Rh2CG055900

Zinc finger protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
4411294 .. 4414560
3267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG055900.1

Sequence Viewer

Length: 1254 bp
ATGGATGAGAGGCCGATTTTCAGAGACATAAGGCGGTATTACTGCGAGTACTGTGGAATCTGTAGATCTAAGAAGACTCTGATTGCTTCTCACATCCAGGCTCAGCACAAGGATGAGATGGAAATGGCGAAGGGTCATGCGGAAGTTGTGGTGGAGAAGTCTAATACATGTGAAGAATGTGGTGCTAGTTTCAAGAAACCTGCACATCTGAAGCAGCATATGCAAAGCCATTCCCTTGAGGAATCAACATGTTTAGGAACTAAACCATTTGGATCGCGTGAAGCATTGGATCCCACCAAAGAACTCCAAAATGCGAGAGGGTATGGACTTGAGTGGACCAGTACCAGGGGGGAGACCTCCTGTGAAGCTCCATCAAGTGATCCTCAATCACGCAGTGGTACTTTTGAGAGGCCATATGTTTGCACAATCGATGATTGTCGTTCTACTTATAGAAGAAAGGACCATTTGAACCGTCATCTTCTTCAGCACCAAGGGAAGCTCTTTAAGTGTCCAATTGAGAACTGTAAGAGTGAATTTGCTTTTCAAGGTAACGTGAAGAGGCATGTTGTGGAATTTCACAGTGAGGATTGCCCTTCTACTAGCGTTGAAGGTCAGAAGCAGCATGTGTGCCAGGAACCTGGTTGTGGAAAGGTGTTCAAATTTGCTTCGAAGCTGCGGAAGCACGAGGATTCTCATGTTAAGCTGGACTCAGTGGAGGCCTTCTGCTCTGAACCAGATTGTATGAAATATTTTTCTAATAAGCAATGCCTTAAGGACCATATCCAGTCCTGCCACACTCATATTACTTGTGAGATATGTGGGAAGAAGGAGTGGAAAAAGAACATCAAAAGCCATCTCCGTACTCATGAAGAGGGAGGTTCTTCATTGGAAATTAAATGTGATTTTAAGGGTTGTCTTCTCACATTTTCAAAAAAATCAAATCTTCTTCAACATGTGAAGGCTGTACACCTCCAACAAAAACCCTTCGCTTGTAGCTTCTCAGGCTGTGGCAAGACATTCTCATACAAGCACGTGAGAGATAAGCATGAGAAGTCTGGATGTCATGTATATGCCTATGGGGATTTTGAAGAGGCTGATGAGCAATTCCGGTCAAGGCCAAGGGGCGGGCGTAAGAGGCAGTGTCCGACAGTAGAAATGCTTGTACGAAAAAGGGTTACCCCACCAGATCAATTCGGCCCAGAGACTGAGTTCCTCTCTCAGTTCTTCTCACAAGAAGAGGAAGATGAACAGTGA

Protein Analysis

417

Amino Acids

47.97

Weight (kDa)

8.29

Isoelectric Point (pI)

58.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000543)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis pycom02g04050 pycom15g36580
rosa_chinensis RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 208
AccII CGCG 1 cut(s) 277
AciI CCGC 4 cut(s) 34, 140, 676, 1125
AclWI GGATC 4 cut(s) 280, 284, 297, 374
AcsI RAATTY 3 cut(s) 533, 572, 659
AcuI CTGAAG 2 cut(s) 230, 467
AcvI CACGTG 1 cut(s) 1033
AdeI CACNNNGTG 1 cut(s) 395
AfaI GTAC 6 cut(s) 50, 343, 400, 862, 966, 1164
AfiI CCNNNNNNNGG 3 cut(s) 345, 644, 1124
AflII CTTAAG 1 cut(s) 770
AflIII ACRYGT 3 cut(s) 167, 248, 952
AgsI TTSAA 8 cut(s) 193, 469, 545, 608, 658, 930, 950, 1088
AjnI CCWGG 4 cut(s) 96, 344, 630, 637
AluBI AGCT 5 cut(s) 368, 499, 673, 703, 996
AluI AGCT 5 cut(s) 368, 499, 673, 703, 996
Alw26I GTCTC 3 cut(s) 18, 347, 1196
AlwI GGATC 4 cut(s) 280, 284, 297, 374
AlwNI CAGNNNCTG 1 cut(s) 1205
AoxI GGCC 5 cut(s) 11, 410, 717, 1115, 1195
ApeKI GCWGC 3 cut(s) 214, 619, 673
ApoI RAATTY 3 cut(s) 533, 572, 659
AspS9I GGNCC 4 cut(s) 336, 460, 775, 1196
AsuII TTCGAA 1 cut(s) 668
AvaII GGWCC 3 cut(s) 336, 460, 775
BamHI GGATCC 1 cut(s) 289
BauI CACGAG 1 cut(s) 683
BbrPI CACGTG 1 cut(s) 1033
BbsI GAAGAC 2 cut(s) 80, 908
BbvI GCAGC 3 cut(s) 226, 631, 660
BccI CCATC 3 cut(s) 112, 379, 861
BciT130I CCWGG 4 cut(s) 98, 346, 632, 639
BcoDI GTCTC 3 cut(s) 18, 347, 1196
BfaI CTAG 2 cut(s) 186, 600
BfmI CTRYAG 1 cut(s) 61
BfrI CTTAAG 1 cut(s) 770
BfuAI ACCTGC 1 cut(s) 208
BglII AGATCT 1 cut(s) 65
BisI GCNGC 3 cut(s) 215, 620, 674
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 3 cut(s) 216, 621, 675
BmcAI AGTACT 1 cut(s) 50
Bme1390I CCNGG 4 cut(s) 98, 346, 632, 639
Bme18I GGWCC 3 cut(s) 336, 460, 775
BmgT120I GGNCC 4 cut(s) 336, 460, 775, 1196
BmiI GGNNCC 2 cut(s) 291, 636
BmrFI CCNGG 4 cut(s) 98, 346, 632, 639
BpiI GAAGAC 2 cut(s) 80, 908
BplI GAGNNNNNCTC 2 cut(s) 1199, 1231
Bpu1102I GCTNAGC 1 cut(s) 102
Bpu14I TTCGAA 1 cut(s) 668
BpuEI CTTGAG 2 cut(s) 257, 350
Bsa29I ATCGAT 1 cut(s) 429
BsaAI YACGTR 1 cut(s) 1033
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 3 cut(s) 345, 490, 1118
BsaWI WCCGGW 1 cut(s) 1107
Bsc4I CCNNNNNNNGG 3 cut(s) 345, 644, 1124
Bse1I ACTGG 2 cut(s) 339, 784
Bse3DI GCAATG 1 cut(s) 770
BseBI CCWGG 4 cut(s) 98, 346, 632, 639
BseCI ATCGAT 1 cut(s) 429
BseDI CCNNGG 3 cut(s) 345, 490, 1118
BseGI GGATG 4 cut(s) 10, 93, 118, 1064
BseLI CCNNNNNNNGG 3 cut(s) 345, 644, 1124
BseMI GCAATG 1 cut(s) 770
BseMII CTCAG 5 cut(s) 116, 723, 1014, 1197, 1232
BseNI ACTGG 2 cut(s) 339, 784
BseXI GCAGC 3 cut(s) 226, 631, 660
BsgI GTGCAG 1 cut(s) 186
Bsh1236I CGCG 1 cut(s) 277
BshFI GGCC 5 cut(s) 13, 412, 719, 1117, 1197
BshVI ATCGAT 1 cut(s) 429
BsiSI CCGG 1 cut(s) 1108
BslI CCNNNNNNNGG 3 cut(s) 345, 644, 1124
BsmAI GTCTC 3 cut(s) 18, 347, 1196
BsnI GGCC 5 cut(s) 13, 412, 719, 1117, 1197
Bso31I GGTCTC 1 cut(s) 347
Bsp119I TTCGAA 1 cut(s) 668
Bsp1407I TGTACA 1 cut(s) 964
Bsp143I GATC 5 cut(s) 65, 272, 289, 379, 1186
Bsp1720I GCTNAGC 1 cut(s) 102
BspACI CCGC 4 cut(s) 34, 140, 676, 1125
BspANI GGCC 5 cut(s) 13, 412, 719, 1117, 1197
BspCNI CTCAG 5 cut(s) 115, 722, 1013, 1198, 1231
BspDI ATCGAT 1 cut(s) 429
BspFNI CGCG 1 cut(s) 277
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 2 cut(s) 291, 636
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 4 cut(s) 280, 284, 297, 374
BspT104I TTCGAA 1 cut(s) 668
BspTI CTTAAG 1 cut(s) 770
BspTNI GGTCTC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 770
BsrGI TGTACA 1 cut(s) 964
BsrI ACTGG 2 cut(s) 339, 784
BssECI CCNNGG 3 cut(s) 345, 490, 1118
BssMI GATC 5 cut(s) 65, 272, 289, 379, 1186
BssSI CACGAG 1 cut(s) 683
BssT1I CCWWGG 2 cut(s) 490, 1118
Bst2BI CACGAG 1 cut(s) 683
Bst2UI CCWGG 4 cut(s) 98, 346, 632, 639
Bst4CI ACNGT 6 cut(s) 53, 473, 524, 581, 1150, 1251
Bst6I CTCTTC 4 cut(s) 551, 864, 1083, 1230
BstAFI CTTAAG 1 cut(s) 770
BstAPI GCANNNNNTGC 1 cut(s) 220
BstAUI TGTACA 1 cut(s) 964
BstBAI YACGTR 1 cut(s) 1033
BstBI TTCGAA 1 cut(s) 668
BstC8I GCNNGC 1 cut(s) 1127
BstDEI CTNAG 6 cut(s) 69, 102, 709, 1000, 1206, 1218
BstEII GGTNACC 1 cut(s) 1174
BstF5I GGATG 4 cut(s) 10, 93, 118, 1064
BstFNI CGCG 1 cut(s) 277
BstKTI GATC 5 cut(s) 68, 275, 292, 382, 1189
BstMAI GTCTC 3 cut(s) 18, 347, 1196
BstMBI GATC 5 cut(s) 65, 272, 289, 379, 1186
BstMWI GCNNNNNNNGC 4 cut(s) 220, 679, 1002, 1135
BstNI CCWGG 4 cut(s) 98, 346, 632, 639
BstNSI RCATGY 5 cut(s) 171, 252, 566, 626, 956
BstPI GGTNACC 1 cut(s) 1174
BstSCI CCNGG 4 cut(s) 96, 344, 630, 637
BstSFI CTRYAG 1 cut(s) 61
BstUI CGCG 1 cut(s) 277
BstV1I GCAGC 3 cut(s) 226, 631, 660
BstV2I GAAGAC 2 cut(s) 80, 908
BstX2I RGATCY 2 cut(s) 65, 289
BstXI CCANNNNNNTGG 1 cut(s) 638
BstYI RGATCY 2 cut(s) 65, 289
Bsu15I ATCGAT 1 cut(s) 429
BsuRI GGCC 5 cut(s) 13, 412, 719, 1117, 1197
BsuTUI ATCGAT 1 cut(s) 429
BtsCI GGATG 4 cut(s) 10, 93, 118, 1064
BtsI GCAGTG 2 cut(s) 400, 1145
BtsIMutI CAGTG 4 cut(s) 400, 586, 717, 1145
BveI ACCTGC 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 1127
CaiI CAGNNNCTG 1 cut(s) 1205
CciI TCATGA 1 cut(s) 865
Cfr13I GGNCC 4 cut(s) 336, 460, 775, 1196
ClaI ATCGAT 1 cut(s) 429
CsiI ACCWGGT 1 cut(s) 637
Csp6I GTAC 6 cut(s) 49, 342, 399, 861, 965, 1163
CviQI GTAC 6 cut(s) 49, 342, 399, 861, 965, 1163
DdeI CTNAG 6 cut(s) 69, 102, 709, 1000, 1206, 1218
DpnI GATC 5 cut(s) 67, 274, 291, 381, 1188
DpnII GATC 5 cut(s) 65, 272, 289, 379, 1186
DraIII CACNNNGTG 1 cut(s) 395
Eam1104I CTCTTC 4 cut(s) 551, 864, 1083, 1230
EarI CTCTTC 4 cut(s) 551, 864, 1083, 1230
Eco130I CCWWGG 2 cut(s) 490, 1118
Eco147I AGGCCT 1 cut(s) 719
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 3 cut(s) 336, 460, 775
Eco57I CTGAAG 2 cut(s) 230, 467
Eco72I CACGTG 1 cut(s) 1033
Eco91I GGTNACC 1 cut(s) 1174
EcoO65I GGTNACC 1 cut(s) 1174
EcoRII CCWGG 4 cut(s) 96, 344, 630, 637
EcoT14I CCWWGG 2 cut(s) 490, 1118
ErhI CCWWGG 2 cut(s) 490, 1118
FauI CCCGC 1 cut(s) 1118
FauNDI CATATG 2 cut(s) 219, 415
Fnu4HI GCNGC 3 cut(s) 215, 620, 674
FokI GGATG 4 cut(s) 17, 80, 125, 1071
Fsp4HI GCNGC 3 cut(s) 215, 620, 674
FspBI CTAG 2 cut(s) 186, 600
GluI GCNGC 3 cut(s) 215, 620, 674
HaeIII GGCC 5 cut(s) 13, 412, 719, 1117, 1197
HapII CCGG 1 cut(s) 1108
HinfI GANTC 5 cut(s) 57, 76, 242, 689, 707
HpaII CCGG 1 cut(s) 1108
Hpy166II GTNNAC 2 cut(s) 336, 967
Hpy188I TCNGA 6 cut(s) 23, 81, 210, 615, 730, 1146
Hpy188III TCNNGA 3 cut(s) 193, 866, 1056
Hpy8I GTNNAC 2 cut(s) 336, 967
HpyAV CCTTC 7 cut(s) 124, 602, 603, 730, 820, 952, 994
HpyCH4III ACNGT 6 cut(s) 53, 473, 524, 581, 1150, 1251
HpyCH4IV ACGT 2 cut(s) 552, 1032
HpyCH4V TGCA 3 cut(s) 203, 223, 423
HpyF10VI GCNNNNNNNGC 4 cut(s) 220, 679, 1002, 1135
HpyF3I CTNAG 6 cut(s) 69, 102, 709, 1000, 1206, 1218
HpySE526I ACGT 2 cut(s) 552, 1032
Kzo9I GATC 5 cut(s) 65, 272, 289, 379, 1186
LmnI GCTCC 1 cut(s) 373
Lsp1109I GCAGC 3 cut(s) 226, 631, 660
MabI ACCWGGT 1 cut(s) 637
MaeI CTAG 2 cut(s) 186, 600
MaeII ACGT 2 cut(s) 552, 1032
MaeIII GTNAC 2 cut(s) 548, 1174
MalI GATC 5 cut(s) 67, 274, 291, 381, 1188
MboI GATC 5 cut(s) 65, 272, 289, 379, 1186
MfeI CAATTG 1 cut(s) 513
MflI RGATCY 2 cut(s) 65, 289
MluCI AATT 7 cut(s) 513, 533, 572, 659, 891, 1103, 1190
MlyI GAGTC 2 cut(s) 70, 701
MmeI TCCRAC 2 cut(s) 997, 1169
MseI TTAA 5 cut(s) 504, 699, 771, 894, 906
MslI CAYNNNNRTG 2 cut(s) 111, 1068
MspCI CTTAAG 1 cut(s) 770
MspI CCGG 1 cut(s) 1108
MspR9I CCNGG 4 cut(s) 98, 346, 632, 639
MunI CAATTG 1 cut(s) 513
MvaI CCWGG 4 cut(s) 98, 346, 632, 639
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 4 cut(s) 220, 679, 1002, 1135
NdeI CATATG 2 cut(s) 219, 415
NdeII GATC 5 cut(s) 65, 272, 289, 379, 1186
NlaIV GGNNCC 2 cut(s) 291, 636
NspI RCATGY 5 cut(s) 171, 252, 566, 626, 956
NspV TTCGAA 1 cut(s) 668
PagI TCATGA 1 cut(s) 865
PceI AGGCCT 1 cut(s) 719
PciI ACATGT 3 cut(s) 167, 248, 952
PfeI GAWTC 3 cut(s) 57, 242, 689
PkrI GCNGC 3 cut(s) 216, 621, 675
PleI GAGTC 2 cut(s) 70, 701
PmaCI CACGTG 1 cut(s) 1033
PmlI CACGTG 1 cut(s) 1033
PpsI GAGTC 2 cut(s) 70, 701
Ppu21I YACGTR 1 cut(s) 1033
PscI ACATGT 3 cut(s) 167, 248, 952
Psp6I CCWGG 4 cut(s) 96, 344, 630, 637
PspCI CACGTG 1 cut(s) 1033
PspEI GGTNACC 1 cut(s) 1174
PspGI CCWGG 4 cut(s) 96, 344, 630, 637
PspN4I GGNNCC 2 cut(s) 291, 636
PspPI GGNCC 4 cut(s) 336, 460, 775, 1196
PstNI CAGNNNCTG 1 cut(s) 1205
PsuI RGATCY 2 cut(s) 65, 289
RsaI GTAC 6 cut(s) 50, 343, 400, 862, 966, 1164
RsaNI GTAC 6 cut(s) 49, 342, 399, 861, 965, 1163
RseI CAYNNNNRTG 2 cut(s) 111, 1068
SaqAI TTAA 5 cut(s) 504, 699, 771, 894, 906
SatI GCNGC 3 cut(s) 215, 620, 674
Sau3AI GATC 5 cut(s) 65, 272, 289, 379, 1186
Sau96I GGNCC 4 cut(s) 336, 460, 775, 1196
ScaI AGTACT 1 cut(s) 50
SchI GAGTC 2 cut(s) 70, 701
ScrFI CCNGG 4 cut(s) 98, 346, 632, 639
SexAI ACCWGGT 1 cut(s) 637
SfcI CTRYAG 1 cut(s) 61
SfuI TTCGAA 1 cut(s) 668
SinI GGWCC 3 cut(s) 336, 460, 775
SmiMI CAYNNNNRTG 2 cut(s) 111, 1068
SmlI CTYRAG 3 cut(s) 236, 329, 770
SmoI CTYRAG 3 cut(s) 236, 329, 770
Sse9I AATT 7 cut(s) 513, 533, 572, 659, 891, 1103, 1190
SseBI AGGCCT 1 cut(s) 719
SsiI CCGC 4 cut(s) 34, 140, 676, 1125
SspI AATATT 1 cut(s) 749
SspMI CTAG 2 cut(s) 186, 600
StuI AGGCCT 1 cut(s) 719
StyD4I CCNGG 4 cut(s) 96, 344, 630, 637
StyI CCWWGG 2 cut(s) 490, 1118
TaaI ACNGT 6 cut(s) 53, 473, 524, 581, 1150, 1251
TaiI ACGT 2 cut(s) 555, 1035
TaqI TCGA 2 cut(s) 429, 668
TasI AATT 7 cut(s) 513, 533, 572, 659, 891, 1103, 1190
TatI WGTACW 2 cut(s) 48, 964
TfiI GAWTC 3 cut(s) 57, 242, 689
Tru1I TTAA 5 cut(s) 504, 699, 771, 894, 906
Tru9I TTAA 5 cut(s) 504, 699, 771, 894, 906
TscAI CASTG 4 cut(s) 400, 586, 717, 1145
TseI GCWGC 3 cut(s) 214, 619, 673
TspDTI ATGAA 3 cut(s) 758, 873, 882
TspGWI ACGGA 1 cut(s) 848
TspRI CASTG 4 cut(s) 400, 586, 717, 1145
Vha464I CTTAAG 1 cut(s) 770
VpaK11BI GGWCC 3 cut(s) 336, 460, 775
XapI RAATTY 3 cut(s) 533, 572, 659
XceI RCATGY 5 cut(s) 171, 252, 566, 626, 956
XspI CTAG 2 cut(s) 186, 600
ZrmI AGTACT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.