Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Reverse (-)

27687515 .. 27690044

Gene Structure 2530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26190.t11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGCGAGAGGGTACAGACTTGAATGGACCAGTACCAGGGGGGAGACCTCCTGTGAAGCTCCATCAAGTGACCCTCAATCACACTAGGCCATATGTTTGCACAATCGATGATTGTCGTTCTGCTTATAGAAGGAAGGACCATTTGAACCGTCATCTTCTTCAGCACCAAGGAAAACTCTTTAAGTGTCCAATTGAGAACTGTAAGAGTGAATTTGCTTTTCAAGGTAACGTGAAGAGGCATGTTGTAGAATTGCACAGTGAGAATTGCCCTTCTATTAGCGTTGAAGGTCAAAAGCAGCATGTGTGCCAGGAACCTGGTTGTGGAAAGGTGTTCCAATTTGCTTCGAAGCTGTGGAAATACGAGGATTCTCATGTTAAGCTGGACTCAGTGGAAGCCTTCTGCTCTGAACCAGATTGTATGAAATATTTTTCTAATAAGCAATGCCTTCAGGACCATATCCAGTCCTGCCACACTCATATCACTTGCGAGATATGTGGGAACAAGGAATGGAAAAAGAACATCAGAACCCATCTCCATGCTCATGAAGAGGGAGTCTCTTCATTGGAAATCAAATGTGAATATGAGGGTTGTCTTCACACATTTACTAAAAAATTGAATCTTCTCCAGCATGTGAAAGCTGTACACCTCCAACAGAAACCCTTCTCTTGTAGCTTCTCAGGTTGTAGCAAGACATTCTCATACAAGCACGTGAGAGATAAGCACGAAAAGTCTGGATGTCATGTATATGCCTATGGGGATTTTGAGGAGGCTGATGAGCAATTCCGGTCAAGGCCAAGAGGTGGGCGAAAGAGGATGTGTCCAACAGTGGAAATGCTTGTACGTAAAAGGGTTACTCCACCAGATCAATTTGGACCAGAGACCGAGTTCCTCTCCCAGTTCTTCTCACAAGAGGTAGACGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

309

Amino Acids

35.64

Weight (kDa)

8.34

Isoelectric Point (pI)

55.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	800
AccI	GTMKAC	1 cut(s)	915
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	2 cut(s)	143, 431
AcvI	CACGTG	1 cut(s)	709
AfaI	GTAC	4 cut(s)	13, 33, 642, 840
AfiI	CCNNNNNNNGG	3 cut(s)	35, 320, 800
AgsI	TTSAA	5 cut(s)	22, 145, 221, 284, 616
AjnI	CCWGG	3 cut(s)	34, 306, 313
AluBI	AGCT	5 cut(s)	58, 349, 379, 638, 672
AluI	AGCT	5 cut(s)	58, 349, 379, 638, 672
Alw26I	GTCTC	3 cut(s)	37, 559, 872
AoxI	GGCC	2 cut(s)	86, 791
ApeKI	GCWGC	1 cut(s)	295
ApoI	RAATTY	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	659
AspS9I	GGNCC	4 cut(s)	26, 136, 451, 872
AsuII	TTCGAA	1 cut(s)	344
AvaII	GGWCC	4 cut(s)	26, 136, 451, 872
BbrPI	CACGTG	1 cut(s)	709
BbsI	GAAGAC	1 cut(s)	584
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	2 cut(s)	69, 537
BciT130I	CCWGG	3 cut(s)	36, 308, 315
BcoDI	GTCTC	3 cut(s)	37, 559, 872
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	1 cut(s)	296
BlsI	GCNGC	1 cut(s)	297
Bme1390I	CCNGG	3 cut(s)	36, 308, 315
Bme18I	GGWCC	4 cut(s)	26, 136, 451, 872
BmgT120I	GGNCC	4 cut(s)	26, 136, 451, 872
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	3 cut(s)	36, 308, 315
BmrI	ACTGGG	1 cut(s)	889
BmuI	ACTGGG	1 cut(s)	889
BpiI	GAAGAC	1 cut(s)	584
BplI	GAGNNNNNCTC	4 cut(s)	539, 571, 875, 907
BpmI	CTGGAG	1 cut(s)	608
Bpu14I	TTCGAA	1 cut(s)	344
Bsa29I	ATCGAT	1 cut(s)	105
BsaAI	YACGTR	2 cut(s)	709, 842
BsaI	GGTCTC	2 cut(s)	37, 872
BsaJI	CCNNGG	2 cut(s)	35, 166
BsaWI	WCCGGW	1 cut(s)	783
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 320, 800
Bse1I	ACTGG	3 cut(s)	29, 460, 895
Bse3DI	GCAATG	1 cut(s)	446
BseBI	CCWGG	3 cut(s)	36, 308, 315
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	35, 166
BseGI	GGATG	2 cut(s)	740, 819
BseLI	CCNNNNNNNGG	3 cut(s)	35, 320, 800
BseMI	GCAATG	1 cut(s)	446
BseMII	CTCAG	2 cut(s)	399, 690
BseNI	ACTGG	3 cut(s)	29, 460, 895
BseRI	GAGGAG	1 cut(s)	779
BseXI	GCAGC	1 cut(s)	307
BshFI	GGCC	2 cut(s)	88, 793
BshVI	ATCGAT	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	784
BslI	CCNNNNNNNGG	3 cut(s)	35, 320, 800
BsmAI	GTCTC	3 cut(s)	37, 559, 872
BsnI	GGCC	2 cut(s)	88, 793
Bso31I	GGTCTC	2 cut(s)	37, 872
Bsp119I	TTCGAA	1 cut(s)	344
Bsp1407I	TGTACA	1 cut(s)	640
Bsp143I	GATC	1 cut(s)	862
BspANI	GGCC	2 cut(s)	88, 793
BspCNI	CTCAG	2 cut(s)	398, 689
BspDI	ATCGAT	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	1 cut(s)	312
BspT104I	TTCGAA	1 cut(s)	344
BspTNI	GGTCTC	2 cut(s)	37, 872
BsrDI	GCAATG	1 cut(s)	446
BsrGI	TGTACA	1 cut(s)	640
BsrI	ACTGG	3 cut(s)	29, 460, 895
BssECI	CCNNGG	2 cut(s)	35, 166
BssMI	GATC	1 cut(s)	862
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	3 cut(s)	36, 308, 315
Bst4CI	ACNGT	5 cut(s)	149, 200, 257, 826, 924
Bst6I	CTCTTC	3 cut(s)	227, 540, 562
BstAUI	TGTACA	1 cut(s)	640
BstBAI	YACGTR	2 cut(s)	709, 842
BstBI	TTCGAA	1 cut(s)	344
BstDEI	CTNAG	2 cut(s)	385, 676
BstF5I	GGATG	2 cut(s)	740, 819
BstKTI	GATC	1 cut(s)	865
BstMAI	GTCTC	3 cut(s)	37, 559, 872
BstMBI	GATC	1 cut(s)	862
BstNI	CCWGG	3 cut(s)	36, 308, 315
BstNSI	RCATGY	3 cut(s)	242, 302, 632
BstSCI	CCNGG	3 cut(s)	34, 306, 313
BstSNI	TACGTA	1 cut(s)	842
BstV1I	GCAGC	1 cut(s)	307
BstV2I	GAAGAC	1 cut(s)	584
BstXI	CCANNNNNNTGG	1 cut(s)	314
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	88, 793
BsuTUI	ATCGAT	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	740, 819
BtsIMutI	CAGTG	3 cut(s)	262, 393, 831
CciI	TCATGA	1 cut(s)	541
Cfr13I	GGNCC	4 cut(s)	26, 136, 451, 872
ClaI	ATCGAT	1 cut(s)	105
CsiI	ACCWGGT	1 cut(s)	313
Csp6I	GTAC	4 cut(s)	12, 32, 641, 839
CviAII	CATG	7 cut(s)	239, 299, 371, 536, 542, 629, 740
CviJI	RGCY	9 cut(s)	58, 88, 349, 379, 395, 638, 672, 770, 793
CviKI_1	RGCY	9 cut(s)	58, 88, 349, 379, 395, 638, 672, 770, 793
CviQI	GTAC	4 cut(s)	12, 32, 641, 839
DdeI	CTNAG	2 cut(s)	385, 676
DpnI	GATC	1 cut(s)	864
DpnII	GATC	1 cut(s)	862
Eam1104I	CTCTTC	3 cut(s)	227, 540, 562
EarI	CTCTTC	3 cut(s)	227, 540, 562
Eco105I	TACGTA	1 cut(s)	842
Eco130I	CCWWGG	1 cut(s)	166
Eco31I	GGTCTC	2 cut(s)	37, 872
Eco47I	GGWCC	4 cut(s)	26, 136, 451, 872
Eco57I	CTGAAG	2 cut(s)	143, 431
Eco72I	CACGTG	1 cut(s)	709
EcoRII	CCWGG	3 cut(s)	34, 306, 313
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	7 cut(s)	242, 302, 374, 539, 545, 632, 743
FatI	CATG	7 cut(s)	238, 298, 370, 535, 541, 628, 739
FauNDI	CATATG	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	915
Fnu4HI	GCNGC	1 cut(s)	296
FokI	GGATG	2 cut(s)	747, 826
Fsp4HI	GCNGC	1 cut(s)	296
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	1 cut(s)	296
GsuI	CTGGAG	1 cut(s)	608
HaeIII	GGCC	2 cut(s)	88, 793
HapII	CCGG	1 cut(s)	784
Hin1II	CATG	7 cut(s)	242, 302, 374, 539, 545, 632, 743
HinfI	GANTC	4 cut(s)	365, 383, 552, 616
HpaII	CCGG	1 cut(s)	784
Hpy166II	GTNNAC	2 cut(s)	643, 916
Hpy188I	TCNGA	2 cut(s)	406, 524
Hpy188III	TCNNGA	3 cut(s)	449, 542, 732
Hpy8I	GTNNAC	2 cut(s)	643, 916
HpyAV	CCTTC	7 cut(s)	123, 127, 278, 279, 406, 455, 670
HpyCH4III	ACNGT	5 cut(s)	149, 200, 257, 826, 924
HpyCH4IV	ACGT	3 cut(s)	228, 708, 841
HpyCH4V	TGCA	2 cut(s)	99, 253
HpyF3I	CTNAG	2 cut(s)	385, 676
HpySE526I	ACGT	3 cut(s)	228, 708, 841
Hsp92II	CATG	7 cut(s)	242, 302, 374, 539, 545, 632, 743
Kzo9I	GATC	1 cut(s)	862
LmnI	GCTCC	1 cut(s)	63
Lsp1109I	GCAGC	1 cut(s)	307
MabI	ACCWGGT	1 cut(s)	313
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	3 cut(s)	228, 708, 841
MaeIII	GTNAC	3 cut(s)	67, 224, 850
MalI	GATC	1 cut(s)	864
MboI	GATC	1 cut(s)	862
MboII	GAAGA	8 cut(s)	146, 149, 244, 549, 557, 584, 611, 892
MfeI	CAATTG	1 cut(s)	189
MluCI	AATT	8 cut(s)	189, 209, 248, 262, 335, 611, 779, 866
MlyI	GAGTC	2 cut(s)	377, 561
MmeI	TCCRAC	2 cut(s)	673, 845
MroXI	GAANNNNTTC	1 cut(s)	659
MseI	TTAA	2 cut(s)	180, 375
MslI	CAYNNNNRTG	3 cut(s)	534, 540, 744
MspI	CCGG	1 cut(s)	784
MspR9I	CCNGG	3 cut(s)	36, 308, 315
MunI	CAATTG	1 cut(s)	189
MvaI	CCWGG	3 cut(s)	36, 308, 315
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	1 cut(s)	862
NlaIII	CATG	7 cut(s)	242, 302, 374, 539, 545, 632, 743
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	67
NspI	RCATGY	3 cut(s)	242, 302, 632
NspV	TTCGAA	1 cut(s)	344
PagI	TCATGA	1 cut(s)	541
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	2 cut(s)	365, 616
PflMI	CCANNNNNTGG	1 cut(s)	800
PkrI	GCNGC	1 cut(s)	297
PleI	GAGTC	2 cut(s)	377, 560
PmaCI	CACGTG	1 cut(s)	709
PmlI	CACGTG	1 cut(s)	709
PpsI	GAGTC	2 cut(s)	377, 560
Ppu21I	YACGTR	2 cut(s)	709, 842
Psp6I	CCWGG	3 cut(s)	34, 306, 313
PspCI	CACGTG	1 cut(s)	709
PspGI	CCWGG	3 cut(s)	34, 306, 313
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	4 cut(s)	26, 136, 451, 872
RsaI	GTAC	4 cut(s)	13, 33, 642, 840
RsaNI	GTAC	4 cut(s)	12, 32, 641, 839
RseI	CAYNNNNRTG	3 cut(s)	534, 540, 744
SaqAI	TTAA	2 cut(s)	180, 375
SatI	GCNGC	1 cut(s)	296
Sau3AI	GATC	1 cut(s)	862
Sau96I	GGNCC	4 cut(s)	26, 136, 451, 872
SchI	GAGTC	2 cut(s)	377, 561
ScrFI	CCNGG	3 cut(s)	36, 308, 315
SexAI	ACCWGGT	1 cut(s)	313
SfuI	TTCGAA	1 cut(s)	344
SinI	GGWCC	4 cut(s)	26, 136, 451, 872
SmiMI	CAYNNNNRTG	3 cut(s)	534, 540, 744
SnaBI	TACGTA	1 cut(s)	842
Sse9I	AATT	8 cut(s)	189, 209, 248, 262, 335, 611, 779, 866
SspI	AATATT	1 cut(s)	425
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	3 cut(s)	34, 306, 313
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	5 cut(s)	149, 200, 257, 826, 924
TaiI	ACGT	3 cut(s)	231, 711, 844
TaqI	TCGA	2 cut(s)	105, 344
TaqII	GACCGA	1 cut(s)	896
TasI	AATT	8 cut(s)	189, 209, 248, 262, 335, 611, 779, 866
TatI	WGTACW	1 cut(s)	640
TfiI	GAWTC	2 cut(s)	365, 616
Tru1I	TTAA	2 cut(s)	180, 375
Tru9I	TTAA	2 cut(s)	180, 375
TscAI	CASTG	3 cut(s)	262, 393, 831
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	434, 549, 558
TspRI	CASTG	3 cut(s)	262, 393, 831
Van91I	CCANNNNNTGG	1 cut(s)	800
VpaK11BI	GGWCC	4 cut(s)	26, 136, 451, 872
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	3 cut(s)	242, 302, 632
XmiI	GTMKAC	1 cut(s)	915
XmnI	GAANNNNTTC	1 cut(s)	659
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.