FvH4_1g04960

Zinc finger protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
2641460 .. 2644560
3101 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04960.t11

Sequence Viewer

Length: 1266 bp
ATGGAGAAAGGCGAGGCGGAGGAGAAAAGGCCGATTTTCAGAGATATAAGGCGGTATTATTGCGAGTACTGCGGAATTTGTAGATCCAAGAAGACTCTGATTGCTTCTCATAAATTAGCTCAGCACAAGGATGAGATGGAATTGGCAAAGGGTGATGAAGTGGAGGTGGATAAGTCTAATACATGTGAAGAATGTGGTGCCAGTTTCAAGAAGCCTGCGTATCTGAAGCAACATATGTTAAGCCATTCCCTTGAGGAATCAGCTTGTTTAAGAACTATACCGTTTGGATCGCGTGAAGCATTGGATCCCACCAAAGAACTCCAAAATGCGAGAGGGTATGAACTTGAATGGACCAGTACCAGGGGGGAGACCTCCTGTGAAGCTCCGTCAAGTGATCCTCAATCACGCAGTGTTAGTATTAAGAGGCCATATGTTTGCACAATCGATGATTGTCGTTCTACTTATAGAAGAAAGGACCATTTGAACCGTCATCTTCTTCAGCACCAAGGAAAAATCTTTAAGTGTCCAATTGAGAACTGCAAGAGTGAATTTGCTTTTCAAGGTAACGTGAAGAGGCATGTTGTAGAATTTCACAGTGAGGATTGCCCTTCTACTGGCGTTGAAGGTCAGAAGCAGCATGTGTGCCAGGAACCTGGTTGTGGAAAGGTGTTCCAATTTGCTTCGAAGCTGCGGAAACATGAGGATTCTCATGTTAAGCTGGACTCAGTGGAGGCATTCTGCTCTGAACCGGATTGTATGAAATATTTTTCTAATAAGCAATGCCTTCAGGAGCATATTCAGTCCTGCCACACTCATATCGCTTGCGAGATATGTGGGAAGAAGGTGTGGAAAAAGAACATCAGAAGCCATCTCTCTACTCATGAAGAGGGAGCCTCTTCATTGGAAATTAAATGTGAATATGAGGGTTGTCTTCACACATTTACTAAAAAATCAAATCTTCTCCGGCATGTGAAGGCTGTACACCTCCAACAGAAACCTTACGCGTGTAGCTTCTCAGGCTGTGGCAAGACATTCTCATACAAGCATGTCAGAGATAAGCACGAGAATTCTGGATGTCATGTATACGCCTATGGGGATTTTGAAGAGGCTGATGAGCAATTCCGGTCAAGGCCAAGGGGTGGGTGTAAGAGGATATGTCCTACAGTGGAAATGCTTGTGCGTAAAAGGGTTACTCCACCAGATCAATTTGGCCCAGAGACAGAGTTCCTCTCCCAGTTATTCTCGCAAGAAGAAGATGAGCGCTGA

Protein Analysis

422

Amino Acids

48.45

Weight (kDa)

7.9

Isoelectric Point (pI)

60.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000543)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis pycom02g04050 pycom15g36580
rosa_chinensis RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccB7I CCANNNNNTGG 1 cut(s) 1139
AccI GTMKAC 1 cut(s) 1083
AccII CGCG 2 cut(s) 292, 1004
AciI CCGC 4 cut(s) 17, 52, 72, 691
AclWI GGATC 5 cut(s) 78, 295, 299, 312, 389
AcsI RAATTY 4 cut(s) 75, 548, 587, 1066
AcuI CTGAAG 3 cut(s) 245, 482, 770
AdeI CACNNNGTG 1 cut(s) 410
AfaI GTAC 3 cut(s) 68, 358, 981
AfeI AGCGCT 1 cut(s) 1262
AfiI CCNNNNNNNGG 4 cut(s) 360, 614, 659, 1139
AflIII ACRYGT 2 cut(s) 182, 1002
AgsI TTSAA 6 cut(s) 208, 347, 484, 560, 623, 1103
AjnI CCWGG 3 cut(s) 359, 645, 652
AluBI AGCT 6 cut(s) 119, 263, 383, 688, 718, 1011
AluI AGCT 6 cut(s) 119, 263, 383, 688, 718, 1011
Alw26I GTCTC 2 cut(s) 362, 1211
AlwI GGATC 5 cut(s) 78, 295, 299, 312, 389
Aor51HI AGCGCT 1 cut(s) 1262
AoxI GGCC 4 cut(s) 29, 425, 1130, 1210
ApeKI GCWGC 2 cut(s) 634, 688
ApoI RAATTY 4 cut(s) 75, 548, 587, 1066
AspLEI GCGC 1 cut(s) 1263
AspS9I GGNCC 3 cut(s) 351, 475, 1211
AsuHPI GGTGA 1 cut(s) 164
AsuII TTCGAA 1 cut(s) 683
AvaII GGWCC 2 cut(s) 351, 475
BamHI GGATCC 1 cut(s) 304
BanI GGYRCC 1 cut(s) 197
BauI CACGAG 1 cut(s) 1061
BbsI GAAGAC 2 cut(s) 98, 923
BbvI GCAGC 2 cut(s) 646, 675
BccI CCATC 2 cut(s) 130, 876
BciT130I CCWGG 3 cut(s) 361, 647, 654
BcoDI GTCTC 2 cut(s) 362, 1211
BfmI CTRYAG 1 cut(s) 1161
BfoI RGCGCY 1 cut(s) 1264
BisI GCNGC 2 cut(s) 635, 689
BlpI GCTNAGC 1 cut(s) 120
BlsI GCNGC 2 cut(s) 636, 690
BmcAI AGTACT 1 cut(s) 68
Bme1390I CCNGG 3 cut(s) 361, 647, 654
Bme18I GGWCC 2 cut(s) 351, 475
BmgT120I GGNCC 3 cut(s) 351, 475, 1211
BmiI GGNNCC 4 cut(s) 199, 306, 651, 892
BmrFI CCNGG 3 cut(s) 361, 647, 654
BmrI ACTGGG 1 cut(s) 1228
BmuI ACTGGG 1 cut(s) 1228
BpiI GAAGAC 2 cut(s) 98, 923
BplI GAGNNNNNCTC 4 cut(s) 878, 910, 1214, 1246
Bpu1102I GCTNAGC 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 272
Bsa29I ATCGAT 1 cut(s) 444
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 3 cut(s) 360, 505, 1133
BsaWI WCCGGW 2 cut(s) 748, 1122
Bsc4I CCNNNNNNNGG 4 cut(s) 360, 614, 659, 1139
Bse1I ACTGG 4 cut(s) 201, 354, 619, 1234
Bse3DI GCAATG 1 cut(s) 785
BseBI CCWGG 3 cut(s) 361, 647, 654
BseCI ATCGAT 1 cut(s) 444
BseDI CCNNGG 3 cut(s) 360, 505, 1133
BseGI GGATG 2 cut(s) 136, 1079
BseLI CCNNNNNNNGG 4 cut(s) 360, 614, 659, 1139
BseMI GCAATG 1 cut(s) 785
BseMII CTCAG 3 cut(s) 134, 738, 1029
BseNI ACTGG 4 cut(s) 201, 354, 619, 1234
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 646, 675
Bsh1236I CGCG 2 cut(s) 292, 1004
BshFI GGCC 4 cut(s) 31, 427, 1132, 1212
BshNI GGYRCC 1 cut(s) 197
BshVI ATCGAT 1 cut(s) 444
BsiSI CCGG 3 cut(s) 749, 964, 1123
BslI CCNNNNNNNGG 4 cut(s) 360, 614, 659, 1139
BsmAI GTCTC 2 cut(s) 362, 1211
BsmI GAATGC 1 cut(s) 734
BsnI GGCC 4 cut(s) 31, 427, 1132, 1212
Bso31I GGTCTC 1 cut(s) 362
Bsp119I TTCGAA 1 cut(s) 683
Bsp1407I TGTACA 1 cut(s) 979
Bsp143I GATC 5 cut(s) 83, 287, 304, 394, 1201
Bsp1720I GCTNAGC 1 cut(s) 120
BspACI CCGC 4 cut(s) 17, 52, 72, 691
BspANI GGCC 4 cut(s) 31, 427, 1132, 1212
BspCNI CTCAG 3 cut(s) 133, 737, 1028
BspDI ATCGAT 1 cut(s) 444
BspFNI CGCG 2 cut(s) 292, 1004
BspHI TCATGA 1 cut(s) 880
BspLI GGNNCC 4 cut(s) 199, 306, 651, 892
BspPI GGATC 5 cut(s) 78, 295, 299, 312, 389
BspT104I TTCGAA 1 cut(s) 683
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 785
BsrGI TGTACA 1 cut(s) 979
BsrI ACTGG 4 cut(s) 201, 354, 619, 1234
BssECI CCNNGG 3 cut(s) 360, 505, 1133
BssMI GATC 5 cut(s) 83, 287, 304, 394, 1201
BssNAI GTATAC 1 cut(s) 1084
BssSI CACGAG 1 cut(s) 1061
BssT1I CCWWGG 2 cut(s) 505, 1133
Bst1107I GTATAC 1 cut(s) 1084
Bst2BI CACGAG 1 cut(s) 1061
Bst2UI CCWGG 3 cut(s) 361, 647, 654
Bst4CI ACNGT 4 cut(s) 282, 488, 596, 1165
Bst6I CTCTTC 4 cut(s) 566, 879, 901, 1098
BstAUI TGTACA 1 cut(s) 979
BstBI TTCGAA 1 cut(s) 683
BstC8I GCNNGC 2 cut(s) 216, 823
BstDEI CTNAG 3 cut(s) 120, 724, 1015
BstF5I GGATG 2 cut(s) 136, 1079
BstFNI CGCG 2 cut(s) 292, 1004
BstH2I RGCGCY 1 cut(s) 1264
BstHHI GCGC 1 cut(s) 1263
BstKTI GATC 5 cut(s) 86, 290, 307, 397, 1204
BstMAI GTCTC 2 cut(s) 362, 1211
BstMBI GATC 5 cut(s) 83, 287, 304, 394, 1201
BstMWI GCNNNNNNNGC 2 cut(s) 69, 1017
BstNI CCWGG 3 cut(s) 361, 647, 654
BstNSI RCATGY 5 cut(s) 186, 581, 641, 971, 1049
BstSCI CCNGG 3 cut(s) 359, 645, 652
BstSFI CTRYAG 1 cut(s) 1161
BstUI CGCG 2 cut(s) 292, 1004
BstV1I GCAGC 2 cut(s) 646, 675
BstV2I GAAGAC 2 cut(s) 98, 923
BstX2I RGATCY 2 cut(s) 83, 304
BstXI CCANNNNNNTGG 1 cut(s) 653
BstYI RGATCY 2 cut(s) 83, 304
BstZ17I GTATAC 1 cut(s) 1084
Bsu15I ATCGAT 1 cut(s) 444
BsuRI GGCC 4 cut(s) 31, 427, 1132, 1212
BsuTUI ATCGAT 1 cut(s) 444
BtsCI GGATG 2 cut(s) 136, 1079
BtsI GCAGTG 1 cut(s) 415
BtsIMutI CAGTG 4 cut(s) 415, 601, 732, 1170
Cac8I GCNNGC 2 cut(s) 216, 823
CciI TCATGA 1 cut(s) 880
CfoI GCGC 1 cut(s) 1263
Cfr13I GGNCC 3 cut(s) 351, 475, 1211
ClaI ATCGAT 1 cut(s) 444
CsiI ACCWGGT 1 cut(s) 652
Csp6I GTAC 3 cut(s) 67, 357, 980
CviAII CATG 9 cut(s) 183, 578, 638, 698, 710, 881, 968, 1046, 1079
CviQI GTAC 3 cut(s) 67, 357, 980
DdeI CTNAG 3 cut(s) 120, 724, 1015
DpnI GATC 5 cut(s) 85, 289, 306, 396, 1203
DpnII GATC 5 cut(s) 83, 287, 304, 394, 1201
DraIII CACNNNGTG 1 cut(s) 410
Eam1104I CTCTTC 4 cut(s) 566, 879, 901, 1098
EarI CTCTTC 4 cut(s) 566, 879, 901, 1098
EciI GGCGGA 1 cut(s) 32
Eco130I CCWWGG 2 cut(s) 505, 1133
Eco31I GGTCTC 1 cut(s) 362
Eco47I GGWCC 2 cut(s) 351, 475
Eco47III AGCGCT 1 cut(s) 1262
Eco57I CTGAAG 3 cut(s) 245, 482, 770
EcoRI GAATTC 1 cut(s) 1066
EcoRII CCWGG 3 cut(s) 359, 645, 652
EcoT14I CCWWGG 2 cut(s) 505, 1133
ErhI CCWWGG 2 cut(s) 505, 1133
FaeI CATG 9 cut(s) 186, 581, 641, 701, 713, 884, 971, 1049, 1082
FatI CATG 9 cut(s) 182, 577, 637, 697, 709, 880, 967, 1045, 1078
FauNDI CATATG 2 cut(s) 234, 430
FblI GTMKAC 1 cut(s) 1083
Fnu4HI GCNGC 2 cut(s) 635, 689
FokI GGATG 2 cut(s) 143, 1086
Fsp4HI GCNGC 2 cut(s) 635, 689
GlaI GCGC 1 cut(s) 1262
GluI GCNGC 2 cut(s) 635, 689
HaeII RGCGCY 1 cut(s) 1264
HaeIII GGCC 4 cut(s) 31, 427, 1132, 1212
HapII CCGG 3 cut(s) 749, 964, 1123
HhaI GCGC 1 cut(s) 1263
Hin1II CATG 9 cut(s) 186, 581, 641, 701, 713, 884, 971, 1049, 1082
Hin6I GCGC 1 cut(s) 1261
HinP1I GCGC 1 cut(s) 1261
HinfI GANTC 4 cut(s) 94, 257, 704, 722
HpaII CCGG 3 cut(s) 749, 964, 1123
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 2 cut(s) 982, 1084
Hpy188I TCNGA 7 cut(s) 41, 99, 225, 630, 745, 863, 1052
Hpy188III TCNNGA 4 cut(s) 208, 788, 881, 1071
Hpy8I GTNNAC 2 cut(s) 982, 1084
HpyAV CCTTC 5 cut(s) 617, 618, 794, 835, 967
HpyCH4III ACNGT 4 cut(s) 282, 488, 596, 1165
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 2 cut(s) 438, 540
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 1017
HpyF3I CTNAG 3 cut(s) 120, 724, 1015
HpySE526I ACGT 1 cut(s) 567
Hsp92II CATG 9 cut(s) 186, 581, 641, 701, 713, 884, 971, 1049, 1082
HspAI GCGC 1 cut(s) 1261
Kzo9I GATC 5 cut(s) 83, 287, 304, 394, 1201
LmnI GCTCC 3 cut(s) 388, 790, 890
Lsp1109I GCAGC 2 cut(s) 646, 675
MabI ACCWGGT 1 cut(s) 652
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 2 cut(s) 563, 1189
MalI GATC 5 cut(s) 85, 289, 306, 396, 1203
MboI GATC 5 cut(s) 83, 287, 304, 394, 1201
MfeI CAATTG 1 cut(s) 528
MflI RGATCY 2 cut(s) 83, 304
MluI ACGCGT 1 cut(s) 1002
MlyI GAGTC 2 cut(s) 88, 716
MmeI TCCRAC 1 cut(s) 1012
MseI TTAA 6 cut(s) 239, 269, 420, 519, 714, 909
MslI CAYNNNNRTG 1 cut(s) 129
MspI CCGG 3 cut(s) 749, 964, 1123
MspR9I CCNGG 3 cut(s) 361, 647, 654
MunI CAATTG 1 cut(s) 528
Mva1269I GAATGC 1 cut(s) 734
MvaI CCWGG 3 cut(s) 361, 647, 654
MvnI CGCG 2 cut(s) 292, 1004
MwoI GCNNNNNNNGC 2 cut(s) 69, 1017
NdeI CATATG 2 cut(s) 234, 430
NdeII GATC 5 cut(s) 83, 287, 304, 394, 1201
NlaIII CATG 9 cut(s) 186, 581, 641, 701, 713, 884, 971, 1049, 1082
NlaIV GGNNCC 4 cut(s) 199, 306, 651, 892
NspI RCATGY 5 cut(s) 186, 581, 641, 971, 1049
NspV TTCGAA 1 cut(s) 683
PagI TCATGA 1 cut(s) 880
PciI ACATGT 1 cut(s) 182
PctI GAATGC 1 cut(s) 734
PfeI GAWTC 2 cut(s) 257, 704
PflMI CCANNNNNTGG 1 cut(s) 1139
PkrI GCNGC 2 cut(s) 636, 690
PleI GAGTC 2 cut(s) 88, 716
PpsI GAGTC 2 cut(s) 88, 716
PscI ACATGT 1 cut(s) 182
Psp6I CCWGG 3 cut(s) 359, 645, 652
PspGI CCWGG 3 cut(s) 359, 645, 652
PspN4I GGNNCC 4 cut(s) 199, 306, 651, 892
PspPI GGNCC 3 cut(s) 351, 475, 1211
PsuI RGATCY 2 cut(s) 83, 304
RsaI GTAC 3 cut(s) 68, 358, 981
RsaNI GTAC 3 cut(s) 67, 357, 980
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 6 cut(s) 239, 269, 420, 519, 714, 909
SatI GCNGC 2 cut(s) 635, 689
Sau3AI GATC 5 cut(s) 83, 287, 304, 394, 1201
Sau96I GGNCC 3 cut(s) 351, 475, 1211
ScaI AGTACT 1 cut(s) 68
SchI GAGTC 2 cut(s) 88, 716
ScrFI CCNGG 3 cut(s) 361, 647, 654
SexAI ACCWGGT 1 cut(s) 652
SfcI CTRYAG 1 cut(s) 1161
SfuI TTCGAA 1 cut(s) 683
SinI GGWCC 2 cut(s) 351, 475
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
SsiI CCGC 4 cut(s) 17, 52, 72, 691
SspI AATATT 1 cut(s) 764
StyD4I CCNGG 3 cut(s) 359, 645, 652
StyI CCWWGG 2 cut(s) 505, 1133
TaaI ACNGT 4 cut(s) 282, 488, 596, 1165
TaiI ACGT 1 cut(s) 570
TaqI TCGA 2 cut(s) 444, 683
TatI WGTACW 2 cut(s) 66, 979
TfiI GAWTC 2 cut(s) 257, 704
Tru1I TTAA 6 cut(s) 239, 269, 420, 519, 714, 909
Tru9I TTAA 6 cut(s) 239, 269, 420, 519, 714, 909
TscAI CASTG 4 cut(s) 415, 601, 732, 1170
TseI GCWGC 2 cut(s) 634, 688
TspDTI ATGAA 5 cut(s) 171, 354, 773, 888, 897
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 4 cut(s) 415, 601, 732, 1170
Van91I CCANNNNNTGG 1 cut(s) 1139
VpaK11BI GGWCC 2 cut(s) 351, 475
XapI RAATTY 4 cut(s) 75, 548, 587, 1066
XceI RCATGY 5 cut(s) 186, 581, 641, 971, 1049
XmiI GTMKAC 1 cut(s) 1083
ZrmI AGTACT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.