Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Reverse (-)

59478123 .. 59482055

Gene Structure 3933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G034520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCTCATTTGCTACTTTAAAATCTTCTTTACTTCAGTGTCGACGAGTCATCTCACTAATCTACCAAATTATTTGATCCCACTCTGGTTCTATGCCTGTAATGTTCTATATAAAGAGGCTCATATTATCAATGAAAGCACAACTCATTCTCTCAGTTGTTATCTCTGCATCCCAATTTCAAATTTCCTAAAACACTCGCTACCATTTTTTGGTATAATGATGTGGGGTACTTATAGAAGACCATTTGAACCTCATCTTCTCCAGCACCAAGGGAAGCTCTTTAAGAGTGAATTTGCTTTTCAAGGTAACGTGAAGAGGCATGCCGTAGAATATCACTGTGAGGATTGCCCTTCTACTAGTGATGAAGGACAGAAACAGCATGTATGCCAGGAACCTGGTTGTGGAAAGGTATATTTTTCTAATAAGCAACGCTTTAAGGACCATATCCAGTCCTGCCACACTCATATCACTTGCGAGATATGCTGTGGTAAGACATTCTCATACAAGCACGTGAGAGATAAGCATGAGAAGTCTGGATATCATGTATATGCCTATGGGGATTTTGAAGAGGCTGATGAGCAATTCCGGTCTAGGCCAAGGGGTGGGCGTAAGAGGAAGTGTCTCACAGTAGAAATGCTTGTACGAAAAAGGGTTACTCCACCAGATCAATTCGGCCCAGAGACTGAGTTCCTTTCCCAGTTCTTCTCACAAGAGGAGGAAGACGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

243

Amino Acids

28.6

Weight (kDa)

7.21

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	209, 602
AccI	GTMKAC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	70
AcsI	RAATTY	2 cut(s)	181, 290
AcuI	CTGAAG	1 cut(s)	18
AcvI	CACGTG	1 cut(s)	511
AfaI	GTAC	2 cut(s)	229, 642
AfiI	CCNNNNNNNGG	3 cut(s)	209, 401, 602
AgsI	TTSAA	4 cut(s)	180, 248, 302, 566
AhlI	ACTAGT	1 cut(s)	356
AjnI	CCWGG	2 cut(s)	387, 394
AluBI	AGCT	1 cut(s)	277
AluI	AGCT	1 cut(s)	277
Alw26I	GTCTC	2 cut(s)	626, 674
AlwI	GGATC	1 cut(s)	70
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	2 cut(s)	593, 673
ApoI	RAATTY	2 cut(s)	181, 290
AspS9I	GGNCC	2 cut(s)	439, 674
AvaII	GGWCC	1 cut(s)	439
BbrPI	CACGTG	1 cut(s)	511
BbsI	GAAGAC	2 cut(s)	244, 726
BceAI	ACGGC	1 cut(s)	308
BciT130I	CCWGG	2 cut(s)	389, 396
BcoDI	GTCTC	2 cut(s)	626, 674
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	2 cut(s)	357, 591
Bme1390I	CCNGG	2 cut(s)	389, 396
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	2 cut(s)	439, 674
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	2 cut(s)	389, 396
BmrI	ACTGGG	1 cut(s)	691
BmsI	GCATC	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	691
BpiI	GAAGAC	2 cut(s)	244, 726
BpmI	CTGGAG	1 cut(s)	245
BsaAI	YACGTR	1 cut(s)	511
BsaJI	CCNNGG	2 cut(s)	268, 596
BsaWI	WCCGGW	1 cut(s)	585
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 401, 602
Bse1I	ACTGG	2 cut(s)	448, 697
BseBI	CCWGG	2 cut(s)	389, 396
BseDI	CCNNGG	2 cut(s)	268, 596
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	3 cut(s)	209, 401, 602
BseMII	CTCAG	2 cut(s)	166, 675
BseNI	ACTGG	2 cut(s)	448, 697
BseRI	GAGGAG	1 cut(s)	728
BshFI	GGCC	2 cut(s)	595, 675
BsiSI	CCGG	1 cut(s)	586
BslI	CCNNNNNNNGG	3 cut(s)	209, 401, 602
BsmAI	GTCTC	2 cut(s)	626, 674
BsnI	GGCC	2 cut(s)	595, 675
Bsp143I	GATC	2 cut(s)	75, 664
BspANI	GGCC	2 cut(s)	595, 675
BspCNI	CTCAG	2 cut(s)	165, 676
BspLI	GGNNCC	1 cut(s)	393
BspPI	GGATC	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	448, 697
BssECI	CCNNGG	2 cut(s)	268, 596
BssMI	GATC	2 cut(s)	75, 664
BssT1I	CCWWGG	2 cut(s)	268, 596
Bst2UI	CCWGG	2 cut(s)	389, 396
Bst4CI	ACNGT	2 cut(s)	338, 628
Bst6I	CTCTTC	3 cut(s)	308, 561, 720
BstBAI	YACGTR	1 cut(s)	511
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	2 cut(s)	152, 684
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	2 cut(s)	78, 667
BstMAI	GTCTC	2 cut(s)	626, 674
BstMBI	GATC	2 cut(s)	75, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	480
BstNI	CCWGG	2 cut(s)	389, 396
BstNSI	RCATGY	2 cut(s)	323, 383
BstSCI	CCNGG	2 cut(s)	387, 394
BstV2I	GAAGAC	2 cut(s)	244, 726
BstXI	CCANNNNNNTGG	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	595, 675
BtsCI	GGATG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	42, 334
Cac8I	GCNNGC	1 cut(s)	321
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr13I	GGNCC	2 cut(s)	439, 674
CsiI	ACCWGGT	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	228, 641
CviAII	CATG	4 cut(s)	320, 380, 524, 542
CviJI	RGCY	5 cut(s)	119, 277, 572, 595, 675
CviKI_1	RGCY	5 cut(s)	119, 277, 572, 595, 675
CviQI	GTAC	2 cut(s)	228, 641
DdeI	CTNAG	2 cut(s)	152, 684
DpnI	GATC	2 cut(s)	77, 666
DpnII	GATC	2 cut(s)	75, 664
DraI	TTTAAA	1 cut(s)	19
Eam1104I	CTCTTC	3 cut(s)	308, 561, 720
EarI	CTCTTC	3 cut(s)	308, 561, 720
Eco130I	CCWWGG	2 cut(s)	268, 596
Eco32I	GATATC	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	18
Eco72I	CACGTG	1 cut(s)	511
EcoRII	CCWGG	2 cut(s)	387, 394
EcoRV	GATATC	1 cut(s)	539
EcoT14I	CCWWGG	2 cut(s)	268, 596
ErhI	CCWWGG	2 cut(s)	268, 596
FaeI	CATG	4 cut(s)	323, 383, 527, 545
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FatI	CATG	4 cut(s)	319, 379, 523, 541
FblI	GTMKAC	1 cut(s)	41
FokI	GGATG	1 cut(s)	155
FspBI	CTAG	2 cut(s)	357, 591
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	2 cut(s)	595, 675
HapII	CCGG	1 cut(s)	586
Hin1II	CATG	4 cut(s)	323, 383, 527, 545
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	586
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188III	TCNNGA	1 cut(s)	534
Hpy8I	GTNNAC	1 cut(s)	42
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	2 cut(s)	359, 360
HpyCH4III	ACNGT	2 cut(s)	338, 628
HpyCH4IV	ACGT	2 cut(s)	309, 510
HpyCH4V	TGCA	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	480
HpyF3I	CTNAG	2 cut(s)	152, 684
HpySE526I	ACGT	2 cut(s)	309, 510
Hsp92II	CATG	4 cut(s)	323, 383, 527, 545
Kzo9I	GATC	2 cut(s)	75, 664
LweI	GCATC	1 cut(s)	177
MabI	ACCWGGT	1 cut(s)	394
MaeI	CTAG	2 cut(s)	357, 591
MaeII	ACGT	2 cut(s)	309, 510
MaeIII	GTNAC	2 cut(s)	305, 652
MalI	GATC	2 cut(s)	77, 666
MboI	GATC	2 cut(s)	75, 664
MboII	GAAGA	7 cut(s)	16, 248, 249, 325, 578, 694, 731
MluCI	AATT	6 cut(s)	67, 174, 181, 290, 581, 668
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	8 cut(s)	109, 261, 309, 334, 562, 606, 706, 709
MseI	TTAA	3 cut(s)	18, 282, 435
MslI	CAYNNNNRTG	1 cut(s)	546
MspI	CCGG	1 cut(s)	586
MspR9I	CCNGG	2 cut(s)	389, 396
MvaI	CCWGG	2 cut(s)	389, 396
MwoI	GCNNNNNNNGC	1 cut(s)	480
NdeII	GATC	2 cut(s)	75, 664
NlaIII	CATG	4 cut(s)	323, 383, 527, 545
NlaIV	GGNNCC	1 cut(s)	393
NspI	RCATGY	2 cut(s)	323, 383
PaeI	GCATGC	1 cut(s)	323
PflMI	CCANNNNNTGG	2 cut(s)	209, 602
PleI	GAGTC	1 cut(s)	54
PmaCI	CACGTG	1 cut(s)	511
PmlI	CACGTG	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	54
Ppu21I	YACGTR	1 cut(s)	511
Psp6I	CCWGG	2 cut(s)	387, 394
PspCI	CACGTG	1 cut(s)	511
PspGI	CCWGG	2 cut(s)	387, 394
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	2 cut(s)	439, 674
PstNI	CAGNNNCTG	1 cut(s)	683
RsaI	GTAC	2 cut(s)	229, 642
RsaNI	GTAC	2 cut(s)	228, 641
RseI	CAYNNNNRTG	1 cut(s)	546
SalI	GTCGAC	1 cut(s)	40
SaqAI	TTAA	3 cut(s)	18, 282, 435
Sau3AI	GATC	2 cut(s)	75, 664
Sau96I	GGNCC	2 cut(s)	439, 674
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	2 cut(s)	389, 396
SetI	ASST	7 cut(s)	253, 279, 307, 312, 397, 411, 513
SexAI	ACCWGGT	1 cut(s)	394
SfaNI	GCATC	1 cut(s)	177
SinI	GGWCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	546
SpeI	ACTAGT	1 cut(s)	356
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	6 cut(s)	67, 174, 181, 290, 581, 668
SspMI	CTAG	2 cut(s)	357, 591
StyD4I	CCNGG	2 cut(s)	387, 394
StyI	CCWWGG	2 cut(s)	268, 596
TaaI	ACNGT	2 cut(s)	338, 628
TaiI	ACGT	2 cut(s)	312, 513
TaqI	TCGA	1 cut(s)	41
TasI	AATT	6 cut(s)	67, 174, 181, 290, 581, 668
Tru1I	TTAA	3 cut(s)	18, 282, 435
Tru9I	TTAA	3 cut(s)	18, 282, 435
TscAI	CASTG	2 cut(s)	42, 341
TspDTI	ATGAA	2 cut(s)	147, 378
TspRI	CASTG	2 cut(s)	42, 341
Van91I	CCANNNNNTGG	2 cut(s)	209, 602
VpaK11BI	GGWCC	1 cut(s)	439
XapI	RAATTY	2 cut(s)	181, 290
XceI	RCATGY	2 cut(s)	323, 383
XmiI	GTMKAC	1 cut(s)	41
XspI	CTAG	2 cut(s)	357, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.