Rmu_co8407183.1_g000001

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8407183.1
OG0000476
Physical Location & Seq
Reverse (-)
1 .. 1265
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8407183.1_g000001.1.cds

Sequence Viewer

Length: 743 bp
atgttctccgtcaccgtcgtcacccaatccttcgctggccacctcagtgacctcgacctcgccgccatctccatcgccaccaccgtcatcatcgccattactttcggtttcatgctaggcatggccagcgcgctcgagactctgtgtggtcaagcctacggagctaaacagtaccacatgctggggacatatctgcagcgttcttgggtagttctatttctctgcgcagtgttgcttttacccctattggtgtttgctacgccattgttgaaactcatgggactgtccgaggtcgtggccgagcagactggtttagttgccctctggttgattccatttcacttgagcttcccatttcagctgacactgcagagattcttgcagagtcagcgaaagactggagtgattgcctgggtttctggaggggttttggccctccatgtgtttgtgagttgggtttttgtgtatgagttgaggattgggattgttgggactgctcttactattggttttgcttggtggctatcggttttgggtttgtttgtgtacactgtttgtggtgggtgtttggaaacatggactggtttttcagctcaagcttttgttgggctctgggatttctttaagctttctttggcttctgggttcatgctcttagtggagaatttttattttagagttttggtgatagtgtctggatatatgcacaataccgagattgctgttgatgccctttccatctg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

247

Amino Acids

27.16

Weight (kDa)

6.17

Isoelectric Point (pI)

27.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000476)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10420 AT5G44050 AT5G65380
fragaria_vesca FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_1g20090 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36160 FvH4_5g36170 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_5g36191 FvH4_7g30730 FvH4_7g30730
malus_domestica MD01G1032800.v1.1 MD08G1190900.v1.1 MD08G1191000.v1.1 MD15G1378200.v1.1 MD15G1378900.v1.1 MD15G1379100.v1.1
prunus_persica Prupe.1G524800_v2.0.a1 Prupe.1G525000_v2.0.a1 Prupe.1G525200_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.1G525300_v2.0.a1 Prupe.6G195500_v2.0.a1
pyrus_communis pycom01g06450 pycom08g16390 pycom15g33900 pycom15g33930 pycom15g33950
rosa_chinensis RchiOBHm_Chr2g0112071 RchiOBHm_Chr7g0237941 RchiOBHm_Chr7g0237951 RchiOBHm_Chr7g0237971 RchiOBHm_Chr7g0238021
rosa_laevigata RLG00000000946 RLG00000000947 RLG00000000949 RLG00000017947
rosa_multiflora Rmu_co8087868.1_g000001 Rmu_co8407183.1_g000001 Rmu_co8459217.1_g000001 Rmu_sc0001339.1_g000020 Rmu_sc0002041.1_g000021 Rmu_sc0002586.1_g000009 Rmu_sc0002877.1_g000026 Rmu_sc0002877.1_g000032
rosa_roxburghii Rroxscaffold_2G00131800 Rroxscaffold_3G00223450 Rroxscaffold_3G00223470 Rroxscaffold_3G00223480
rosa_rugosa Rorug02G0178300 Rorug07G0309600 Rorug07G0309700.1 Rorug07G0309800.1 Rorug07G0309900.1 Rorug07G0310000 Rorug07G0310100
rosa_samantha Rh2AG230300 Rh2BG243500 Rh2DG238200 Rh7AG464600 Rh7AG464700 Rh7AG464900 Rh7BG435300 Rh7BG435600 Rh7CG482800 Rh7CG483100 Rh7CG483500 Rh7DG451500 Rh7DG451700 Rh7DG451800
rosa_wichuraiana Rw2G017840 Rw2G017890 Rw7G038490 Rw7G038500 Rw7G038510 Rw7G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 226
AccB7I CCANNNNNTGG 1 cut(s) 181
AccII CGCG 1 cut(s) 131
AciI CCGC 1 cut(s) 63
AcoI YGGCCR 3 cut(s) 37, 123, 297
AcsI RAATTY 1 cut(s) 664
AfaI GTAC 2 cut(s) 173, 548
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 1 cut(s) 271
AjnI CCWGG 1 cut(s) 410
AleI CACNNNNGTG 1 cut(s) 45
AluBI AGCT 6 cut(s) 164, 348, 361, 593, 599, 628
AluI AGCT 6 cut(s) 164, 348, 361, 593, 599, 628
Alw26I GTCTC 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 4 cut(s) 37, 123, 297, 432
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 664
AspLEI GCGC 3 cut(s) 131, 133, 227
AspS9I GGNCC 1 cut(s) 433
AsuHPI GGTGA 3 cut(s) 4, 13, 697
AvaI CYCGRG 1 cut(s) 134
BalI TGGCCA 2 cut(s) 39, 125
BanII GRGCYC 1 cut(s) 612
BbvI GCAGC 1 cut(s) 208
BccI CCATC 2 cut(s) 74, 80
BciT130I CCWGG 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 2 cut(s) 194, 368
BisI GCNGC 2 cut(s) 63, 197
BlsI GCNGC 2 cut(s) 64, 198
Bme1390I CCNGG 1 cut(s) 412
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 433
BmrFI CCNGG 1 cut(s) 412
BmsI GCATC 1 cut(s) 718
BpmI CTGGAG 2 cut(s) 420, 441
BpuEI CTTGAG 2 cut(s) 364, 579
BsaJI CCNNGG 2 cut(s) 288, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 3 cut(s) 313, 403, 586
BseBI CCWGG 1 cut(s) 412
BseDI CCNNGG 2 cut(s) 288, 411
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 3 cut(s) 313, 403, 586
BsePI GCGCGC 1 cut(s) 129
BseXI GCAGC 1 cut(s) 208
BseYI CCCAGC 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 4 cut(s) 39, 125, 299, 434
BsiHKCI CYCGRG 1 cut(s) 134
BslFI GGGAC 3 cut(s) 199, 294, 505
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 3 cut(s) 199, 294, 505
BsnI GGCC 4 cut(s) 39, 125, 299, 434
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 612
Bsp1407I TGTACA 1 cut(s) 546
BspACI CCGC 1 cut(s) 63
BspANI GGCC 4 cut(s) 39, 125, 299, 434
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 1 cut(s) 131
BspMAI CTGCAG 2 cut(s) 198, 372
BsrGI TGTACA 1 cut(s) 546
BsrI ACTGG 3 cut(s) 313, 403, 586
BssECI CCNNGG 2 cut(s) 288, 411
BssHII GCGCGC 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 412
Bst4CI ACNGT 5 cut(s) 16, 85, 171, 285, 553
BstAUI TGTACA 1 cut(s) 546
BstC8I GCNNGC 3 cut(s) 37, 127, 131
BstDEI CTNAG 2 cut(s) 44, 655
BstFNI CGCG 1 cut(s) 131
BstHHI GCGC 3 cut(s) 131, 133, 227
BstMAI GTCTC 1 cut(s) 131
BstMWI GCNNNNNNNGC 5 cut(s) 126, 161, 367, 388, 728
BstNI CCWGG 1 cut(s) 412
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 410
BstSFI CTRYAG 2 cut(s) 194, 368
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 208
BsuRI GGCC 4 cut(s) 39, 125, 299, 434
BtgZI GCGATG 2 cut(s) 58, 76
BtsI GCAGTG 2 cut(s) 234, 365
BtsIMutI CAGTG 4 cut(s) 52, 234, 365, 549
Cac8I GCNNGC 3 cut(s) 37, 127, 131
CfoI GCGC 3 cut(s) 131, 133, 227
Cfr13I GGNCC 1 cut(s) 433
Csp6I GTAC 2 cut(s) 172, 547
CviAII CATG 7 cut(s) 112, 121, 178, 277, 440, 576, 649
CviQI GTAC 2 cut(s) 172, 547
DdeI CTNAG 2 cut(s) 44, 655
EaeI YGGCCR 3 cut(s) 37, 123, 297
Eco24I GRGCYC 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 410
EcoT38I GRGCYC 1 cut(s) 612
FaeI CATG 7 cut(s) 115, 124, 181, 280, 443, 579, 652
FaqI GGGAC 3 cut(s) 199, 294, 505
FatI CATG 7 cut(s) 111, 120, 177, 276, 439, 575, 648
Fnu4HI GCNGC 2 cut(s) 63, 197
FriOI GRGCYC 1 cut(s) 612
Fsp4HI GCNGC 2 cut(s) 63, 197
FspBI CTAG 1 cut(s) 116
FspI TGCGCA 1 cut(s) 226
GlaI GCGC 3 cut(s) 130, 132, 226
GluI GCNGC 2 cut(s) 63, 197
GsaI CCCAGC 1 cut(s) 185
GsuI CTGGAG 2 cut(s) 420, 441
HaeIII GGCC 4 cut(s) 39, 125, 299, 434
HhaI GCGC 3 cut(s) 131, 133, 227
Hin1II CATG 7 cut(s) 115, 124, 181, 280, 443, 579, 652
Hin6I GCGC 3 cut(s) 129, 131, 225
HinP1I GCGC 3 cut(s) 129, 131, 225
HindIII AAGCTT 2 cut(s) 597, 626
HinfI GANTC 4 cut(s) 139, 331, 375, 385
HphI GGTGA 3 cut(s) 4, 13, 697
Hpy166II GTNNAC 2 cut(s) 547, 549
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 3 cut(s) 136, 420, 696
Hpy8I GTNNAC 2 cut(s) 547, 549
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 5 cut(s) 16, 85, 171, 285, 553
HpyCH4V TGCA 4 cut(s) 196, 370, 382, 706
HpyF10VI GCNNNNNNNGC 5 cut(s) 126, 161, 367, 388, 728
HpyF3I CTNAG 2 cut(s) 44, 655
Hsp92II CATG 7 cut(s) 115, 124, 181, 280, 443, 579, 652
HspAI GCGC 3 cut(s) 129, 131, 225
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 1 cut(s) 718
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 3 cut(s) 10, 19, 47
MhlI GDGCHC 1 cut(s) 612
MlsI TGGCCA 2 cut(s) 39, 125
MluCI AATT 1 cut(s) 664
MluNI TGGCCA 2 cut(s) 39, 125
MlyI GAGTC 2 cut(s) 133, 394
MnlI CCTC 8 cut(s) 53, 62, 68, 283, 332, 416, 446, 468
Mox20I TGGCCA 2 cut(s) 39, 125
MscI TGGCCA 2 cut(s) 39, 125
MseI TTAA 1 cut(s) 624
MslI CAYNNNNRTG 1 cut(s) 45
Msp20I TGGCCA 2 cut(s) 39, 125
MspA1I CMGCKG 1 cut(s) 361
MspR9I CCNGG 1 cut(s) 412
MvaI CCWGG 1 cut(s) 412
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 5 cut(s) 126, 161, 367, 388, 728
NlaIII CATG 7 cut(s) 115, 124, 181, 280, 443, 579, 652
NmeAIII GCCGAG 1 cut(s) 325
NmuCI GTSAC 3 cut(s) 10, 19, 47
NsbI TGCGCA 1 cut(s) 226
NspI RCATGY 1 cut(s) 181
OliI CACNNNNGTG 1 cut(s) 45
PaeR7I CTCGAG 1 cut(s) 134
PauI GCGCGC 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PfeI GAWTC 2 cut(s) 331, 375
PflMI CCANNNNNTGG 1 cut(s) 181
PkrI GCNGC 2 cut(s) 64, 198
PleI GAGTC 2 cut(s) 133, 393
PpsI GAGTC 2 cut(s) 133, 393
Psp6I CCWGG 1 cut(s) 410
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 1 cut(s) 410
PspPI GGNCC 1 cut(s) 433
PstI CTGCAG 2 cut(s) 198, 372
PteI GCGCGC 1 cut(s) 129
PvuII CAGCTG 1 cut(s) 361
RsaI GTAC 2 cut(s) 173, 548
RsaNI GTAC 2 cut(s) 172, 547
RseI CAYNNNNRTG 1 cut(s) 45
SaqAI TTAA 1 cut(s) 624
SatI GCNGC 2 cut(s) 63, 197
Sau96I GGNCC 1 cut(s) 433
SchI GAGTC 2 cut(s) 133, 394
ScrFI CCNGG 1 cut(s) 412
SduI GDGCHC 1 cut(s) 612
SfaNI GCATC 1 cut(s) 718
SfcI CTRYAG 2 cut(s) 194, 368
Sfr274I CTCGAG 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 45
SmlI CTYRAG 3 cut(s) 134, 343, 594
SmoI CTYRAG 3 cut(s) 134, 343, 594
Sse9I AATT 1 cut(s) 664
SsiI CCGC 1 cut(s) 63
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 410
TaaI ACNGT 5 cut(s) 16, 85, 171, 285, 553
TaqI TCGA 2 cut(s) 54, 135
TasI AATT 1 cut(s) 664
TatI WGTACW 1 cut(s) 546
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 2 cut(s) 331, 375
Tru1I TTAA 1 cut(s) 624
Tru9I TTAA 1 cut(s) 624
TscAI CASTG 4 cut(s) 52, 234, 372, 556
TseFI GTSAC 3 cut(s) 10, 19, 47
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 3 cut(s) 10, 19, 47
TspDTI ATGAA 2 cut(s) 100, 637
TspGWI ACGGA 1 cut(s) 174
TspRI CASTG 4 cut(s) 52, 234, 372, 556
Van91I CCANNNNNTGG 1 cut(s) 181
XapI RAATTY 1 cut(s) 664
XceI RCATGY 1 cut(s) 181
XcmI CCANNNNNNNNNTGG 1 cut(s) 32
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.