Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Reverse (-)

15860976 .. 15867593

Gene Structure 6618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGAGGAAGCTGAAGCCGAGACGGAGGTGCCTACTTTCAGGGACATTAGGCGCTATTACTGCGATTACTGTGGCATCTGCAGGTCCAAAAAGTCCCTCATTGCTTCTCACGTCCTCACCCACCACAAGGACGAGAGGGAAATGGCTGAGGCCAATGGAGATGGCGATTCAGAAGCTGAGAGAGGAAAATCCAATACTTGCCAGGAATGTGGGCTTAGTTTCAAAAAACCTGCACATCTCAGGCAACATATGCAGAGTCATTCCCTTGAGAACTCCAAAATGCAAGAGGGTTCTGACTTGAATGGACTAGTACCAGGTGGGAGACCTCCTGTGAAGCTCCATCAAGTGAACCTCAGTCACGCAAGACCATATGTTTGTTCAGTGGATGATTGTCATTCCAGCTACAGAAGAAAAGACCACTTGACTCGCCATCTATTTCATCACCAAGGAAAACTCTTTAAGTGTCTAATTGAGAACTGCAATCGTGAATTTGCCTTTCAAGGTAACATGACTAGGCATGTCAGTGAACTTCATAGTGAGGATTGCCCTTCGGCCAATGATGGATGTCAGAAGCAGCATGTGTGCCAAGAAAAAGGTTGCGGAAAGGTGTTCAGATTTGCTTCCCAGCTGCGGAAGCATGAGGATTCCCATGTGAAGTTAGATAGAGTGGAGGCATTTTGTTCTGAACCAGGTTGTATGAACCAATTTTCTAATGAGCAATGCCTTAAAGCTCATATTCAGTCCTGCCACCAACATATTACCTGTGAGATATGTGGGACCAAACAGCTGAAAAAGAATATCAAAAGTCATCTTCGCACACATGAAGAGGGAGATTCAATGGAGAGAATTAAATGTGATTATGAGGGGTGTCTTCGGACGTTTACTAAAAAATCGAATCTCCGTCAACATGTGAAGGCTGTTCACCTTGAAAATAAACCATTTGTCTGTTGCTTTCCGGGTTGTGGCAAAAGATTTGCCTACAAGCATGTGAAAGACAACCATGAAAAGAGTGGATGCCATGTCCATGCACACGGGGACTTTGAAGAGGCTGATGAAAAATTCCGGTCCAGGCCAAGGGGAGGGCGTAAGAGGCAGTGCCCCACTGTAGAAATGTTGGTTCGGAATTGGGTGAGTCCTTCAAAACAATCGAGGCAGGGCTCTGAGAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

390

Amino Acids

44.83

Weight (kDa)

8.61

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	72, 238
AccB1I	GGYRCC	1 cut(s)	28
AciI	CCGC	2 cut(s)	600, 631
AcoI	YGGCCR	1 cut(s)	552
AcsI	RAATTY	2 cut(s)	488, 1058
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	5 cut(s)	127, 630, 962, 1074, 1079
AflIII	ACRYGT	1 cut(s)	907
AgsI	TTSAA	7 cut(s)	223, 301, 500, 837, 929, 1043, 1140
AhlI	ACTAGT	1 cut(s)	307
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	4 cut(s)	201, 313, 688, 1067
AluBI	AGCT	7 cut(s)	11, 176, 337, 402, 628, 731, 787
AluI	AGCT	7 cut(s)	11, 176, 337, 402, 628, 731, 787
Alw26I	GTCTC	2 cut(s)	14, 316
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	3 cut(s)	150, 552, 1070
ApeKI	GCWGC	2 cut(s)	574, 628
ApoI	RAATTY	2 cut(s)	488, 1058
ArsI	GACNNNNNNTTYG	2 cut(s)	357, 389
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	3 cut(s)	84, 777, 1065
AsuC2I	CCSGG	1 cut(s)	957
AsuHPI	GGTGA	4 cut(s)	109, 434, 914, 1141
AvaII	GGWCC	3 cut(s)	84, 777, 1065
BaeGI	GKGCMC	1 cut(s)	1100
BanI	GGYRCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	1160
BbsI	GAAGAC	1 cut(s)	863
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	586, 615
BccI	CCATC	4 cut(s)	155, 348, 438, 554
BciT130I	CCWGG	4 cut(s)	203, 315, 690, 1069
BcnI	CCSGG	1 cut(s)	957
BcoDI	GTCTC	2 cut(s)	14, 316
BcuI	ACTAGT	1 cut(s)	307
BfaI	CTAG	2 cut(s)	308, 513
BfmI	CTRYAG	3 cut(s)	79, 403, 1104
BfoI	RGCGCY	1 cut(s)	55
BfuAI	ACCTGC	2 cut(s)	72, 238
BisI	GCNGC	2 cut(s)	575, 629
BlsI	GCNGC	2 cut(s)	576, 630
Bme1390I	CCNGG	5 cut(s)	203, 315, 690, 957, 1069
Bme18I	GGWCC	3 cut(s)	84, 777, 1065
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	3 cut(s)	84, 777, 1065
BmiI	GGNNCC	2 cut(s)	30, 778
BmrFI	CCNGG	5 cut(s)	203, 315, 690, 957, 1069
BmsI	GCATC	2 cut(s)	84, 1004
BpiI	GAAGAC	1 cut(s)	863
Bpu10I	CCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	957
BsaI	GGTCTC	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	445, 1073
BsaWI	WCCGGW	1 cut(s)	1062
Bsc4I	CCNNNNNNNGG	5 cut(s)	127, 630, 962, 1074, 1079
Bse3DI	GCAATG	2 cut(s)	99, 725
BseBI	CCWGG	4 cut(s)	203, 315, 690, 1069
BseDI	CCNNGG	2 cut(s)	445, 1073
BseGI	GGATG	3 cut(s)	391, 569, 1019
BseLI	CCNNNNNNNGG	5 cut(s)	127, 630, 962, 1074, 1079
BseMI	GCAATG	2 cut(s)	99, 725
BseMII	CTCAG	5 cut(s)	138, 168, 253, 367, 1152
BseSI	GKGCMC	1 cut(s)	1100
BseXI	GCAGC	2 cut(s)	586, 615
BseYI	CCCAGC	1 cut(s)	624
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	3 cut(s)	152, 554, 1072
BshNI	GGYRCC	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	956, 1063
BslFI	GGGAC	4 cut(s)	56, 79, 790, 1049
BslI	CCNNNNNNNGG	5 cut(s)	127, 630, 962, 1074, 1079
BsmAI	GTCTC	2 cut(s)	14, 316
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	4 cut(s)	56, 79, 790, 1049
BsnI	GGCC	3 cut(s)	152, 554, 1072
Bso31I	GGTCTC	1 cut(s)	316
Bsp1286I	GDGCHC	2 cut(s)	1100, 1160
BspACI	CCGC	2 cut(s)	600, 631
BspANI	GGCC	3 cut(s)	152, 554, 1072
BspCNI	CTCAG	5 cut(s)	139, 169, 252, 366, 1153
BspLI	GGNNCC	2 cut(s)	30, 778
BspMAI	CTGCAG	1 cut(s)	83
BspMI	ACCTGC	2 cut(s)	72, 238
BspT107I	GGYRCC	1 cut(s)	28
BspTNI	GGTCTC	1 cut(s)	316
BsrDI	GCAATG	2 cut(s)	99, 725
BssECI	CCNNGG	2 cut(s)	445, 1073
BssT1I	CCWWGG	2 cut(s)	445, 1073
Bst2UI	CCWGG	4 cut(s)	203, 315, 690, 1069
Bst4CI	ACNGT	2 cut(s)	71, 1105
Bst6I	CTCTTC	2 cut(s)	819, 1038
BstAPI	GCANNNNNTGC	1 cut(s)	250
BstDEI	CTNAG	6 cut(s)	147, 177, 215, 239, 353, 1161
BstF5I	GGATG	3 cut(s)	391, 569, 1019
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstMAI	GTCTC	2 cut(s)	14, 316
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 250, 634, 1090
BstNI	CCWGG	4 cut(s)	203, 315, 690, 1069
BstNSI	RCATGY	4 cut(s)	521, 581, 911, 989
BstSCI	CCNGG	5 cut(s)	201, 313, 688, 955, 1067
BstSFI	CTRYAG	3 cut(s)	79, 403, 1104
BstSLI	GKGCMC	1 cut(s)	1100
BstV1I	GCAGC	2 cut(s)	586, 615
BstV2I	GAAGAC	1 cut(s)	863
BstXI	CCANNNNNNTGG	1 cut(s)	209
BsuRI	GGCC	3 cut(s)	152, 554, 1072
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	391, 569, 1019
BtsI	GCAGTG	1 cut(s)	1100
BtsIMutI	CAGTG	4 cut(s)	387, 529, 1100, 1101
BveI	ACCTGC	2 cut(s)	72, 238
CaiI	CAGNNNCTG	1 cut(s)	176
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	3 cut(s)	84, 777, 1065
CsiI	ACCWGGT	2 cut(s)	313, 688
Csp6I	GTAC	1 cut(s)	311
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	6 cut(s)	147, 177, 215, 239, 353, 1161
EaeI	YGGCCR	1 cut(s)	552
Eam1104I	CTCTTC	2 cut(s)	819, 1038
EarI	CTCTTC	2 cut(s)	819, 1038
Eco130I	CCWWGG	2 cut(s)	445, 1073
Eco24I	GRGCYC	1 cut(s)	1160
Eco31I	GGTCTC	1 cut(s)	316
Eco47I	GGWCC	3 cut(s)	84, 777, 1065
Eco57I	CTGAAG	1 cut(s)	33
EcoRII	CCWGG	4 cut(s)	201, 313, 688, 1067
EcoT14I	CCWWGG	2 cut(s)	445, 1073
EcoT38I	GRGCYC	1 cut(s)	1160
ErhI	CCWWGG	2 cut(s)	445, 1073
Esp3I	CGTCTC	1 cut(s)	14
FaqI	GGGAC	4 cut(s)	56, 79, 790, 1049
FauNDI	CATATG	2 cut(s)	249, 370
Fnu4HI	GCNGC	2 cut(s)	575, 629
FokI	GGATG	3 cut(s)	398, 576, 1026
FriOI	GRGCYC	1 cut(s)	1160
Fsp4HI	GCNGC	2 cut(s)	575, 629
FspBI	CTAG	2 cut(s)	308, 513
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	2 cut(s)	575, 629
GsaI	CCCAGC	1 cut(s)	628
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	3 cut(s)	152, 554, 1072
HapII	CCGG	2 cut(s)	956, 1063
HhaI	GCGC	1 cut(s)	54
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	905
HindII	GTYRAC	1 cut(s)	905
HinfI	GANTC	7 cut(s)	167, 256, 424, 644, 833, 895, 1132
HpaII	CCGG	2 cut(s)	956, 1063
HphI	GGTGA	4 cut(s)	109, 434, 914, 1141
Hpy166II	GTNNAC	5 cut(s)	349, 527, 882, 905, 922
Hpy188I	TCNGA	9 cut(s)	172, 295, 570, 614, 685, 876, 1122, 1162, 1172
Hpy188III	TCNNGA	1 cut(s)	485
Hpy8I	GTNNAC	5 cut(s)	349, 527, 882, 905, 922
HpyAV	CCTTC	3 cut(s)	558, 907, 1146
HpyCH4III	ACNGT	2 cut(s)	71, 1105
HpyCH4IV	ACGT	2 cut(s)	111, 878
HpyCH4V	TGCA	6 cut(s)	81, 233, 253, 283, 480, 1028
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 250, 634, 1090
HpyF3I	CTNAG	6 cut(s)	147, 177, 215, 239, 353, 1161
HpySE526I	ACGT	2 cut(s)	111, 878
HspAI	GCGC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	342
Lsp1109I	GCAGC	2 cut(s)	586, 615
LweI	GCATC	2 cut(s)	84, 1004
MabI	ACCWGGT	2 cut(s)	313, 688
MaeI	CTAG	2 cut(s)	308, 513
MaeII	ACGT	2 cut(s)	111, 878
MaeIII	GTNAC	2 cut(s)	356, 503
MboII	GAAGA	5 cut(s)	420, 803, 836, 863, 1055
MhlI	GDGCHC	2 cut(s)	1100, 1160
MluCI	AATT	6 cut(s)	468, 488, 704, 846, 1058, 1123
MlyI	GAGTC	3 cut(s)	265, 418, 1141
MseI	TTAA	3 cut(s)	459, 726, 849
MslI	CAYNNNNRTG	2 cut(s)	522, 1023
MspA1I	CMGCKG	2 cut(s)	628, 787
MspI	CCGG	2 cut(s)	956, 1063
MspR9I	CCNGG	5 cut(s)	203, 315, 690, 957, 1069
MvaI	CCWGG	4 cut(s)	203, 315, 690, 1069
MwoI	GCNNNNNNNGC	4 cut(s)	60, 250, 634, 1090
NciI	CCSGG	1 cut(s)	957
NdeI	CATATG	2 cut(s)	249, 370
NlaIV	GGNNCC	2 cut(s)	30, 778
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	356
NspI	RCATGY	4 cut(s)	521, 581, 911, 989
PciI	ACATGT	1 cut(s)	907
PfeI	GAWTC	4 cut(s)	167, 644, 833, 895
PkrI	GCNGC	2 cut(s)	576, 630
PleI	GAGTC	3 cut(s)	264, 418, 1140
PpsI	GAGTC	3 cut(s)	264, 418, 1140
PscI	ACATGT	1 cut(s)	907
Psp6I	CCWGG	4 cut(s)	201, 313, 688, 1067
PspFI	CCCAGC	1 cut(s)	624
PspGI	CCWGG	4 cut(s)	201, 313, 688, 1067
PspN4I	GGNNCC	2 cut(s)	30, 778
PspPI	GGNCC	3 cut(s)	84, 777, 1065
PstI	CTGCAG	1 cut(s)	83
PstNI	CAGNNNCTG	1 cut(s)	176
PvuII	CAGCTG	2 cut(s)	628, 787
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
RseI	CAYNNNNRTG	2 cut(s)	522, 1023
SaqAI	TTAA	3 cut(s)	459, 726, 849
SatI	GCNGC	2 cut(s)	575, 629
Sau96I	GGNCC	3 cut(s)	84, 777, 1065
SchI	GAGTC	3 cut(s)	265, 418, 1141
ScrFI	CCNGG	5 cut(s)	203, 315, 690, 957, 1069
SduI	GDGCHC	2 cut(s)	1100, 1160
SexAI	ACCWGGT	2 cut(s)	313, 688
SfaNI	GCATC	2 cut(s)	84, 1004
SfcI	CTRYAG	3 cut(s)	79, 403, 1104
SinI	GGWCC	3 cut(s)	84, 777, 1065
SmiMI	CAYNNNNRTG	2 cut(s)	522, 1023
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SpeI	ACTAGT	1 cut(s)	307
Sse9I	AATT	6 cut(s)	468, 488, 704, 846, 1058, 1123
SsiI	CCGC	2 cut(s)	600, 631
SspMI	CTAG	2 cut(s)	308, 513
StyD4I	CCNGG	5 cut(s)	201, 313, 688, 955, 1067
StyI	CCWWGG	2 cut(s)	445, 1073
TaaI	ACNGT	2 cut(s)	71, 1105
TaiI	ACGT	2 cut(s)	114, 881
TaqI	TCGA	2 cut(s)	893, 1148
TasI	AATT	6 cut(s)	468, 488, 704, 846, 1058, 1123
TfiI	GAWTC	4 cut(s)	167, 644, 833, 895
Tru1I	TTAA	3 cut(s)	459, 726, 849
Tru9I	TTAA	3 cut(s)	459, 726, 849
TscAI	CASTG	4 cut(s)	387, 529, 1100, 1108
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	2 cut(s)	574, 628
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	6 cut(s)	428, 521, 713, 837, 1017, 1068
TspGWI	ACGGA	2 cut(s)	38, 890
TspRI	CASTG	4 cut(s)	387, 529, 1100, 1108
VpaK11BI	GGWCC	3 cut(s)	84, 777, 1065
XapI	RAATTY	2 cut(s)	488, 1058
XceI	RCATGY	4 cut(s)	521, 581, 911, 989
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1007
XspI	CTAG	2 cut(s)	308, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.