Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Reverse (-)

4377375 .. 4378620

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46583

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGATGAGAGGCCGATTTTCAGAGACATAAGGCGGTATTACTGCAAATACTGTGGAATCTGTAGATCTAAGAAGACTCTGATTGCTTCTCACATCCAGGCTCAGCACAAGGATGAGATGGAAATGGCGAAGGGTCATGAGGAAGTTGTGGTGGAGAAGTCTAATACATGTGAAGAATGTGGTGCTAGTTTCAAGAAACCTGCACATCTGAAGCAGCATATGCAAAGCCATTCCCTTGAGGAATCAACATGTTTAAGAACTAAACCATTTGGATCGCGTGAAGCATTGGATCCCACCAAAGAACTCCAAAATGCGAGAGGGTATGGACTTGAGTGGACCAGTACCAGGGGGGAGACCTCCTGTGAAGCTCCATCAAGTGATCCTCAATCACGCAGTGGTACTTTTGAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

137

Amino Acids

15.62

Weight (kDa)

6.99

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
AccII	CGCG	1 cut(s)	277
AciI	CCGC	1 cut(s)	34
AclWI	GGATC	4 cut(s)	280, 284, 297, 374
AcuI	CTGAAG	1 cut(s)	230
AdeI	CACNNNGTG	1 cut(s)	395
AfaI	GTAC	2 cut(s)	343, 400
AfiI	CCNNNNNNNGG	1 cut(s)	345
AflIII	ACRYGT	2 cut(s)	167, 248
AgsI	TTSAA	1 cut(s)	193
AjnI	CCWGG	2 cut(s)	96, 344
AluBI	AGCT	1 cut(s)	368
AluI	AGCT	1 cut(s)	368
Alw26I	GTCTC	2 cut(s)	18, 347
AlwI	GGATC	4 cut(s)	280, 284, 297, 374
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	336
BamHI	GGATCC	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	2 cut(s)	112, 379
BciT130I	CCWGG	2 cut(s)	98, 346
BcoDI	GTCTC	2 cut(s)	18, 347
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	208
BglII	AGATCT	1 cut(s)	65
BisI	GCNGC	1 cut(s)	215
BlpI	GCTNAGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	216
Bme1390I	CCNGG	2 cut(s)	98, 346
Bme18I	GGWCC	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	2 cut(s)	98, 346
BpiI	GAAGAC	1 cut(s)	80
Bpu1102I	GCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	2 cut(s)	257, 350
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	339
BseBI	CCWGG	2 cut(s)	98, 346
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	3 cut(s)	10, 93, 118
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	13
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	2 cut(s)	18, 347
BsnI	GGCC	1 cut(s)	13
Bso31I	GGTCTC	1 cut(s)	347
Bsp143I	GATC	4 cut(s)	65, 272, 289, 379
Bsp1720I	GCTNAGC	1 cut(s)	102
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	115
BspFNI	CGCG	1 cut(s)	277
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	291
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	4 cut(s)	280, 284, 297, 374
BspTNI	GGTCTC	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	4 cut(s)	65, 272, 289, 379
Bst2UI	CCWGG	2 cut(s)	98, 346
Bst4CI	ACNGT	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	69, 102
BstF5I	GGATG	3 cut(s)	10, 93, 118
BstFNI	CGCG	1 cut(s)	277
BstKTI	GATC	4 cut(s)	68, 275, 292, 382
BstMAI	GTCTC	2 cut(s)	18, 347
BstMBI	GATC	4 cut(s)	65, 272, 289, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstNI	CCWGG	2 cut(s)	98, 346
BstNSI	RCATGY	2 cut(s)	171, 252
BstSCI	CCNGG	2 cut(s)	96, 344
BstSFI	CTRYAG	1 cut(s)	61
BstUI	CGCG	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	2 cut(s)	65, 289
BstYI	RGATCY	2 cut(s)	65, 289
BsuRI	GGCC	1 cut(s)	13
BtsCI	GGATG	3 cut(s)	10, 93, 118
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	400
BveI	ACCTGC	1 cut(s)	208
CciI	TCATGA	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	336
Csp6I	GTAC	2 cut(s)	342, 399
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviAII	CATG	3 cut(s)	137, 168, 249
CviJI	RGCY	4 cut(s)	13, 101, 228, 368
CviKI_1	RGCY	4 cut(s)	13, 101, 228, 368
CviQI	GTAC	2 cut(s)	342, 399
DdeI	CTNAG	2 cut(s)	69, 102
DpnI	GATC	4 cut(s)	67, 274, 291, 381
DpnII	GATC	4 cut(s)	65, 272, 289, 379
DraIII	CACNNNGTG	1 cut(s)	395
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	96, 344
FaeI	CATG	3 cut(s)	140, 171, 252
FaiI	YATR	7 cut(s)	29, 138, 169, 219, 221, 250, 324
FatI	CATG	3 cut(s)	136, 167, 248
FauNDI	CATATG	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	215
FokI	GGATG	3 cut(s)	17, 80, 125
Fsp4HI	GCNGC	1 cut(s)	215
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	13
Hin1II	CATG	3 cut(s)	140, 171, 252
HinfI	GANTC	3 cut(s)	57, 76, 242
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	3 cut(s)	23, 81, 210
Hpy188III	TCNNGA	2 cut(s)	137, 193
Hpy8I	GTNNAC	1 cut(s)	336
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	3 cut(s)	45, 203, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	2 cut(s)	69, 102
Hsp92II	CATG	3 cut(s)	140, 171, 252
Kzo9I	GATC	4 cut(s)	65, 272, 289, 379
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	7 cut(s)	83, 110, 213, 331, 352, 358, 373
Lsp1109I	GCAGC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	186
MalI	GATC	4 cut(s)	67, 274, 291, 381
MboI	GATC	4 cut(s)	65, 272, 289, 379
MboII	GAAGA	2 cut(s)	85, 185
MflI	RGATCY	2 cut(s)	65, 289
MlyI	GAGTC	1 cut(s)	70
MnlI	CCTC	7 cut(s)	3, 133, 232, 311, 367, 393, 400
MseI	TTAA	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	98, 346
MvaI	CCWGG	2 cut(s)	98, 346
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	1 cut(s)	220
NdeI	CATATG	1 cut(s)	219
NdeII	GATC	4 cut(s)	65, 272, 289, 379
NlaIII	CATG	3 cut(s)	140, 171, 252
NlaIV	GGNNCC	1 cut(s)	291
NspI	RCATGY	2 cut(s)	171, 252
PagI	TCATGA	1 cut(s)	136
PciI	ACATGT	2 cut(s)	167, 248
PfeI	GAWTC	2 cut(s)	57, 242
PkrI	GCNGC	1 cut(s)	216
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PscI	ACATGT	2 cut(s)	167, 248
Psp6I	CCWGG	2 cut(s)	96, 344
PspGI	CCWGG	2 cut(s)	96, 344
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	336
PsuI	RGATCY	2 cut(s)	65, 289
RsaI	GTAC	2 cut(s)	343, 400
RsaNI	GTAC	2 cut(s)	342, 399
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	1 cut(s)	215
Sau3AI	GATC	4 cut(s)	65, 272, 289, 379
Sau96I	GGNCC	1 cut(s)	336
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	98, 346
SetI	ASST	4 cut(s)	202, 359, 370, 411
SfcI	CTRYAG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	111
SmlI	CTYRAG	2 cut(s)	236, 329
SmoI	CTYRAG	2 cut(s)	236, 329
SsiI	CCGC	1 cut(s)	34
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	2 cut(s)	96, 344
TaaI	ACNGT	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	57, 242
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	1 cut(s)	400
TseI	GCWGC	1 cut(s)	214
TspRI	CASTG	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	336
XceI	RCATGY	2 cut(s)	171, 252
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.