Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8474195.1

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Forward (+)

558 .. 2061

Gene Structure 1504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8474195.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atggatgagaggccgattttcagagacataaggcggtattactgcgagtactgtggaatctgtagatctaagaagactctgattgcttctcacatccaggctcagcacaaggatgagatggaaatggcgaagggtcatgaggaagttgtggtggagaagtctaatacatgtgaagaatgtggtgctagtttcaagaaacctgcacatctgaagcagcatatgcaaagccattcccttgaggaatcaacatgtttaagaactaaaccatttggatcgcgtgaagcattggatcccaccaaagaactccaaaatgcgagagggtatggacttgagtggaccagtaccaggggggagacctcctgtgaagctccatcaagtgatcctcaatcacgcagtggtacttttgagaggccatatgtttgcacaatcgatgattgtcgttctacttatagaagaaaggaccatttgaaccgtcatcttcttcagcaccaagggaagctctttaagtgtccaattgagaactgtaagagtgaatttgcttttcaaggtaacgtgaagaggcatgttgtggaatttcacagtgaggattgcccttctactagcgttgaaagtcagaagcagcatgtgtgccaggaacctggttgtggaaaggtgttcaaatttgcttcgaagctgcggaagcacgaggattctcatggtaggttttatttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

237

Amino Acids

27.43

Weight (kDa)

8.34

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
AccII	CGCG	1 cut(s)	277
AciI	CCGC	2 cut(s)	34, 676
AclWI	GGATC	4 cut(s)	280, 284, 297, 374
AcsI	RAATTY	3 cut(s)	533, 572, 659
AcuI	CTGAAG	2 cut(s)	230, 467
AdeI	CACNNNGTG	1 cut(s)	395
AfaI	GTAC	3 cut(s)	50, 343, 400
AfiI	CCNNNNNNNGG	2 cut(s)	345, 644
AflIII	ACRYGT	2 cut(s)	167, 248
AgsI	TTSAA	5 cut(s)	193, 469, 545, 608, 658
AjnI	CCWGG	4 cut(s)	96, 344, 630, 637
AluBI	AGCT	3 cut(s)	368, 499, 673
AluI	AGCT	3 cut(s)	368, 499, 673
Alw26I	GTCTC	2 cut(s)	18, 347
AlwI	GGATC	4 cut(s)	280, 284, 297, 374
AoxI	GGCC	2 cut(s)	11, 410
ApeKI	GCWGC	3 cut(s)	214, 619, 673
ApoI	RAATTY	3 cut(s)	533, 572, 659
AspS9I	GGNCC	2 cut(s)	336, 460
AsuII	TTCGAA	1 cut(s)	668
AvaII	GGWCC	2 cut(s)	336, 460
BamHI	GGATCC	1 cut(s)	289
BauI	CACGAG	1 cut(s)	683
BbsI	GAAGAC	1 cut(s)	80
BbvI	GCAGC	3 cut(s)	226, 631, 660
BccI	CCATC	2 cut(s)	112, 379
BciT130I	CCWGG	4 cut(s)	98, 346, 632, 639
BcoDI	GTCTC	2 cut(s)	18, 347
BfaI	CTAG	2 cut(s)	186, 600
BfmI	CTRYAG	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	208
BglII	AGATCT	1 cut(s)	65
BisI	GCNGC	3 cut(s)	215, 620, 674
BlpI	GCTNAGC	1 cut(s)	102
BlsI	GCNGC	3 cut(s)	216, 621, 675
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	4 cut(s)	98, 346, 632, 639
Bme18I	GGWCC	2 cut(s)	336, 460
BmgT120I	GGNCC	2 cut(s)	336, 460
BmiI	GGNNCC	2 cut(s)	291, 636
BmrFI	CCNGG	4 cut(s)	98, 346, 632, 639
BpiI	GAAGAC	1 cut(s)	80
Bpu1102I	GCTNAGC	1 cut(s)	102
Bpu14I	TTCGAA	1 cut(s)	668
BpuEI	CTTGAG	2 cut(s)	257, 350
Bsa29I	ATCGAT	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	345, 490
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 644
Bse1I	ACTGG	1 cut(s)	339
BseBI	CCWGG	4 cut(s)	98, 346, 632, 639
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	345, 490
BseGI	GGATG	3 cut(s)	10, 93, 118
BseLI	CCNNNNNNNGG	2 cut(s)	345, 644
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	339
BseXI	GCAGC	3 cut(s)	226, 631, 660
BsgI	GTGCAG	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	13, 412
BshVI	ATCGAT	1 cut(s)	429
BslI	CCNNNNNNNGG	2 cut(s)	345, 644
BsmAI	GTCTC	2 cut(s)	18, 347
BsnI	GGCC	2 cut(s)	13, 412
Bso31I	GGTCTC	1 cut(s)	347
Bsp119I	TTCGAA	1 cut(s)	668
Bsp143I	GATC	4 cut(s)	65, 272, 289, 379
Bsp1720I	GCTNAGC	1 cut(s)	102
BspACI	CCGC	2 cut(s)	34, 676
BspANI	GGCC	2 cut(s)	13, 412
BspCNI	CTCAG	1 cut(s)	115
BspDI	ATCGAT	1 cut(s)	429
BspFNI	CGCG	1 cut(s)	277
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	291, 636
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	4 cut(s)	280, 284, 297, 374
BspT104I	TTCGAA	1 cut(s)	668
BspTNI	GGTCTC	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	2 cut(s)	345, 490
BssMI	GATC	4 cut(s)	65, 272, 289, 379
BssSI	CACGAG	1 cut(s)	683
BssT1I	CCWWGG	1 cut(s)	490
Bst2BI	CACGAG	1 cut(s)	683
Bst2UI	CCWGG	4 cut(s)	98, 346, 632, 639
Bst4CI	ACNGT	4 cut(s)	53, 473, 524, 581
Bst6I	CTCTTC	1 cut(s)	551
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstBI	TTCGAA	1 cut(s)	668
BstDEI	CTNAG	2 cut(s)	69, 102
BstF5I	GGATG	3 cut(s)	10, 93, 118
BstFNI	CGCG	1 cut(s)	277
BstKTI	GATC	4 cut(s)	68, 275, 292, 382
BstMAI	GTCTC	2 cut(s)	18, 347
BstMBI	GATC	4 cut(s)	65, 272, 289, 379
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 679
BstNI	CCWGG	4 cut(s)	98, 346, 632, 639
BstNSI	RCATGY	4 cut(s)	171, 252, 566, 626
BstSCI	CCNGG	4 cut(s)	96, 344, 630, 637
BstSFI	CTRYAG	1 cut(s)	61
BstUI	CGCG	1 cut(s)	277
BstV1I	GCAGC	3 cut(s)	226, 631, 660
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	2 cut(s)	65, 289
BstXI	CCANNNNNNTGG	1 cut(s)	638
BstYI	RGATCY	2 cut(s)	65, 289
Bsu15I	ATCGAT	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	13, 412
BsuTUI	ATCGAT	1 cut(s)	429
BtsCI	GGATG	3 cut(s)	10, 93, 118
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	400, 586
BveI	ACCTGC	1 cut(s)	208
CciI	TCATGA	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	336, 460
ClaI	ATCGAT	1 cut(s)	429
CsiI	ACCWGGT	1 cut(s)	637
Csp6I	GTAC	3 cut(s)	49, 342, 399
CviAII	CATG	6 cut(s)	137, 168, 249, 563, 623, 695
CviJI	RGCY	7 cut(s)	13, 101, 228, 368, 412, 499, 673
CviKI_1	RGCY	7 cut(s)	13, 101, 228, 368, 412, 499, 673
CviQI	GTAC	3 cut(s)	49, 342, 399
DdeI	CTNAG	2 cut(s)	69, 102
DpnI	GATC	4 cut(s)	67, 274, 291, 381
DpnII	GATC	4 cut(s)	65, 272, 289, 379
DraIII	CACNNNGTG	1 cut(s)	395
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	490
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	2 cut(s)	336, 460
Eco57I	CTGAAG	2 cut(s)	230, 467
EcoRII	CCWGG	4 cut(s)	96, 344, 630, 637
EcoT14I	CCWWGG	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	6 cut(s)	140, 171, 252, 566, 626, 698
FatI	CATG	6 cut(s)	136, 167, 248, 562, 622, 694
FauNDI	CATATG	2 cut(s)	219, 415
Fnu4HI	GCNGC	3 cut(s)	215, 620, 674
FokI	GGATG	3 cut(s)	17, 80, 125
Fsp4HI	GCNGC	3 cut(s)	215, 620, 674
FspBI	CTAG	2 cut(s)	186, 600
GluI	GCNGC	3 cut(s)	215, 620, 674
HaeIII	GGCC	2 cut(s)	13, 412
Hin1II	CATG	6 cut(s)	140, 171, 252, 566, 626, 698
HinfI	GANTC	4 cut(s)	57, 76, 242, 689
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	5 cut(s)	23, 81, 210, 615, 713
Hpy188III	TCNNGA	2 cut(s)	137, 193
Hpy8I	GTNNAC	1 cut(s)	336
HpyAV	CCTTC	2 cut(s)	124, 603
HpyCH4III	ACNGT	4 cut(s)	53, 473, 524, 581
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	3 cut(s)	203, 223, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 679
HpyF3I	CTNAG	2 cut(s)	69, 102
HpySE526I	ACGT	1 cut(s)	552
Hsp92II	CATG	6 cut(s)	140, 171, 252, 566, 626, 698
Kzo9I	GATC	4 cut(s)	65, 272, 289, 379
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	3 cut(s)	226, 631, 660
MabI	ACCWGGT	1 cut(s)	637
MaeI	CTAG	2 cut(s)	186, 600
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	4 cut(s)	67, 274, 291, 381
MboI	GATC	4 cut(s)	65, 272, 289, 379
MboII	GAAGA	6 cut(s)	85, 185, 465, 470, 473, 568
MfeI	CAATTG	1 cut(s)	513
MflI	RGATCY	2 cut(s)	65, 289
MluCI	AATT	4 cut(s)	513, 533, 572, 659
MlyI	GAGTC	1 cut(s)	70
MseI	TTAA	2 cut(s)	254, 504
MslI	CAYNNNNRTG	1 cut(s)	111
MspR9I	CCNGG	4 cut(s)	98, 346, 632, 639
MunI	CAATTG	1 cut(s)	513
MvaI	CCWGG	4 cut(s)	98, 346, 632, 639
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	2 cut(s)	220, 679
NdeI	CATATG	2 cut(s)	219, 415
NdeII	GATC	4 cut(s)	65, 272, 289, 379
NlaIII	CATG	6 cut(s)	140, 171, 252, 566, 626, 698
NlaIV	GGNNCC	2 cut(s)	291, 636
NspI	RCATGY	4 cut(s)	171, 252, 566, 626
NspV	TTCGAA	1 cut(s)	668
PagI	TCATGA	1 cut(s)	136
PciI	ACATGT	2 cut(s)	167, 248
PfeI	GAWTC	3 cut(s)	57, 242, 689
PkrI	GCNGC	3 cut(s)	216, 621, 675
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PscI	ACATGT	2 cut(s)	167, 248
Psp6I	CCWGG	4 cut(s)	96, 344, 630, 637
PspGI	CCWGG	4 cut(s)	96, 344, 630, 637
PspN4I	GGNNCC	2 cut(s)	291, 636
PspPI	GGNCC	2 cut(s)	336, 460
PsuI	RGATCY	2 cut(s)	65, 289
RsaI	GTAC	3 cut(s)	50, 343, 400
RsaNI	GTAC	3 cut(s)	49, 342, 399
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	254, 504
SatI	GCNGC	3 cut(s)	215, 620, 674
Sau3AI	GATC	4 cut(s)	65, 272, 289, 379
Sau96I	GGNCC	2 cut(s)	336, 460
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	4 cut(s)	98, 346, 632, 639
SexAI	ACCWGGT	1 cut(s)	637
SfcI	CTRYAG	1 cut(s)	61
SfuI	TTCGAA	1 cut(s)	668
SinI	GGWCC	2 cut(s)	336, 460
SmiMI	CAYNNNNRTG	1 cut(s)	111
SmlI	CTYRAG	2 cut(s)	236, 329
SmoI	CTYRAG	2 cut(s)	236, 329
Sse9I	AATT	4 cut(s)	513, 533, 572, 659
SsiI	CCGC	2 cut(s)	34, 676
SspMI	CTAG	2 cut(s)	186, 600
StyD4I	CCNGG	4 cut(s)	96, 344, 630, 637
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	4 cut(s)	53, 473, 524, 581
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	2 cut(s)	429, 668
TasI	AATT	4 cut(s)	513, 533, 572, 659
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	3 cut(s)	57, 242, 689
Tru1I	TTAA	2 cut(s)	254, 504
Tru9I	TTAA	2 cut(s)	254, 504
TscAI	CASTG	2 cut(s)	400, 586
TseI	GCWGC	3 cut(s)	214, 619, 673
TspRI	CASTG	2 cut(s)	400, 586
VpaK11BI	GGWCC	2 cut(s)	336, 460
XapI	RAATTY	3 cut(s)	533, 572, 659
XceI	RCATGY	4 cut(s)	171, 252, 566, 626
XspI	CTAG	2 cut(s)	186, 600
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.