Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Forward (+)

30226635 .. 30227408

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00024300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAGATATTTTTCTAATAAGCAATGCTTTAAGGACCATATCCAGTCCTGCCACGCTCATTTCACTTGCGAGATATGTGGGAAGGAGTGGAAAAAGAACATCAAAAGCCATCTCCGTACTCATGAAGACGGAGGGTCTTCATTGGAAGTTAAATGTGATTATAAGGGTTGTCTTCTCACATTTTCTAAAAAATCAAATCTTCTTCAACATGTGAAGACTGTACACCTCCAACAGAAATCCTTCGCTTGTAGCTTCTCAGGCTGTGGTAAGACATTCTCATACAAGCACGTGAGAGATAAGCATGAGAAGTCTGGATATCATGTATATGCCTATGGGGATTTTGAAGAGGCTGATGAGCAATTCCCGTCTAGGCCAAGGGGTGGGCGTAAGAGGAAGTGTCTGACAGTAGAAATGCTTTTACGAAAAGGGTTACTCCACCAGAACGGCCCAGAGACTGAGTTCCTTTCCCAGTTCTTCTCACAAGAGGAGGAAGACGTAGAGGGAGTCACGCCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

172

Amino Acids

19.93

Weight (kDa)

8.68

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AccB7I	CCANNNNNTGG	1 cut(s)	380
AcvI	CACGTG	1 cut(s)	289
AfaI	GTAC	2 cut(s)	118, 222
AfiI	CCNNNNNNNGG	1 cut(s)	380
AflIII	ACRYGT	1 cut(s)	208
AgsI	TTSAA	2 cut(s)	206, 344
AhdI	GACNNNNNGTC	1 cut(s)	133
AluBI	AGCT	1 cut(s)	252
AluI	AGCT	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	446
AlwNI	CAGNNNCTG	1 cut(s)	455
AoxI	GGCC	2 cut(s)	371, 445
Asp700I	GAANNNNTTC	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	34, 446
AvaII	GGWCC	1 cut(s)	34
BbrPI	CACGTG	1 cut(s)	289
BbsI	GAAGAC	5 cut(s)	129, 132, 164, 221, 498
BccI	CCATC	1 cut(s)	117
BceAI	ACGGC	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	1 cut(s)	369
Bme18I	GGWCC	1 cut(s)	34
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	34, 446
BmrI	ACTGGG	1 cut(s)	463
BmuI	ACTGGG	1 cut(s)	463
BpiI	GAAGAC	5 cut(s)	129, 132, 164, 221, 498
BsaAI	YACGTR	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	43, 469
Bse3DI	GCAATG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	374
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMI	GCAATG	1 cut(s)	29
BseMII	CTCAG	2 cut(s)	270, 447
BseNI	ACTGG	2 cut(s)	43, 469
BseRI	GAGGAG	1 cut(s)	500
BshFI	GGCC	2 cut(s)	373, 447
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	446
BsnI	GGCC	2 cut(s)	373, 447
Bsp1407I	TGTACA	1 cut(s)	220
BspANI	GGCC	2 cut(s)	373, 447
BspCNI	CTCAG	2 cut(s)	269, 448
BspHI	TCATGA	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	43, 469
BssECI	CCNNGG	1 cut(s)	374
BssT1I	CCWWGG	1 cut(s)	374
Bst4CI	ACNGT	2 cut(s)	220, 406
Bst6I	CTCTTC	1 cut(s)	339
BstAUI	TGTACA	1 cut(s)	220
BstBAI	YACGTR	1 cut(s)	289
BstDEI	CTNAG	2 cut(s)	256, 456
BstMAI	GTCTC	1 cut(s)	446
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	212
BstV2I	GAAGAC	5 cut(s)	129, 132, 164, 221, 498
BsuRI	GGCC	2 cut(s)	373, 447
CaiI	CAGNNNCTG	1 cut(s)	455
CciI	TCATGA	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	34, 446
Csp6I	GTAC	2 cut(s)	117, 221
CviAII	CATG	4 cut(s)	122, 209, 302, 320
CviJI	RGCY	6 cut(s)	108, 252, 261, 350, 373, 447
CviKI_1	RGCY	6 cut(s)	108, 252, 261, 350, 373, 447
CviQI	GTAC	2 cut(s)	117, 221
DdeI	CTNAG	2 cut(s)	256, 456
DriI	GACNNNNNGTC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	339
Eam1105I	GACNNNNNGTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	34
Eco72I	CACGTG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	4 cut(s)	125, 212, 305, 323
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	4 cut(s)	121, 208, 301, 319
FspBI	CTAG	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	373, 447
Hin1II	CATG	4 cut(s)	125, 212, 305, 323
HinfI	GANTC	1 cut(s)	504
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	402
Hpy188III	TCNNGA	2 cut(s)	122, 312
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	76, 250
HpyCH4III	ACNGT	2 cut(s)	220, 406
HpyCH4IV	ACGT	2 cut(s)	288, 495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	2 cut(s)	256, 456
HpySE526I	ACGT	2 cut(s)	288, 495
Hsp92II	CATG	4 cut(s)	125, 212, 305, 323
LpnPI	CCDG	7 cut(s)	56, 61, 243, 297, 452, 462, 482
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	2 cut(s)	288, 495
MaeIII	GTNAC	2 cut(s)	429, 505
MboII	GAAGA	9 cut(s)	129, 137, 164, 191, 194, 226, 356, 466, 503
MluCI	AATT	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	513
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	7 cut(s)	125, 236, 340, 384, 478, 481, 493
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	2 cut(s)	30, 150
MslI	CAYNNNNRTG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	258
NlaIII	CATG	4 cut(s)	125, 212, 305, 323
NmuCI	GTSAC	1 cut(s)	505
NspI	RCATGY	1 cut(s)	212
PagI	TCATGA	1 cut(s)	121
PciI	ACATGT	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	239
PflMI	CCANNNNNTGG	1 cut(s)	380
PleI	GAGTC	1 cut(s)	512
PmaCI	CACGTG	1 cut(s)	289
PmlI	CACGTG	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	512
Ppu21I	YACGTR	1 cut(s)	289
PscI	ACATGT	1 cut(s)	208
PsiI	TTATAA	1 cut(s)	162
PspCI	CACGTG	1 cut(s)	289
PspPI	GGNCC	2 cut(s)	34, 446
PstNI	CAGNNNCTG	1 cut(s)	455
RsaI	GTAC	2 cut(s)	118, 222
RsaNI	GTAC	2 cut(s)	117, 221
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	30, 150
Sau96I	GGNCC	2 cut(s)	34, 446
SchI	GAGTC	1 cut(s)	513
SetI	ASST	4 cut(s)	228, 254, 291, 498
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	324
Sse9I	AATT	1 cut(s)	359
SspMI	CTAG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	2 cut(s)	220, 406
TaiI	ACGT	2 cut(s)	291, 498
TasI	AATT	1 cut(s)	359
TatI	WGTACW	1 cut(s)	220
Tru1I	TTAA	2 cut(s)	30, 150
Tru9I	TTAA	2 cut(s)	30, 150
TseFI	GTSAC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	2 cut(s)	129, 138
TspGWI	ACGGA	2 cut(s)	104, 144
Van91I	CCANNNNNTGG	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.