 901, 1403
SfcI CTRYAG 2 cut(s) 856, 887
SinI GGWCC 2 cut(s) 158, 1236
SmiMI CAYNNNNRTG 5 cut(s) 87, 228, 509, 663, 1043
SmlI CTYRAG 2 cut(s) 207, 236
SmoI CTYRAG 2 cut(s) 207, 236
SpeI ACTAGT 2 cut(s) 19, 1133
Sse9I AATT 7 cut(s) 426, 681, 800, 1062, 1068, 1188, 1344
SsiI CCGC 1 cut(s) 29
SspMI CTAG 2 cut(s) 20, 1134
StyD4I CCNGG 1 cut(s) 840
StyI CCWWGG 1 cut(s) 774
TaaI ACNGT 5 cut(s) 14, 64, 86, 736, 1202
TaqI TCGA 1 cut(s) 1411
TasI AATT 7 cut(s) 426, 681, 800, 1062, 1068, 1188, 1344
TatI WGTACW 1 cut(s) 1144
TfiI GAWTC 3 cut(s) 514, 883, 955
Tru1I TTAA 1 cut(s) 1310
Tru9I TTAA 1 cut(s) 1310
TscAI CASTG 5 cut(s) 19, 91, 624, 739, 1207
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 3 cut(s) 245, 818, 1161
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 93, 108
TspRI CASTG 5 cut(s) 19, 91, 624, 739, 1207
VneI GTGCAC 1 cut(s) 15
VpaK11BI GGWCC 2 cut(s) 158, 1236
XapI RAATTY 2 cut(s) 800, 1344
XceI RCATGY 2 cut(s) 379, 626
XspI CTAG 2 cut(s) 20, 1134
Zsp2I ATGCAT 1 cut(s) 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.