Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Forward (+)

34205729 .. 34208186

Gene Structure 2458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0296700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCTGAGACAGAAGTTTCACTTGGTTTTAAAGAAGGTCGAGTTGTGGTGAGGAAGTTCTTGGCTAGGCCTCAGCATGAAGGAGTTGGTGCCATTGTTAGAAGAAGCATTGGGAGGTTTGAGCTGAGATACTTTGATCCTTTTCTTGTTCTGGATGAGTTCTCAGTTACTGCTCCTGCTGGATTCCCTGATCATCCACATAGAGGGTTTGAGACGGTGACCTACATGTTGCAGGGAGCCATCACACATGAAGATTTCGAAGGGCACAAGGGGACAATAGGAGCCGGCGATGTGCAGTGGATGACTGCAGGTAGAGGTATTGTTCACTCGGAAATGCCTGCAGCCCAAGGAACTCAAAAGGGTCTACAGTTGTGGATAAACCTCTCCTCCAAACATAAAATGATTGAGCCAAAGTACCAAGAAATGGTCAGCAAGGACATTGCAGAGGCTACAAAAGAAGGGATCAAGGTTAGAGTGATAGCAGGAGAAGCCTTGGGAACAAAGTCCCCAATCAACACAAGAACCCCAACCATGTACTTGGACTTCACTCTCAAACCAGGAGCTCACCTTCAGCAACCAATACCAACATCATGGAATGCATTTGTATACGTCTTGGAGGGGGAGGGCATTTTTGGAACTCCAAAGTCATTGCCAGTGGCAGGTCACCACCTTCTTCTTTTAGGATCTGGGGATGGGTTGGAGGCATGGAACATGTCTTCCAAGAACCTTAGGTTTATATTAGTTGGAGGTCAACCTTTGGGGGAGCCTGTAAAGCAACTAGGGCCCTTTGTGATGAACACTGAGGAAGAGATTGATCAAACCGTTGATGACTTTGAAAACTGTGTCAATGGATTTGAGAAGGCAACACATTGGAGATCTGGATCTGCACTTAGCCTTGATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

301

Amino Acids

33.18

Weight (kDa)

5.89

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	33 - 126	5.8e-32	Pirin
Pirin_C	PF05726	179 - 283	2.5e-31	Pirin C-terminal cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	299, 650
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	424
AccI	GTMKAC	2 cut(s)	364, 606
AclWI	GGATC	4 cut(s)	131, 470, 691, 889
AcuI	CTGAAG	1 cut(s)	554
AfaI	GTAC	2 cut(s)	416, 536
AfiI	CCNNNNNNNGG	3 cut(s)	203, 424, 659
AflIII	ACRYGT	2 cut(s)	225, 711
AgsI	TTSAA	1 cut(s)	836
AjnI	CCWGG	1 cut(s)	556
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AloI	GAACNNNNNNTCC	2 cut(s)	701, 733
AluBI	AGCT	2 cut(s)	124, 563
AluI	AGCT	2 cut(s)	124, 563
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	2 cut(s)	2, 206
AlwI	GGATC	4 cut(s)	131, 470, 691, 889
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	68, 782
ApaI	GGGCCC	1 cut(s)	786
ApeKI	GCWGC	1 cut(s)	341
AspS9I	GGNCC	2 cut(s)	782, 783
AsuHPI	GGTGA	4 cut(s)	61, 229, 557, 656
AsuII	TTCGAA	1 cut(s)	258
AxyI	CCTNAGG	1 cut(s)	728
BaeGI	GKGCMC	2 cut(s)	267, 786
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	2 cut(s)	565, 786
BarI	GAAGNNNNNNTAC	2 cut(s)	527, 559
BbsI	GAAGAC	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	565
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	2 cut(s)	248, 686
BciT130I	CCWGG	1 cut(s)	558
BclI	TGATCA	2 cut(s)	190, 814
BcoDI	GTCTC	2 cut(s)	2, 206
BfaI	CTAG	2 cut(s)	66, 779
BfmI	CTRYAG	3 cut(s)	306, 339, 365
BfuAI	ACCTGC	2 cut(s)	299, 650
BglII	AGATCT	1 cut(s)	875
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	558
BmgT120I	GGNCC	2 cut(s)	782, 783
BmiI	GGNNCC	5 cut(s)	91, 238, 283, 765, 784
BmrFI	CCNGG	1 cut(s)	558
BpiI	GAAGAC	1 cut(s)	708
Bpu10I	CCTNAGC	1 cut(s)	72
Bpu14I	TTCGAA	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	880
BsaJI	CCNNGG	2 cut(s)	346, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 424, 659
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	653
Bse21I	CCTNAGG	1 cut(s)	728
Bse3DI	GCAATG	2 cut(s)	438, 647
Bse8I	GATNNNNATC	1 cut(s)	880
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	2 cut(s)	346, 492
BseGI	GGATG	4 cut(s)	160, 193, 306, 697
BseJI	GATNNNNATC	1 cut(s)	880
BseLI	CCNNNNNNNGG	3 cut(s)	203, 424, 659
BseMI	GCAATG	2 cut(s)	438, 647
BseMII	CTCAG	4 cut(s)	86, 116, 177, 792
BseNI	ACTGG	1 cut(s)	653
BseRI	GAGGAG	1 cut(s)	376
BseSI	GKGCMC	2 cut(s)	267, 786
BseXI	GCAGC	1 cut(s)	353
BsgI	GTGCAG	2 cut(s)	314, 870
BshFI	GGCC	2 cut(s)	70, 784
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	565
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	2 cut(s)	286, 490
BslI	CCNNNNNNNGG	3 cut(s)	203, 424, 659
BsmAI	GTCTC	2 cut(s)	2, 206
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	2 cut(s)	286, 490
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	2 cut(s)	70, 784
Bsp119I	TTCGAA	1 cut(s)	258
Bsp120I	GGGCCC	1 cut(s)	782
Bsp1286I	GDGCHC	3 cut(s)	267, 565, 786
Bsp143I	GATC	7 cut(s)	136, 190, 462, 683, 814, 875, 881
BspANI	GGCC	2 cut(s)	70, 784
BspCNI	CTCAG	4 cut(s)	85, 117, 176, 793
BspLI	GGNNCC	5 cut(s)	91, 238, 283, 765, 784
BspMAI	CTGCAG	2 cut(s)	310, 343
BspMI	ACCTGC	2 cut(s)	299, 650
BspPI	GGATC	4 cut(s)	131, 470, 691, 889
BspT104I	TTCGAA	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	89
BsrDI	GCAATG	2 cut(s)	438, 647
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	653
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	346, 492
BssMI	GATC	7 cut(s)	136, 190, 462, 683, 814, 875, 881
BssNAI	GTATAC	1 cut(s)	607
BssT1I	CCWWGG	2 cut(s)	346, 492
Bst1107I	GTATAC	1 cut(s)	607
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	4 cut(s)	217, 369, 823, 842
Bst6I	CTCTTC	1 cut(s)	801
BstBI	TTCGAA	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	286, 339
BstDEI	CTNAG	7 cut(s)	6, 72, 125, 163, 728, 801, 890
BstEII	GGTNACC	2 cut(s)	217, 662
BstF5I	GGATG	4 cut(s)	160, 193, 306, 697
BstKTI	GATC	7 cut(s)	139, 193, 465, 686, 817, 878, 884
BstMAI	GTCTC	2 cut(s)	2, 206
BstMBI	GATC	7 cut(s)	136, 190, 462, 683, 814, 875, 881
BstMWI	GCNNNNNNNGC	3 cut(s)	488, 772, 781
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	2 cut(s)	229, 715
BstPI	GGTNACC	2 cut(s)	217, 662
BstSCI	CCNGG	1 cut(s)	556
BstSFI	CTRYAG	3 cut(s)	306, 339, 365
BstSLI	GKGCMC	2 cut(s)	267, 786
BstV1I	GCAGC	1 cut(s)	353
BstV2I	GAAGAC	1 cut(s)	708
BstX2I	RGATCY	3 cut(s)	683, 875, 881
BstXI	CCANNNNNNTGG	2 cut(s)	538, 591
BstYI	RGATCY	3 cut(s)	683, 875, 881
BstZ17I	GTATAC	1 cut(s)	607
Bsu36I	CCTNAGG	1 cut(s)	728
BsuRI	GGCC	2 cut(s)	70, 784
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	4 cut(s)	160, 193, 306, 697
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	3 cut(s)	302, 660, 798
BveI	ACCTGC	2 cut(s)	299, 650
Cac8I	GCNNGC	2 cut(s)	286, 339
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	782, 783
Csp6I	GTAC	2 cut(s)	415, 535
CviAII	CATG	7 cut(s)	77, 226, 248, 532, 591, 705, 712
CviQI	GTAC	2 cut(s)	415, 535
DdeI	CTNAG	7 cut(s)	6, 72, 125, 163, 728, 801, 890
DpnI	GATC	7 cut(s)	138, 192, 464, 685, 816, 877, 883
DpnII	GATC	7 cut(s)	136, 190, 462, 683, 814, 875, 881
DraI	TTTAAA	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	801
EarI	CTCTTC	1 cut(s)	801
Ecl136II	GAGCTC	1 cut(s)	563
Eco130I	CCWWGG	2 cut(s)	346, 492
Eco147I	AGGCCT	1 cut(s)	70
Eco24I	GRGCYC	2 cut(s)	565, 786
Eco53kI	GAGCTC	1 cut(s)	563
Eco57I	CTGAAG	1 cut(s)	554
Eco81I	CCTNAGG	1 cut(s)	728
Eco91I	GGTNACC	2 cut(s)	217, 662
EcoICRI	GAGCTC	1 cut(s)	563
EcoO109I	RGGNCCY	2 cut(s)	782, 783
EcoO65I	GGTNACC	2 cut(s)	217, 662
EcoRII	CCWGG	1 cut(s)	556
EcoT14I	CCWWGG	2 cut(s)	346, 492
EcoT22I	ATGCAT	1 cut(s)	601
EcoT38I	GRGCYC	2 cut(s)	565, 786
ErhI	CCWWGG	2 cut(s)	346, 492
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	7 cut(s)	80, 229, 251, 535, 594, 708, 715
FalI	AAGNNNNNCTT	1 cut(s)	38
FaqI	GGGAC	2 cut(s)	286, 490
FatI	CATG	7 cut(s)	76, 225, 247, 531, 590, 704, 711
FbaI	TGATCA	2 cut(s)	190, 814
FblI	GTMKAC	2 cut(s)	364, 606
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	4 cut(s)	167, 180, 313, 704
FriOI	GRGCYC	2 cut(s)	565, 786
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	2 cut(s)	66, 779
GluI	GCNGC	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	70, 784
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	7 cut(s)	80, 229, 251, 535, 594, 708, 715
HincII	GTYRAC	1 cut(s)	752
HindII	GTYRAC	1 cut(s)	752
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	4 cut(s)	61, 229, 557, 656
Hpy166II	GTNNAC	4 cut(s)	325, 365, 607, 752
Hpy188I	TCNGA	2 cut(s)	7, 331
Hpy188III	TCNNGA	2 cut(s)	152, 879
Hpy8I	GTNNAC	4 cut(s)	325, 365, 607, 752
HpyAV	CCTTC	7 cut(s)	29, 74, 254, 452, 578, 680, 853
HpyCH4III	ACNGT	4 cut(s)	217, 369, 823, 842
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	7 cut(s)	232, 295, 308, 341, 443, 599, 887
HpyF10VI	GCNNNNNNNGC	3 cut(s)	488, 772, 781
HpyF3I	CTNAG	7 cut(s)	6, 72, 125, 163, 728, 801, 890
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	7 cut(s)	80, 229, 251, 535, 594, 708, 715
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Ksp22I	TGATCA	2 cut(s)	190, 814
Kzo9I	GATC	7 cut(s)	136, 190, 462, 683, 814, 875, 881
LmnI	GCTCC	5 cut(s)	178, 236, 281, 560, 763
Lsp1109I	GCAGC	1 cut(s)	353
MaeI	CTAG	2 cut(s)	66, 779
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	3 cut(s)	166, 217, 662
MalI	GATC	7 cut(s)	138, 192, 464, 685, 816, 877, 883
MboI	GATC	7 cut(s)	136, 190, 462, 683, 814, 875, 881
MboII	GAAGA	5 cut(s)	114, 263, 665, 708, 818
MflI	RGATCY	3 cut(s)	683, 875, 881
MhlI	GDGCHC	3 cut(s)	267, 565, 786
MmeI	TCCRAC	2 cut(s)	678, 724
Mph1103I	ATGCAT	1 cut(s)	601
MroNI	GCCGGC	1 cut(s)	284
MseI	TTAA	1 cut(s)	30
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	558
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	3 cut(s)	488, 772, 781
NaeI	GCCGGC	1 cut(s)	286
NdeII	GATC	7 cut(s)	136, 190, 462, 683, 814, 875, 881
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	7 cut(s)	80, 229, 251, 535, 594, 708, 715
NlaIV	GGNNCC	5 cut(s)	91, 238, 283, 765, 784
NmuCI	GTSAC	2 cut(s)	217, 662
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	2 cut(s)	229, 715
NspV	TTCGAA	1 cut(s)	258
PceI	AGGCCT	1 cut(s)	70
PciI	ACATGT	2 cut(s)	225, 711
PctI	GAATGC	1 cut(s)	601
PdiI	GCCGGC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	183
PflMI	CCANNNNNTGG	1 cut(s)	424
PkrI	GCNGC	1 cut(s)	343
PscI	ACATGT	2 cut(s)	225, 711
Psp124BI	GAGCTC	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	556
PspEI	GGTNACC	2 cut(s)	217, 662
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	5 cut(s)	91, 238, 283, 765, 784
PspOMI	GGGCCC	1 cut(s)	782
PspPI	GGNCC	2 cut(s)	782, 783
PstI	CTGCAG	2 cut(s)	310, 343
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	3 cut(s)	683, 875, 881
RsaI	GTAC	2 cut(s)	416, 536
RsaNI	GTAC	2 cut(s)	415, 535
SacI	GAGCTC	1 cut(s)	565
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	7 cut(s)	136, 190, 462, 683, 814, 875, 881
Sau96I	GGNCC	2 cut(s)	782, 783
ScrFI	CCNGG	1 cut(s)	558
SduI	GDGCHC	3 cut(s)	267, 565, 786
SfcI	CTRYAG	3 cut(s)	306, 339, 365
SfuI	TTCGAA	1 cut(s)	258
SseBI	AGGCCT	1 cut(s)	70
SspMI	CTAG	2 cut(s)	66, 779
SstI	GAGCTC	1 cut(s)	565
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	556
StyI	CCWWGG	2 cut(s)	346, 492
TaaI	ACNGT	4 cut(s)	217, 369, 823, 842
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	2 cut(s)	40, 258
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	3 cut(s)	302, 660, 805
TseFI	GTSAC	2 cut(s)	217, 662
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	2 cut(s)	217, 662
TspDTI	ATGAA	3 cut(s)	93, 264, 809
TspRI	CASTG	3 cut(s)	302, 660, 805
Van91I	CCANNNNNTGG	1 cut(s)	424
XceI	RCATGY	2 cut(s)	229, 715
XmiI	GTMKAC	2 cut(s)	364, 606
XspI	CTAG	2 cut(s)	66, 779
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.