Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004514.1

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Reverse (-)

148707 .. 149341

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004514.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgaagagggaggttcttcattggaaattaaatgtgattataaggaaatcaaatcttcttcaacacatgaaggctgtacacctccaacaaaaacccttcgcttgtagcttctcaggctgtggcaagacattctcgtacaagcacgtgagagataagcatgagaagtctggatgtcatgtatatgcctatggggattttgaagaggctgatgagcaattccggtcaaggccaaggggcgggcgtaagaggcagtgtccgacagtagaaatgcttgtacgaaaaagggttaccccaccagatcaattcggcccagagactgagttcctctctcagttcttctcacaagaagaggaagatgaacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

121

Amino Acids

14.3

Weight (kDa)

8.95

Isoelectric Point (pI)

58.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	41
AciI	CCGC	1 cut(s)	237
AcvI	CACGTG	1 cut(s)	145
AfaI	GTAC	3 cut(s)	78, 137, 276
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	62, 200
AluBI	AGCT	1 cut(s)	108
AluI	AGCT	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	308
AlwNI	CAGNNNCTG	1 cut(s)	317
AoxI	GGCC	2 cut(s)	227, 307
AspS9I	GGNCC	1 cut(s)	308
BbrPI	CACGTG	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BsaAI	YACGTR	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	3 cut(s)	126, 309, 344
BshFI	GGCC	2 cut(s)	229, 309
BsiSI	CCGG	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	229, 309
Bsp1407I	TGTACA	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	2 cut(s)	229, 309
BspCNI	CTCAG	3 cut(s)	125, 310, 343
BsrGI	TGTACA	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	230
Bst4CI	ACNGT	2 cut(s)	262, 363
Bst6I	CTCTTC	2 cut(s)	195, 342
BstAUI	TGTACA	1 cut(s)	76
BstBAI	YACGTR	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	3 cut(s)	112, 318, 330
BstEII	GGTNACC	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	176
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 247
BstPI	GGTNACC	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	229, 309
BtsCI	GGATG	1 cut(s)	176
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	239
CaiI	CAGNNNCTG	1 cut(s)	317
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	3 cut(s)	77, 136, 275
CviAII	CATG	3 cut(s)	67, 158, 176
CviJI	RGCY	6 cut(s)	74, 108, 117, 206, 229, 309
CviKI_1	RGCY	6 cut(s)	74, 108, 117, 206, 229, 309
CviQI	GTAC	3 cut(s)	77, 136, 275
DdeI	CTNAG	3 cut(s)	112, 318, 330
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eam1104I	CTCTTC	2 cut(s)	195, 342
EarI	CTCTTC	2 cut(s)	195, 342
Eco130I	CCWWGG	1 cut(s)	230
Eco72I	CACGTG	1 cut(s)	145
Eco91I	GGTNACC	1 cut(s)	286
EcoO65I	GGTNACC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	3 cut(s)	70, 161, 179
FaiI	YATR	7 cut(s)	41, 68, 159, 177, 181, 183, 189
FatI	CATG	3 cut(s)	66, 157, 175
FauI	CCCGC	1 cut(s)	230
FokI	GGATG	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	229, 309
HapII	CCGG	1 cut(s)	220
Hin1II	CATG	3 cut(s)	70, 161, 179
HpaII	CCGG	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	1 cut(s)	168
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	64, 106
HpyCH4III	ACNGT	2 cut(s)	262, 363
HpyCH4IV	ACGT	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 247
HpyF3I	CTNAG	3 cut(s)	112, 318, 330
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	3 cut(s)	70, 161, 179
Kzo9I	GATC	1 cut(s)	298
LpnPI	CCDG	5 cut(s)	99, 153, 233, 309, 324
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	8 cut(s)	8, 16, 47, 50, 212, 328, 359, 365
MluCI	AATT	3 cut(s)	26, 215, 302
MmeI	TCCRAC	2 cut(s)	109, 281
MnlI	CCTC	6 cut(s)	4, 92, 196, 240, 335, 343
MseI	TTAA	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	114, 247
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	70, 161, 179
PmaCI	CACGTG	1 cut(s)	145
PmlI	CACGTG	1 cut(s)	145
Ppu21I	YACGTR	1 cut(s)	145
PsiI	TTATAA	1 cut(s)	41
PspCI	CACGTG	1 cut(s)	145
PspEI	GGTNACC	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	317
RsaI	GTAC	3 cut(s)	78, 137, 276
RsaNI	GTAC	3 cut(s)	77, 136, 275
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	308
SetI	ASST	4 cut(s)	15, 84, 110, 147
SmiMI	CAYNNNNRTG	1 cut(s)	180
Sse9I	AATT	3 cut(s)	26, 215, 302
SsiI	CCGC	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	2 cut(s)	262, 363
TaiI	ACGT	1 cut(s)	147
TasI	AATT	3 cut(s)	26, 215, 302
TatI	WGTACW	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	8, 17, 83
TspRI	CASTG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.