Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Forward (+)

23307265 .. 23312614

Gene Structure 5350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0251800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

ATGGCCGGTGCTAATAGCAACGCCGGCGAGGCAGCAGCCGGCGGTGGGGCCCAGCCGGCTCAGGCTGCTGCTTCGGCGGCGGGGGGAGGTTTGGAATCGGCTCCGGCGCCGACGCCGTTACTGAACTCGAACGCGCCGCCGCCGTTCCTGAGCAAGACGTACGACATGGTGGACGACCCGGCGACCGACCCGATTGTGTCGTGGAGCGCCACCAACAACAGCTTCGTGGTTTGGAACCCGCCGGAGTTCGCCAGGGACCTTCTGCCCAAGTACTTCAAGCACAATAACTTCTCCAGTTTCGTCAGGCAGTTGAACACTTATGGATTTAGGAAAGTTGATCCTGACCGCTGGGAATTTGCAAATGAGGGCTTTTTGAGGGGTCAAAAACATCTTCTAAAGAGTATCAACCGGCGAAAACCTGCCCATGGACATGGTCATCAACAGCCACAGCAGCCATCACATGGACAGAGTTCAGTAGCTGCATGTGTAGAGGTTGGGAAGTTTGGTCTCGAGGAAGAGGTTGAGAGGCTTAAAAGGGACAAGAATGTGCTTATGCAGGAACTTATCAGGTTGAGGCAGCAGCAACAGTCTACTGATAATCAGCTGCAAACAATGGTCCAACGTCTTCAAGGTATGGAGCAGCGGCAGCAACAGATGATGTCATTCCTTGCAAAGGCTGTTCAGAGCCCTGGTTTCTTGAATCAGTTTGTACAGCAGCAAAATGATAGCAATAGGCGCATAACTGAAGCCAATAAGAAAAGGAGACTCAGGGAGGAAGGAATTGCTGAAAACGAGCGTTCTGATACTCCTGATGGACAGATTGTTAAGTATCAGCCTCCGATGAATGAAGCGGCAAAGGCAATGCTCAGGCAGATGATGAAAACAAATACTTCTTCCCAGCTGGATTCTTTTAGCAACAATCTTGAGAATTTTTTGATTGGTGAGGGTTCATCATCATCCAGTGCAGTAGACAGTGGTAGCTCTTCAAGCCATGTCTCGGGAGCTACACTTCAAGAGGTCCCGCTTACTTCAGGGCGTGGACCGTTACCTGCAATTTCAGAAATAGAATCTTCTCTTAAGGCTACAACCTCTGGAGAAGTTATGAGAGATCCATTGTCAGATATTAATGTCCTCATTGGAGCGCAAGAGGCACCAGCACTTCCTATTTCTCAGGCAGATGTAATCCCTGAGGTTTCTCAGGTACAAGGTATGGCACATGGAGGTTTAATTGATATTCCTGAAGGAAACACAAAACCTGAGGCAGATGTTGGATTTATTCAAGATATGGCACCTGAAGCCGGTGATGGATTTATCGACTCCACGGCATTTGATTTTATGTCCCTAGATGTTGATAGTTTTCCCCCTGATGCTGACATTGACGCATTGCTTGACAATTCCAACTTGTGGGATTTTCTTGAACAAAGTCCTGTGGCAGATGAAATGGATTCGACCTCTGCAGAAGGCATGCCTGTGGGAAATGAAGTGCAGCCGACAGAGAATGGGTGGGATAAAACCCAGCATATGGATAAGCTTACTGAGCAAATGGGAAATCTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

519

Amino Acids

56.45

Weight (kDa)

4.75

Isoelectric Point (pI)

53.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	49 - 138	2.6e-30	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	427, 1057
AccB1I	GGYRCC	3 cut(s)	106, 1150, 1288
AccB7I	CCANNNNNTGG	3 cut(s)	461, 1404, 1522
AccI	GTMKAC	2 cut(s)	590, 969
AccII	CGCG	1 cut(s)	134
AclWI	GGATC	2 cut(s)	332, 1103
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	353, 928
AcuI	CTGAAG	4 cut(s)	765, 1014, 1260, 1314
AcyI	GRCGYC	2 cut(s)	107, 113
AfaI	GTAC	4 cut(s)	161, 272, 711, 1203
AfiI	CCNNNNNNNGG	8 cut(s)	45, 425, 461, 673, 997, 1298, 1404, 1522
AflII	CTTAAG	1 cut(s)	1076
AgsI	TTSAA	8 cut(s)	277, 313, 629, 700, 987, 1013, 1280, 1418
AjnI	CCWGG	2 cut(s)	251, 688
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	7 cut(s)	222, 479, 604, 901, 981, 1004, 1531
AluI	AGCT	7 cut(s)	222, 479, 604, 901, 981, 1004, 1531
Alw26I	GTCTC	3 cut(s)	512, 757, 1000
AlwI	GGATC	2 cut(s)	332, 1103
AlwNI	CAGNNNCTG	1 cut(s)	479
Ama87I	CYCGRG	2 cut(s)	509, 997
AoxI	GGCC	2 cut(s)	3, 48
ApaI	GGGCCC	1 cut(s)	52
ApoI	RAATTY	2 cut(s)	353, 928
AseI	ATTAAT	1 cut(s)	1125
AspLEI	GCGC	5 cut(s)	109, 136, 209, 738, 1144
AspS9I	GGNCC	6 cut(s)	48, 49, 256, 616, 1018, 1040
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	953, 1313
AvaI	CYCGRG	2 cut(s)	509, 997
AvaII	GGWCC	4 cut(s)	256, 616, 1018, 1040
AxyI	CCTNAGG	2 cut(s)	1188, 1257
BaeGI	GKGCMC	1 cut(s)	52
BanI	GGYRCC	3 cut(s)	106, 1150, 1288
BanII	GRGCYC	2 cut(s)	52, 689
BbsI	GAAGAC	1 cut(s)	617
BccI	CCATC	3 cut(s)	463, 806, 1298
BceAI	ACGGC	3 cut(s)	100, 127, 1338
BciT130I	CCWGG	2 cut(s)	253, 690
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	3 cut(s)	512, 757, 1000
BfaI	CTAG	1 cut(s)	1343
BfmI	CTRYAG	1 cut(s)	1455
BfoI	RGCGCY	2 cut(s)	110, 210
BfrI	CTTAAG	1 cut(s)	1076
BfuAI	ACCTGC	2 cut(s)	427, 1057
BglI	GCCNNNNNGGC	2 cut(s)	29, 56
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	3 cut(s)	179, 253, 690
Bme18I	GGWCC	4 cut(s)	256, 616, 1018, 1040
BmeT110I	CYCGRG	2 cut(s)	509, 997
BmgT120I	GGNCC	6 cut(s)	48, 49, 256, 616, 1018, 1040
BmiI	GGNNCC	9 cut(s)	49, 50, 102, 108, 236, 257, 1020, 1152, 1290
BmrFI	CCNGG	3 cut(s)	179, 253, 690
BmsI	GCATC	1 cut(s)	1357
BpiI	GAAGAC	1 cut(s)	617
BpmI	CTGGAG	2 cut(s)	277, 1113
Bpu10I	CCTNAGC	3 cut(s)	60, 149, 866
BpuEI	CTTGAG	1 cut(s)	944
BpuMI	CCSGG	1 cut(s)	179
BsaHI	GRCGYC	2 cut(s)	107, 113
BsaI	GGTCTC	1 cut(s)	512
BsaJI	CCNNGG	4 cut(s)	252, 424, 688, 1320
Bsc4I	CCNNNNNNNGG	8 cut(s)	45, 425, 461, 673, 997, 1298, 1404, 1522
Bse118I	RCCGGY	6 cut(s)	5, 23, 38, 55, 408, 1298
Bse1I	ACTGG	2 cut(s)	294, 960
Bse21I	CCTNAGG	2 cut(s)	1188, 1257
Bse3DI	GCAATG	2 cut(s)	867, 1382
BseBI	CCWGG	2 cut(s)	253, 690
BseDI	CCNNGG	4 cut(s)	252, 424, 688, 1320
BseGI	GGATG	1 cut(s)	956
BseLI	CCNNNNNNNGG	8 cut(s)	45, 425, 461, 673, 997, 1298, 1404, 1522
BseMI	GCAATG	2 cut(s)	867, 1382
BseMII	CTCAG	9 cut(s)	74, 140, 781, 880, 1179, 1184, 1211, 1248, 1527
BseNI	ACTGG	2 cut(s)	294, 960
BseSI	GKGCMC	1 cut(s)	52
BseYI	CCCAGC	4 cut(s)	51, 348, 897, 1515
BsgI	GTGCAG	2 cut(s)	984, 1505
Bsh1236I	CGCG	1 cut(s)	134
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	5, 50
BshNI	GGYRCC	3 cut(s)	106, 1150, 1288
BsiEI	CGRYCG	1 cut(s)	186
BsiHKCI	CYCGRG	2 cut(s)	509, 997
BsiSI	CCGG	9 cut(s)	6, 24, 39, 56, 104, 179, 242, 409, 1299
BsiWI	CGTACG	1 cut(s)	159
BslFI	GGGAC	4 cut(s)	269, 551, 1004, 1324
BslI	CCNNNNNNNGG	8 cut(s)	45, 425, 461, 673, 997, 1298, 1404, 1522
BsmAI	GTCTC	3 cut(s)	512, 757, 1000
BsmFI	GGGAC	4 cut(s)	269, 551, 1004, 1324
BsnI	GGCC	2 cut(s)	5, 50
Bso31I	GGTCTC	1 cut(s)	512
BsoBI	CYCGRG	2 cut(s)	509, 997
Bsp120I	GGGCCC	1 cut(s)	48
Bsp1286I	GDGCHC	2 cut(s)	52, 689
Bsp1407I	TGTACA	1 cut(s)	709
Bsp143I	GATC	2 cut(s)	337, 1108
Bsp19I	CCATGG	1 cut(s)	424
BspANI	GGCC	2 cut(s)	5, 50
BspCNI	CTCAG	9 cut(s)	73, 141, 780, 879, 1180, 1183, 1210, 1249, 1528
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	9 cut(s)	49, 50, 102, 108, 236, 257, 1020, 1152, 1290
BspMAI	CTGCAG	1 cut(s)	1459
BspMI	ACCTGC	2 cut(s)	427, 1057
BspPI	GGATC	2 cut(s)	332, 1103
BspQI	GCTCTTC	1 cut(s)	988
BspT107I	GGYRCC	3 cut(s)	106, 1150, 1288
BspTI	CTTAAG	1 cut(s)	1076
BspTNI	GGTCTC	1 cut(s)	512
BsrDI	GCAATG	2 cut(s)	867, 1382
BsrFI	RCCGGY	6 cut(s)	5, 23, 38, 55, 408, 1298
BsrGI	TGTACA	1 cut(s)	709
BsrI	ACTGG	2 cut(s)	294, 960
BssAI	RCCGGY	6 cut(s)	5, 23, 38, 55, 408, 1298
BssECI	CCNNGG	4 cut(s)	252, 424, 688, 1320
BssMI	GATC	2 cut(s)	337, 1108
BssNI	GRCGYC	2 cut(s)	107, 113
BssT1I	CCWWGG	1 cut(s)	424
Bst2UI	CCWGG	2 cut(s)	253, 690
Bst4CI	ACNGT	3 cut(s)	588, 974, 1044
Bst6I	CTCTTC	2 cut(s)	510, 988
BstACI	GRCGYC	2 cut(s)	107, 113
BstAFI	CTTAAG	1 cut(s)	1076
BstAUI	TGTACA	1 cut(s)	709
BstC8I	GCNNGC	4 cut(s)	25, 40, 57, 1466
BstDEI	CTNAG	9 cut(s)	60, 149, 767, 866, 1170, 1188, 1197, 1257, 1536
BstDSI	CCRYGG	2 cut(s)	424, 1320
BstENI	CCTNNNNNAGG	1 cut(s)	671
BstF5I	GGATG	1 cut(s)	956
BstFNI	CGCG	1 cut(s)	134
BstH2I	RGCGCY	2 cut(s)	110, 210
BstHHI	GCGC	5 cut(s)	109, 136, 209, 738, 1144
BstKTI	GATC	2 cut(s)	340, 1111
BstMAI	GTCTC	3 cut(s)	512, 757, 1000
BstMBI	GATC	2 cut(s)	337, 1108
BstMCI	CGRYCG	1 cut(s)	186
BstNI	CCWGG	2 cut(s)	253, 690
BstNSI	RCATGY	2 cut(s)	486, 1468
BstSCI	CCNGG	3 cut(s)	177, 251, 688
BstSFI	CTRYAG	1 cut(s)	1455
BstSLI	GKGCMC	1 cut(s)	52
BstUI	CGCG	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	617
BstX2I	RGATCY	1 cut(s)	1108
BstXI	CCANNNNNNTGG	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	1108
Bsu36I	CCTNAGG	2 cut(s)	1188, 1257
BsuRI	GGCC	2 cut(s)	5, 50
BtgI	CCRYGG	2 cut(s)	424, 1320
BtsCI	GGATG	1 cut(s)	956
BtsIMutI	CAGTG	2 cut(s)	967, 979
BveI	ACCTGC	2 cut(s)	427, 1057
Cac8I	GCNNGC	4 cut(s)	25, 40, 57, 1466
CaiI	CAGNNNCTG	1 cut(s)	479
CfoI	GCGC	5 cut(s)	109, 136, 209, 738, 1144
Cfr10I	RCCGGY	6 cut(s)	5, 23, 38, 55, 408, 1298
Cfr13I	GGNCC	6 cut(s)	48, 49, 256, 616, 1018, 1040
CseI	GACGC	2 cut(s)	121, 1388
Csp6I	GTAC	4 cut(s)	160, 271, 710, 1202
CspCI	CAANNNNNGTGG	2 cut(s)	1309, 1344
CviAII	CATG	8 cut(s)	166, 425, 431, 461, 483, 992, 1217, 1465
CviQI	GTAC	4 cut(s)	160, 271, 710, 1202
DdeI	CTNAG	9 cut(s)	60, 149, 767, 866, 1170, 1188, 1197, 1257, 1536
DinI	GGCGCC	1 cut(s)	108
DpnI	GATC	2 cut(s)	339, 1110
DpnII	GATC	2 cut(s)	337, 1108
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	510, 988
EarI	CTCTTC	2 cut(s)	510, 988
Eco130I	CCWWGG	1 cut(s)	424
Eco24I	GRGCYC	2 cut(s)	52, 689
Eco31I	GGTCTC	1 cut(s)	512
Eco47I	GGWCC	4 cut(s)	256, 616, 1018, 1040
Eco57I	CTGAAG	4 cut(s)	765, 1014, 1260, 1314
Eco81I	CCTNAGG	2 cut(s)	1188, 1257
Eco88I	CYCGRG	2 cut(s)	509, 997
EcoNI	CCTNNNNNAGG	1 cut(s)	671
EcoO109I	RGGNCCY	3 cut(s)	48, 256, 1018
EcoRII	CCWGG	2 cut(s)	251, 688
EcoT14I	CCWWGG	1 cut(s)	424
EcoT38I	GRGCYC	2 cut(s)	52, 689
EgeI	GGCGCC	1 cut(s)	108
EheI	GGCGCC	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	8 cut(s)	169, 428, 434, 464, 486, 995, 1220, 1468
FaqI	GGGAC	4 cut(s)	269, 551, 1004, 1324
FatI	CATG	8 cut(s)	165, 424, 430, 460, 482, 991, 1216, 1464
FauI	CCCGC	3 cut(s)	73, 246, 1029
FauNDI	CATATG	1 cut(s)	1521
FblI	GTMKAC	2 cut(s)	590, 969
FokI	GGATG	1 cut(s)	943
FriOI	GRGCYC	2 cut(s)	52, 689
FspBI	CTAG	1 cut(s)	1343
GlaI	GCGC	5 cut(s)	108, 135, 208, 737, 1143
GsaI	CCCAGC	4 cut(s)	55, 352, 901, 1519
GsuI	CTGGAG	2 cut(s)	277, 1113
HaeII	RGCGCY	2 cut(s)	110, 210
HaeIII	GGCC	2 cut(s)	5, 50
HapII	CCGG	9 cut(s)	6, 24, 39, 56, 104, 179, 242, 409, 1299
HgaI	GACGC	2 cut(s)	121, 1388
HhaI	GCGC	5 cut(s)	109, 136, 209, 738, 1144
Hin1I	GRCGYC	2 cut(s)	107, 113
Hin1II	CATG	8 cut(s)	169, 428, 434, 464, 486, 995, 1220, 1468
Hin6I	GCGC	5 cut(s)	107, 134, 207, 736, 1142
HinP1I	GCGC	5 cut(s)	107, 134, 207, 736, 1142
HindIII	AAGCTT	1 cut(s)	1529
HinfI	GANTC	7 cut(s)	95, 700, 765, 905, 1067, 1316, 1445
HpaII	CCGG	9 cut(s)	6, 24, 39, 56, 104, 179, 242, 409, 1299
HphI	GGTGA	2 cut(s)	953, 1313
Hpy166II	GTNNAC	4 cut(s)	172, 591, 970, 1040
Hpy188I	TCNGA	5 cut(s)	684, 802, 840, 1060, 1120
Hpy8I	GTNNAC	4 cut(s)	172, 591, 970, 1040
Hpy99I	CGWCG	1 cut(s)	115
HpyAV	CCTTC	4 cut(s)	269, 770, 1235, 1454
HpyCH4III	ACNGT	3 cut(s)	588, 974, 1044
HpyCH4IV	ACGT	2 cut(s)	158, 622
HpyCH4V	TGCA	9 cut(s)	359, 482, 556, 607, 671, 965, 1052, 1457, 1486
HpyF3I	CTNAG	9 cut(s)	60, 149, 767, 866, 1170, 1188, 1197, 1257, 1536
HpySE526I	ACGT	2 cut(s)	158, 622
Hsp92I	GRCGYC	2 cut(s)	107, 113
Hsp92II	CATG	8 cut(s)	169, 428, 434, 464, 486, 995, 1220, 1468
HspAI	GCGC	5 cut(s)	107, 134, 207, 736, 1142
KasI	GGCGCC	1 cut(s)	106
KroI	GCCGGC	3 cut(s)	23, 38, 55
KroNI	GCCGGC	3 cut(s)	25, 40, 57
Kzo9I	GATC	2 cut(s)	337, 1108
LguI	GCTCTTC	1 cut(s)	988
LmnI	GCTCC	5 cut(s)	106, 204, 637, 1001, 1139
LweI	GCATC	1 cut(s)	1357
MaeI	CTAG	1 cut(s)	1343
MaeII	ACGT	2 cut(s)	158, 622
MaeIII	GTNAC	2 cut(s)	117, 1044
MalI	GATC	2 cut(s)	339, 1110
MboI	GATC	2 cut(s)	337, 1108
MboII	GAAGA	6 cut(s)	383, 527, 617, 885, 975, 1062
MflI	RGATCY	1 cut(s)	1108
MhlI	GDGCHC	2 cut(s)	52, 689
MluCI	AATT	6 cut(s)	353, 780, 928, 1053, 1227, 1393
Mly113I	GGCGCC	1 cut(s)	107
MlyI	GAGTC	2 cut(s)	759, 1310
MmeI	TCCRAC	3 cut(s)	643, 1249, 1422
MreI	CGCCGGCG	1 cut(s)	23
MroNI	GCCGGC	3 cut(s)	23, 38, 55
MseI	TTAA	6 cut(s)	531, 825, 1077, 1125, 1226, 1554
MslI	CAYNNNNRTG	2 cut(s)	429, 1469
MspA1I	CMGCKG	4 cut(s)	348, 604, 643, 901
MspCI	CTTAAG	1 cut(s)	1076
MspI	CCGG	9 cut(s)	6, 24, 39, 56, 104, 179, 242, 409, 1299
MspR9I	CCNGG	3 cut(s)	179, 253, 690
MvaI	CCWGG	2 cut(s)	253, 690
MvnI	CGCG	1 cut(s)	134
NaeI	GCCGGC	3 cut(s)	25, 40, 57
NarI	GGCGCC	1 cut(s)	107
NciI	CCSGG	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	424
NdeI	CATATG	1 cut(s)	1521
NdeII	GATC	2 cut(s)	337, 1108
NgoMIV	GCCGGC	3 cut(s)	23, 38, 55
NlaIII	CATG	8 cut(s)	169, 428, 434, 464, 486, 995, 1220, 1468
NlaIV	GGNNCC	9 cut(s)	49, 50, 102, 108, 236, 257, 1020, 1152, 1290
NspI	RCATGY	2 cut(s)	486, 1468
PaeI	GCATGC	1 cut(s)	1468
PaeR7I	CTCGAG	1 cut(s)	509
PciSI	GCTCTTC	1 cut(s)	988
PdiI	GCCGGC	3 cut(s)	25, 40, 57
PfeI	GAWTC	5 cut(s)	95, 700, 905, 1067, 1445
Pfl23II	CGTACG	1 cut(s)	159
PflFI	GACNNNGTC	1 cut(s)	432
PflMI	CCANNNNNTGG	3 cut(s)	461, 1404, 1522
PleI	GAGTC	2 cut(s)	759, 1310
PluTI	GGCGCC	1 cut(s)	110
PpsI	GAGTC	2 cut(s)	759, 1310
PpuMI	RGGWCCY	2 cut(s)	256, 1018
PshBI	ATTAAT	1 cut(s)	1125
Psp5II	RGGWCCY	2 cut(s)	256, 1018
Psp6I	CCWGG	2 cut(s)	251, 688
PspFI	CCCAGC	4 cut(s)	51, 348, 897, 1515
PspGI	CCWGG	2 cut(s)	251, 688
PspLI	CGTACG	1 cut(s)	159
PspN4I	GGNNCC	9 cut(s)	49, 50, 102, 108, 236, 257, 1020, 1152, 1290
PspOMI	GGGCCC	1 cut(s)	48
PspPI	GGNCC	6 cut(s)	48, 49, 256, 616, 1018, 1040
PspPPI	RGGWCCY	2 cut(s)	256, 1018
PstI	CTGCAG	1 cut(s)	1459
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	1108
PsyI	GACNNNGTC	1 cut(s)	432
PvuII	CAGCTG	2 cut(s)	604, 901
RsaI	GTAC	4 cut(s)	161, 272, 711, 1203
RsaNI	GTAC	4 cut(s)	160, 271, 710, 1202
RseI	CAYNNNNRTG	2 cut(s)	429, 1469
SapI	GCTCTTC	1 cut(s)	988
SaqAI	TTAA	6 cut(s)	531, 825, 1077, 1125, 1226, 1554
Sau3AI	GATC	2 cut(s)	337, 1108
Sau96I	GGNCC	6 cut(s)	48, 49, 256, 616, 1018, 1040
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	2 cut(s)	759, 1310
ScrFI	CCNGG	3 cut(s)	179, 253, 690
SduI	GDGCHC	2 cut(s)	52, 689
SfaNI	GCATC	1 cut(s)	1357
SfcI	CTRYAG	1 cut(s)	1455
SfoI	GGCGCC	1 cut(s)	108
Sfr274I	CTCGAG	1 cut(s)	509
SgrAI	CRCCGGYG	1 cut(s)	23
SinI	GGWCC	4 cut(s)	256, 616, 1018, 1040
SlaI	CTCGAG	1 cut(s)	509
SmiMI	CAYNNNNRTG	2 cut(s)	429, 1469
SmlI	CTYRAG	3 cut(s)	509, 923, 1076
SmoI	CTYRAG	3 cut(s)	509, 923, 1076
SphI	GCATGC	1 cut(s)	1468
Sse9I	AATT	6 cut(s)	353, 780, 928, 1053, 1227, 1393
SspDI	GGCGCC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	1343
StyD4I	CCNGG	3 cut(s)	177, 251, 688
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	3 cut(s)	588, 974, 1044
TaiI	ACGT	2 cut(s)	161, 625
TaqI	TCGA	4 cut(s)	128, 510, 1314, 1448
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	6 cut(s)	353, 780, 928, 1053, 1227, 1393
TatI	WGTACW	2 cut(s)	270, 709
TauI	GCSGC	5 cut(s)	80, 139, 142, 646, 854
TfiI	GAWTC	5 cut(s)	95, 700, 905, 1067, 1445
Tru1I	TTAA	6 cut(s)	531, 825, 1077, 1125, 1226, 1554
Tru9I	TTAA	6 cut(s)	531, 825, 1077, 1125, 1226, 1554
TscAI	CASTG	2 cut(s)	967, 979
TspDTI	ATGAA	6 cut(s)	857, 861, 893, 939, 1452, 1494
TspRI	CASTG	2 cut(s)	967, 979
Tth111I	GACNNNGTC	1 cut(s)	432
Van91I	CCANNNNNTGG	3 cut(s)	461, 1404, 1522
Vha464I	CTTAAG	1 cut(s)	1076
VpaK11BI	GGWCC	4 cut(s)	256, 616, 1018, 1040
VspI	ATTAAT	1 cut(s)	1125
XagI	CCTNNNNNAGG	1 cut(s)	671
XapI	RAATTY	2 cut(s)	353, 928
XceI	RCATGY	2 cut(s)	486, 1468
XhoI	CTCGAG	1 cut(s)	509
XmiI	GTMKAC	2 cut(s)	590, 969
XspI	CTAG	1 cut(s)	1343
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.